Works by Kanamaru, Shuji

Results: 28

Bionanotube Tetrapod Assembly by In Situ Synthesis of a Gold Nanocluster with (Gp5–His6)3 from Bacteriophage T4We thank Prof. S. Aono and S. Inagaki (Okazaki Institute for Integrative Bioscience, National Institutes of Natural Sciences, Japan) for suggestions. This work was supported by the Advanced Technology Institute, Grants-in-Aid for Scientific Research (grants no. 18685019 to T.U. and no. 16074208 on Priority Area “Chemistry of Coordination Space” to Y.W.) from the Ministry of Education, Science, Sports and Culture, Japan, and a grant from the 21st Century COE program “Establishment of COE on Materials Science: Elucidation and Creation of Molecular Functions” of Nagoya University for T.K. Gp5=gene product 5.

Published in:

Angewandte Chemie, 2006, v. 118, n. 27, p. 4620, doi. 10.1002/ange.200504588

By:

Takafumi Ueno;
Tomomi Koshiyama;
Toshimitsu Tsuruga;
Toshiaki Goto;
Shuji Kanamaru;
Fumio Arisaka;
Yoshihito Watanabe

Publication type:

Article

Construction of a Ball-and-Spike Protein SupramoleculeWe are grateful to T. Douglas for a gift of the LisDps clone. A part of this work was supported by the Nanotechnology Support Project of the Ministry of Education, Culture, Sports, Science, and Technology (MEXT), Japan, at the Research Center for Ultrahigh Voltage Electron Microscopy, Osaka University.

Published in:

Angewandte Chemie, 2006, v. 118, n. 17, p. 2791, doi. 10.1002/ange.200504018

By:

Kenji Sugimoto;
Shuji Kanamaru;
Kenji Iwasaki;
Fumio Arisaka;
Ichiro Yamashita

Publication type:

Article

Acetophenone reductase with extreme stability against a high concentration of organic compounds or an elevated temperature.

Published in:

Applied Microbiology & Biotechnology, 2013, v. 97, n. 24, p. 10413, doi. 10.1007/s00253-013-4801-5

By:

Yamamoto, Takuro;
Nakata, Yasuo;
Cao, Chen;
Sugiyama, Yosuke;
Asanuma, Yoshihisa;
Kanamaru, Shuji;
Matsuda, Tomoko

Publication type:

Article

Acetophenone reductase with extreme stability against a high concentration of organic compounds or an elevated temperature.

Published in:

Applied Microbiology & Biotechnology, 2013, v. 97, n. 23, p. 10413, doi. 10.1007/s00253-013-4801-5

By:

Yamamoto, Takuro;
Nakata, Yasuo;
Cao, Chen;
Sugiyama, Yosuke;
Asanuma, Yoshihisa;
Kanamaru, Shuji;
Matsuda, Tomoko

Publication type:

Article

Purification and characterization of acetophenone reductase with excellent enantioselectivity from Geotrichum candidum NBRC 4597.

Published in:

Applied Microbiology & Biotechnology, 2010, v. 86, n. 2, p. 625, doi. 10.1007/s00253-009-2329-5

By:

Nakata, Yasuo;
Fukae, Takuro;
Kanamori, Ryoji;
Kanamaru, Shuji;
Matsuda, Tomoko

Publication type:

Article

Structure and Function of the T4 Spackle Protein Gp61.3.

Published in:

Viruses (1999-4915), 2020, v. 12, n. 10, p. 1070, doi. 10.3390/v12101070

By:

Kanamaru, Shuji;
Uchida, Kazuya;
Nemoto, Mai;
Fraser, Alec;
Arisaka, Fumio;
Leiman, Petr G.

Publication type:

Article

Crystal Structure of the Carboxy-Terminal Region of the Bacteriophage T4 Proximal Long Tail Fiber Protein Gp34.

Published in:

Viruses (1999-4915), 2017, v. 9, n. 7, p. 168, doi. 10.3390/v9070168

By:

Granell, Meritxell;
Mikiyoshi Namura;
Alvira, Sara;
Shuji Kanamaru;
van Raaij, Mark J.

