Works matching AU Kankainen, Matti

Results: 43

PI3Kβ inhibition enhances ALK‐inhibitor sensitivity in ALK‐rearranged lung cancer.

Published in:

Molecular Oncology, 2023, v. 17, n. 5, p. 747, doi. 10.1002/1878-0261.13342

By:

Talwelkar, Sarang S.;
Mäyränpää, Mikko I.;
Schüler, Julia;
Linnavirta, Nora;
Hemmes, Annabrita;
Adinolfi, Simone;
Kankainen, Matti;
Sommergruber, Wolfgang;
Levonen, Anna‐Liisa;
Räsänen, Jari;
Knuuttila, Aija;
Verschuren, Emmy W.;
Wennerberg, Krister

Publication type:

Article

Epigenetic modifier gene mutations in chronic myeloid leukemia (CML) at diagnosis are associated with risk of relapse upon treatment discontinuation.

Published in:

2022

By:

Adnan Awad, Shady;
Brück, Oscar;
Shanmuganathan, Naranie;
Jarvinen, Timo;
Lähteenmäki, Hanna;
Klievink, Jay;
Ibrahim, Hazem;
Kytölä, Soili;
Koskenvesa, Perttu;
Hughes, Timothy P.;
Branford, Susan;
Kankainen, Matti;
Mustjoki, Satu

Publication type:

Letter

Identifying functional gene sets from hierarchically clustered expression data: map of abiotic stress regulated genes in Arabidopsis thaliana.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 18, p. e124, doi. 10.1093/nar/gkl694

By:

Kankainen, Matti;
Brader, Günter;
Törönen, Petri;
Palva, E. Tapio;
Holm, Liisa

Publication type:

Article

POXO: a web-enabled tool series to discover transcription factor binding sites.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w534, doi. 10.1093/nar/gkl296

By:

Kankainen, Matti;
Pehkonen, Petri;
Rosenstöm, Päivi;
Törönen, Petri;
Wong, Garry;
Holm, Liisa

Publication type:

Article

POCO: discovery of regulatory patterns from promoters of oppositely expressed gene sets.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w427, doi. 10.1093/nar/gki467

By:

Kankainen, Matti;
Holm, Liisa

Publication type:

Article

POBO, transcription factor binding site verification with bootstrapping.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w222, doi. 10.1093/nar/gkh463

By:

Kankainen, Matti;
Holm, Liisa

Publication type:

Article

DANCER: a program for digital anatomical reconstruction of gene expression data.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 21, p. e132, doi. 10.1093/nar/gng132

By:

Kankainen, Matti;
Wong, Garry

Publication type:

Article

Single-cell characterization of leukemic and non-leukemic immune repertoires in CD8<sup>+</sup> T-cell large granular lymphocytic leukemia.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29173-z

By:

Huuhtanen, Jani;
Bhattacharya, Dipabarna;
Lönnberg, Tapio;
Kankainen, Matti;
Kerr, Cassandra;
Theodoropoulos, Jason;
Rajala, Hanna;
Gurnari, Carmelo;
Kasanen, Tiina;
Braun, Till;
Teramo, Antonella;
Zambello, Renato;
Herling, Marco;
Ishida, Fumihiro;
Kawakami, Toru;
Salmi, Marko;
Loughran, Thomas;
Maciejewski, Jaroslaw P.;
Lähdesmäki, Harri;
Kelkka, Tiina

Publication type:

Article

Adhesive polypeptides of Staphylococcus aureus identified using a novel secretion library technique in Escherichia coli.

Published in:

BMC Microbiology, 2011, v. 11, n. 1, p. 117, doi. 10.1186/1471-2180-11-117

By:

Kylväjä, Riikka;
Kankainen, Matti;
Holm, Liisa;
Westerlund-Wikström, Benita

Publication type:

Article

P1228: GENOME‐WIDE CRISPR‐CAS9 SCREENING IDENTIFIES THERAPEUTIC TARGETS FOR MATURE T‐CELL MALIGNANCIES.

Published in:

HemaSphere, 2023, v. 7, p. 1, doi. 10.1097/01.HS9.0000971804.04124.16

By:

Timonen, Sanna;
Rebecca Gasparini, Vanessa;
Piekkari, Ella;
Dufva, Olli;
Awad, Shady;
Akimov, Yevhen;
von Jan, Jana;
Braun, Till;
Ianevski, Aleksandr;
Kankainen, Matti;
Klievink, Jay;
Herling, Marco;
Aittokallio, Tero;
Mustjoki, Satu

Publication type:

Article

Targeting Apoptosis Pathways With BCL2 and MDM2 Inhibitors in Adult B-cell Acute Lymphoblastic Leukemia.

Published in:

HemaSphere, 2022, v. 6, n. 3, p. e701, doi. 10.1097/HS9.0000000000000701

By:

Hohtari, Helena;
Kankainen, Matti;
Adnan-Awad, Shady;
Yadav, Bhagwan;
Potdar, Swapnil;
Ianevski, Aleksandr;
Dufva, Olli;
Heckman, Caroline;
Sexl, Veronika;
Kytölä, Soili;
Mustjoki, Satu;
Porkka, Kimmo

Publication type:

Article

Network pharmacology modeling identifies synergistic Aurora B and ZAK interaction in triple-negative breast cancer.

Published in:

NPJ Systems Biology & Applications, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1038/s41540-019-0098-z

By:

Tang, Jing;
Gautam, Prson;
Gupta, Abhishekh;
He, Liye;
Timonen, Sanna;
Akimov, Yevhen;
Wang, Wenyu;
Szwajda, Agnieszka;
Jaiswal, Alok;
Turei, Denes;
Yadav, Bhagwan;
Kankainen, Matti;
Saarela, Jani;
Saez-Rodriguez, Julio;
Wennerberg, Krister;
Aittokallio, Tero

Publication type:

Article

CD73 contributes to anti‐inflammatory properties of afferent lymphatic endothelial cells in humans and mice.

Published in:

European Journal of Immunology, 2021, v. 51, n. 1, p. 231, doi. 10.1002/eji.201948432

By:

Eichin, Dominik;
Pessia, Alberto;
Takeda, Akira;
Laakkonen, Joni;
Bellmann, Lydia;
Kankainen, Matti;
Imhof, Beat A.;
Stoitzner, Patrizia;
Tang, Jing;
Salmi, Marko;
Jalkanen, Sirpa

Publication type:

Article

Mutational landscape of chronic myeloid leukemia: more than a single oncogene leukemia.

Published in:

Leukemia & Lymphoma, 2021, v. 62, n. 9, p. 2064, doi. 10.1080/10428194.2021.1894652

By:

Adnan-Awad, Shady;
Kankainen, Matti;
Mustjoki, Satu

Publication type:

Article

Genome-Wide Analysis of Evolutionary Markers of Human Influenza A(H1N1)pdm09 and A(H3N2) Viruses May Guide Selection of Vaccine Strain Candidates.

Published in:

Genome Biology & Evolution, 2015, v. 7, n. 12, p. 3472, doi. 10.1093/gbe/evv240

By:

Belanov, Sergei S.;
Bychkov, Dmitrii;
Benner, Christian;
Ripatti, Samuli;
Ojala, Teija;
Kankainen, Matti;
Hong Kai Lee;
Wei-Tze Tang, Julian;
Kainov, Denis E.

Publication type:

Article

Growth phase-associated changes in the proteome and transcriptome of Lactobacillus rhamnosus GG in industrial-type whey medium.

Published in:

Microbial Biotechnology, 2011, v. 4, n. 6, p. 746, doi. 10.1111/j.1751-7915.2011.00275.x

By:

Laakso, Kati;
Koskenniemi, Kerttu;
Koponen, Johanna;
Kankainen, Matti;
Surakka, Anu;
Salusjärvi, Tuomas;
Auvinen, Petri;
Savijoki, Kirsi;
Nyman, Tuula A.;
Kalkkinen, Nisse;
Tynkkynen, Soile;
Varmanen, Pekka

Publication type:

Article

Identification of regulatory elements in the AGT1 promoter of ale and lager strains of brewer's yeast.