Publication type:

Article

Intracellular Protein Delivery System with Protein Needle-GFP Construct.

Published in:

Chemistry Letters, 2014, v. 43, n. 9, p. 1505, doi. 10.1246/cl.140481

By:

Hiroshi Inaba;
Sanghamitra, Nusrat J. M.;
Toshihiro Fukai;
Takahiro Matsumoto;
Kaname Nishijo;
Shuji Kanamaru;
Fumio Arisaka;
Susumu Kitagawa;
Takafumi Ueno

Publication type:

Article

Crystal structure of Cex1p reveals the mechanism of tRNA trafficking between nucleus and cytoplasm.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 6, p. 3901, doi. 10.1093/nar/gkt010

By:

Nozawa, Kayo;
Ishitani, Ryuichiro;
Yoshihisa, Tohru;
Sato, Mamoru;
Arisaka, Fumio;
Kanamaru, Shuji;
Dohmae, Naoshi;
Mangroo, Dev;
Senger, Bruno;
Becker, Hubert D.;
Nureki, Osamu

Publication type:

Article

Sequential Assembly of the Wedge of the Baseplate of Phage T4 in the Presence and Absence of Gp11 as Monitored by Analytical Ultracentrifugation.

Published in:

Macromolecular Bioscience, 2010, v. 10, n. 7, p. 808, doi. 10.1002/mabi.201000042

By:

Yap, Moh Lan;
Mio, Kazuhiro;
Ali, Said;
Minton, Allen;
Kanamaru, Shuji;
Arisaka, Fumio

Publication type:

Article

Cell-free protein crystallization for nanocrystal structure determination.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-19681-9

By:

Abe, Satoshi;
Tanaka, Junko;
Kojima, Mariko;
Kanamaru, Shuji;
Hirata, Kunio;
Yamashita, Keitaro;
Kobayashi, Ayako;
Ueno, Takafumi

Publication type:

Article

Construction of Robust Bio-nanotubes using the Controlled Self-Assembly of Component Proteins of Bacteriophage T4.

Published in:

Small, 2010, v. 6, n. 17, p. 1873, doi. 10.1002/smll.201000772

By:

Yokoi, Norihiko;
Inaba, Hiroshi;
Terauchi, Makoto;
Stieg, Adam Z.;
Sanghamitra, Nusrat J. M.;
Koshiyama, Tomomi;
Yutani, Katsuhide;
Kanamaru, Shuji;
Arisaka, Fumio;
Hikage, Tatsuo;
Suzuki, Atsuo;
Yamane, Takashi;
Gimzewski, James K.;
Watanabe, Yoshihito;
Kitagawa, Susumu;
Ueno, Takafumi

Publication type:

Article

Protein engineering: Construction of Robust Bio-nanotubes using the Controlled Self-Assembly of Component Proteins of Bacteriophage T4 (Small 17/2010).

Published in:

Small, 2010, v. 6, n. 17, p. n/a, doi. 10.1002/smll.201090056

By:

Yokoi, Norihiko;
Inaba, Hiroshi;
Terauchi, Makoto;
Stieg, Adam Z.;
Sanghamitra, Nusrat J. M.;
Koshiyama, Tomomi;
Yutani, Katsuhide;
Kanamaru, Shuji;
Arisaka, Fumio;
Hikage, Tatsuo;
Suzuki, Atsuo;
Yamane, Takashi;
Gimzewski, James K.;
Watanabe, Yoshihito;
Kitagawa, Susumu;
Ueno, Takafumi

Publication type:

Article

Molecular Design of Heteroprotein Assemblies Providing a Bionanocup as a Chemical Reactor.

Published in:

Small, 2008, v. 4, n. 1, p. 50, doi. 10.1002/smll.200700855

By:

Koshiyama, Tomomi;
Yokoi, Norihiko;
Ueno, Takafumi;
Kanamaru, Shuji;
Nagano, Shingo;
Shiro, Yoshitsugu;
Arisaka, Fumio;
Watanabe, Yoshihito

Publication type:

Article

Examination of yield, bacteriolytic activity and cold storage of linker deletion mutants based on endolysin S6_ORF93 derived from Staphylococcus giant bacteriophage S6.