Published in:

Yeast, 2011, v. 28, n. 8, p. 579, doi. 10.1002/yea.1888

By:

Vidgren, Virve;
Kankainen, Matti;
Londesborough, John;
Ruohonen, Laura

Publication type:

Article

Comparative proteome profiling of bovine and human Staphylococcus epidermidis strains for screening specifically expressed virulence and adaptation proteins.

Published in:

Proteomics, 2014, v. 14, n. 16, p. 1890, doi. 10.1002/pmic.201300275

By:

Siljamäki, Pia;
Varmanen, Pekka;
Kankainen, Matti;
Pyörälä, Satu;
Karonen, Taru;
Iivanainen, Antti;
Auvinen, Petri;
Paulin, Lars;
Laine, Pia K.;
Taponen, Suvi;
Simojoki, Heli;
Sukura, Antti;
Nyman, Tuula A.;
Savijoki, Kirsi

Publication type:

Article

T and NK cell abundance defines two distinct subgroups of renal cell carcinoma.

Published in:

OncoImmunology, 2022, v. 11, n. 1, p. 1, doi. 10.1080/2162402X.2021.1993042

By:

Moon Hee Lee;
Järvinen, Petrus;
Nísen, Harry;
Brück, Oscar;
Ilander, Mette;
Uski, Ilona;
Theodoropoulos, Jason;
Kankainen, Matti;
Mirtti, Tuomas;
Mustjoki, Satu;
Kreutzman, Anna

Publication type:

Article

Local treatment of a pleural mesothelioma tumor with ONCOS-102 induces a systemic antitumor CD8 T-cell response, prominent infiltration of CD8 lymphocytes and Th1 type polarization.

Published in:

OncoImmunology, 2014, v. 3, n. 10, p. N.PAG, doi. 10.4161/21624011.2014.958937

By:

Ranki, Tuuli;
Joensuu, Timo;
Jäger, Elke;
Karbach, Julia;
Wahle, Claudia;
Kairemo, Kalevi;
Alanko, Tuomo;
Partanen, Kaarina;
Turkki, Riku;
Linder, Nina;
Lundin, Johan;
Ristimäki, Ari;
Kankainen, Matti;
Hemminki, Akseli;
Backman, Charlotta;
Dienel, Kasper;
von Euler, Mikael;
Haavisto, Elina;
Hakonen, Tiina;
Juhila, Juuso

Publication type:

Article

Nonpathogenic Lactobacillus rhamnosus activates the inflammasome and antiviral responses in human macrophages.

Published in:

Gut Microbes, 2012, v. 3, n. 6, p. 510, doi. 10.4161/gmic.21736

By:

Miettinen, Minja;
Pietilä, Taija E.;
Kekkonen, Riina A.;
Kankainen, Matti;
Latvala, Sinikka;
Pirhonen, Jaana;
Österlund, Pamela;
Korpela, Riitta;
Julkunen, Ilkka

Publication type:

Article

MPEA—metabolite pathway enrichment analysis.

Published in:

Bioinformatics, 2011, v. 27, n. 13, p. 1878, doi. 10.1093/bioinformatics/btr278

By:

Kankainen, Matti;
Gopalacharyulu, Peddinti;
Holm, Liisa;
Orešič, Matej

Publication type:

Article

LOCP--locating pilus operons in Gram-positive bacteria.

Published in:

Bioinformatics, 2009, v. 25, n. 9, p. 1187, doi. 10.1093/bioinformatics/btp127

By:

Ilya Plyusnin;
Liisa Holm;
Matti Kankainen

Publication type:

Article

Effects of ellagitannin-rich berries on blood lipids, gut microbiota, and urolithin production in human subjects with symptoms of metabolic syndrome.

Published in:

Molecular Nutrition & Food Research, 2013, v. 57, n. 12, p. 2258, doi. 10.1002/mnfr.201300280

By:

Puupponen‐Pimiä, Riitta;
Seppänen‐Laakso, Tuulikki;
Kankainen, Matti;
Maukonen, Johanna;
Törrönen, Riitta;
Kolehmainen, Marjukka;
Leppänen, Tiina;
Moilanen, Eeva;
Nohynek, Liisa;
Aura, Anna‐Marja;
Poutanen, Kaisa;
Tómas‐Barberán, Francisco A.;
Espín, Juan C.;
Oksman‐Caldentey, Kirsi‐Marja

Publication type:

Article

Regulation of xylose metabolism in recombinant Saccharomyces cerevisiae.

Published in:

Microbial Cell Factories, 2008, v. 7, p. 1, doi. 10.1186/1475-2859-7-18

By:

Salusjärvi, Laura;
Kankainen, Matti;
Soliymani, Rabah;
Pitkänen, Juha-Pekka;
Penttilä, Merja;
Ruohonen, Laura

Publication type:

Article

Comparative genomics of Lactobacillus crispatus suggests novel mechanisms for the competitive exclusion of Gardnerella vaginalis.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 311, doi. 10.1186/1471-2164-15-1070

By:

Ojala, Teija;
Kankainen, Matti;
Castro, Joana;
Cerca, Nuno;
Edelman, Sanna;
Westerlund-Wikström, Benita;
Paulin, Lars;
Holm, Liisa;
Auvinen, Petri

Publication type:

Article

Association of tamoxifen resistance and lipid reprogramming in breast cancer.

Published in:

2018

By:

Hultsch, Susanne;
Kankainen, Matti;
Paavolainen, Lassi;
Kovanen, Ruusu-Maaria;
Ikonen, Elina;
Kangaspeska, Sara;
Kallioniemi, Olli;
Pietiäinen, Vilja

Publication type:

journal article

Hierarchical clustering in evaluating inflammatory upper airway phenotypes; increased symptoms in adults with allergic multimorbidity.

Published in:

Asian Pacific Journal of Allergy & Immunology, 2020, v. 38, n. 4, p. 239, doi. 10.12932/AP-170818-0395

By:

Hanif, Tanzeela;
Laulajainen-Hongisto, Anu;
Luukkainen, Annika;
Numminen, Jura;
Kääriäinen, Janne;
Myller, Jyri;
Kalogjera, Livije;
Huhtala, Heini;
Kankainen, Matti;
Renkonen, Risto;
Toppila-Salmi, Sanna

Publication type:

Article

Systems-level analysis of clinically different phenotypes of juvenile nasopharyngeal angiofibromas.

Published in:

Laryngoscope, 2012, v. 122, n. 12, p. 2728, doi. 10.1002/lary.23592

By:

Renkonen, Suvi;
Kankainen, Matti;
Hagström, Jaana;
Haglund, Caj;
Monni, Outi;
Mäkitie, Antti A.

Publication type:

Article

Corrigendum: Adult-Onset Anti-Citrullinated Peptide Antibody-Negative Destructive Rheumatoid Arthritis Is Characterized by a Disease-Specific CD8+ T Lymphocyte Signature.

Published in:

2021

By:

Kelkka, Tiina;
Savola, Paula;
Bhattacharya, Dipabarna;
Huuhtanen, Jani;
Lönnberg, Tapio;
Kankainen, Matti;
Paalanen, Kirsi;
Tyster, Mikko;
Lepistö, Maija;
Ellonen, Pekka;
Smolander, Johannes;
Eldfors, Samuli;
Yadav, Bhagwan;
Khan, Sofia;
Koivuniemi, Riitta;
Sjöwall, Christopher;
Elo, Laura L.;
Lähdesmäki, Harri;
Maeda, Yuka;
Nishikawa, Hiroyoshi

Publication type:

Correction Notice

Adult-Onset Anti-Citrullinated Peptide Antibody-Negative Destructive Rheumatoid Arthritis Is Characterized by a Disease-Specific CD8+ T Lymphocyte Signature.

Published in:

Frontiers in Immunology, 2020, v. 11, p. N.PAG, doi. 10.3389/fimmu.2020.578848

By:

Kelkka, Tiina;
Savola, Paula;
Bhattacharya, Dipabarna;
Huuhtanen, Jani;
Lönnberg, Tapio;
Kankainen, Matti;
Paalanen, Kirsi;
Tyster, Mikko;
Lepistö, Maija;
Ellonen, Pekka;
Smolander, Johannes;
Eldfors, Samuli;
Yadav, Bhagwan;
Khan, Sofia;
Koivuniemi, Riitta;
Sjöwall, Christopher;
Elo, Laura L.;
Lähdesmäki, Harri;
Maeda, Yuka;
Nishikawa, Hiroyashi

Publication type:

Article

Aggressive natural killer-cell leukemia mutational landscape and drug profiling highlight JAK-STAT signaling as therapeutic target.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03987-2

By:

Dufva, Olli;
Kankainen, Matti;
Kelkka, Tiina;
Sekiguchi, Nodoka;
Awad, Shady Adnan;
Eldfors, Samuli;
Yadav, Bhagwan;
Kuusanmäki, Heikki;
Malani, Disha;
Andersson, Emma I.;
Pietarinen, Paavo;
Saikko, Leena;
Kovanen, Panu E.;
Ojala, Teija;
Lee, Dean A.;
Loughran Jr., Thomas P.;
Nakazawa, Hideyuki;
Suzumiya, Junji;
Suzuki, Ritsuro;
Young Hyeh Ko

Publication type:

Article

Cancer-Associated Fibroblasts Modulate Transcriptional Signatures Involved in Proliferation, Differentiation and Metastasis in Head and Neck Squamous Cell Carcinoma.

Published in:

Cancers, 2021, v. 13, n. 13, p. 3361, doi. 10.3390/cancers13133361

By:

Wiechec, Emilia;
Magan, Mustafa;
Matic, Natasa;
Ansell-Schultz, Anna;
Kankainen, Matti;
Monni, Outi;
Johansson, Ann-Charlotte;
Roberg, Karin

Publication type:

Article

Comparison of Structural and Short Variants Detected by Linked-Read and Whole-Exome Sequencing in Multiple Myeloma.

Published in:

Cancers, 2021, v. 13, n. 6, p. 1212, doi. 10.3390/cancers13061212

By:

Kumar, Ashwini;
Adhikari, Sadiksha;
Kankainen, Matti;
Heckman, Caroline A.;
Cheang, Maggie C. U.

Publication type:

Article

Somatic mTOR mutation in clonally expanded T lymphocytes associated with chronic graft versus host disease.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16115-w

By:

Kim, Daehong;
Park, Giljun;
Huuhtanen, Jani;
Lundgren, Sofie;
Khajuria, Rajiv K.;
Hurtado, Ana M.;
Muñoz-Calleja, Cecilia;
Cardeñoso, Laura;
Gómez-García de Soria, Valle;
Chen-Liang, Tzu Hua;
Eldfors, Samuli;
Ellonen, Pekka;
Hannula, Sari;
Kankainen, Matti;
Bruck, Oscar;
Kreutzman, Anna;
Salmenniemi, Urpu;
Lönnberg, Tapio;
Jerez, Andrés;
Itälä-Remes, Maija

Publication type:

Article

Exome Sequencing Identifies Susceptibility Loci for Sarcoidosis Prognosis.

Published in:

Frontiers in Immunology, 2019, v. 10, p. 1, doi. 10.3389/fimmu.2019.02964

By:

Lahtela, Elisa;
Kankainen, Matti;
Sinisalo, Juha;
Selroos, Olof;
Lokki, Marja-Liisa

Publication type:

Article

OAB-019: CRISPR screens with single-cell transcriptome readout reveal potential mechanisms of response to natural killer cell treatment in multiple myeloma.

Published in:

Clinical Lymphoma, Myeloma & Leukemia, 2021, v. 21, p. S12, doi. 10.1016/S2152-2650(21)02093-0

By:

Gandolfi, Sara;
Dufva, Olli;
Huuhtanen, Jani;
Dashevsky, Olga;
Klievink, Jay;
Bouhlal, Jonas;
Scheffer, Michal;
Kankainen, Matti;
Simoes, Ricardo De Matos;
Mitsiades, Constantine;
Mustjoki, Satu

Publication type:

Article

The impact of RNA sequence library construction protocols on transcriptomic profiling of leukemia.

Published in:

BMC Genomics, 2017, v. 18, n. 1, p. 1, doi. 10.1186/s12864-017-4039-1

By:

Kumar, Ashwini;
Kankainen, Matti;
Parsons, Alun;
Kallioniemi, Olli;
Mattila, Pirkko;
Heckman, Caroline A.

Publication type:

Article

A novel partial de novo duplication of JARID2 gene causing a neurodevelopmental phenotype.

Published in:

Molecular Genetics & Genomic Medicine, 2022, v. 10, n. 11, p. 1, doi. 10.1002/mgg3.2037

By:

Viitasalo, Liisa;
Kettunen, Kaisa;
Kankainen, Matti;
Niemelä, Elina H.;
Kiiski, Kirsi

Publication type:

Article

Genomics of asthma, allergy and chronic rhinosinusitis: novel concepts and relevance in airway mucosa.

Published in:

Clinical & Translational Allergy, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13601-020-00347-6

By:

Laulajainen-Hongisto, Anu;
Lyly, Annina;
Hanif, Tanzeela;
Dhaygude, Kishor;
Kankainen, Matti;
Renkonen, Risto;
Donner, Kati;
Mattila, Pirkko;
Jartti, Tuomas;
Bousquet, Jean;
Kauppi, Paula;
Toppila-Salmi, Sanna

Publication type:

Article

Characterizing the Key Metabolic Pathways of the Neonatal Mouse Heart Using a Quantitative Combinatorial Omics Approach.

Published in:

Frontiers in Physiology, 2018, p. 1, doi. 10.3389/fphys.2018.00365

By:

Lalowski, Maciej M.;
Björk, Susann;
Finckenberg, Piet;
Soliymani, Rabah;
Tarkia, Miikka;
Calza, Giulio;
Blokhina, Daria;
Tulokas, Sari;
Kankainen, Matti;
Lakkisto, Päivi;
Baumann, Marc;
Kankuri, Esko;
Mervaala, Eero

Publication type:

Article

Vascular adhesion protein-1 defines a unique subpopulation of human hematopoietic stem cells and regulates their proliferation.

Published in:

Cellular & Molecular Life Sciences, 2021, v. 78, n. 23, p. 7851, doi. 10.1007/s00018-021-03977-6

By:

Iftakhar-e-Khuda, Imtiaz;
Pessia, Alberto;
Zheng, Shuyu;
Kankainen, Matti;
Kontro, Mika;
Karikoski, Marika;
Laurila, Juha;
Gerke, Heidi;
Tadayon, Sina;
Hollmén, Maija;
Tang, Jing;
Imhof, Beat A.;
Salmi, Marko;
Jalkanen, Sirpa

Publication type:

Article

Loss of Rad51c accelerates tumourigenesis in sebaceous glands of Trp53-mutant mice.

Published in:

Journal of Pathology, 2015, v. 235, n. 1, p. 136, doi. 10.1002/path.4455

By:

Tumiati, Manuela;
Hemmes, Annabrita;
Uusivirta, Sanna;
Koopal, Sonja;
Kankainen, Matti;
Lehtonen, Eero;
Kuznetsov, Sergey G

Publication type:

Article