Published in:

PLoS ONE, 2024, v. 19, n. 10, p. 1, doi. 10.1371/journal.pone.0310962

By:

Munetomo, Sosuke;
Uchiyama, Jumpei;
Takemura-Uchiyama, Iyo;
Wanganuttara, Thamonwan;
Yamamoto, Yumiko;
Tsukui, Toshihiro;
Hagiya, Hideharu;
Kanamaru, Shuji;
Kanda, Hideyuki;
Matsushita, Osamu

Publication type:

Article

Structure and properties of the C-terminal β-helical domain of VgrG protein from Escherichia coli O157.

Published in:

Journal of Biochemistry, 2014, v. 155, n. 3, p. 173, doi. 10.1093/jb/mvt109

By:

Uchida, Kazuya;
Leiman, Petr G.;
Arisaka, Fumio;
Kanamaru, Shuji

Publication type:

Article

Intermolecular interactions and conformation of antibody dimers present in IgG1 biopharmaceuticals.

Published in:

Journal of Biochemistry, 2014, v. 155, n. 1, p. 63, doi. 10.1093/jb/mvt095

By:

Iwura, Takafumi;
Fukuda, Jun;
Yamazaki, Katsuyoshi;
Kanamaru, Shuji;
Arisaka, Fumio

Publication type:

Article

Crystallization of the carboxy-terminal region of the bacteriophage T4 proximal long tail fibre protein gp34.

Published in:

Acta Crystallographica: Section F, Structural Biology Communications, 2014, v. 70, n. 7, p. 970, doi. 10.1107/S2053230X14010449

By:

Granell, Meritxell;
Namura, Mikiyoshi;
Alvira, Sara;
Garcia-Doval, Carmela;
Singh, Abhimanyu K.;
Gutsche, Irina;
van Raaij, Mark J.;
Kanamaru, Shuji

Publication type:

Article

Bionanotube Tetrapod Assembly by In Situ Synthesis of a Gold Nanocluster with (Gp5–His6)3 from Bacteriophage T4We thank Prof. S. Aono and S. Inagaki (Okazaki Institute for Integrative Bioscience, National Institutes of Natural Sciences, Japan) for suggestions. This work was supported by the Advanced Technology Institute, Grants-in-Aid for Scientific Research (grants no. 18685019 to T.U. and no. 16074208 on Priority Area “Chemistry of Coordination Space” to Y.W.) from the Ministry of Education, Science, Sports and Culture, Japan, and a grant from the 21st Century COE program “Establishment of COE on Materials Science: Elucidation and Creation of Molecular Functions” of Nagoya University for T.K. Gp5=gene product 5.

Published in:

Angewandte Chemie International Edition, 2006, v. 45, n. 27, p. 4508, doi. 10.1002/anie.200504588

By:

Takafumi Ueno;
Tomomi Koshiyama;
Toshimitsu Tsuruga;
Toshiaki Goto;
Shuji Kanamaru;
Fumio Arisaka;
Yoshihito Watanabe

Publication type:

Article

Construction of a Ball-and-Spike Protein SupramoleculeWe are grateful to T. Douglas for a gift of the LisDps clone. A part of this work was supported by the Nanotechnology Support Project of the Ministry of Education, Culture, Sports, Science, and Technology (MEXT), Japan, at the Research Center for Ultrahigh Voltage Electron Microscopy, Osaka University.

Published in:

Angewandte Chemie International Edition, 2006, v. 45, n. 17, p. 2725, doi. 10.1002/anie.200504018

By:

Kenji Sugimoto;
Shuji Kanamaru;
Kenji Iwasaki;
Fumio Arisaka;
Ichiro Yamashita

Publication type:

Article

Three-dimensional structure of bacteriophage T4 baseplate.

Published in:

Nature Structural Biology, 2003, v. 10, n. 9, p. 688, doi. 10.1038/nsb970

By:

Kostyuchenko, Victor A;
Leiman, Petr G;
Chipman, Paul R;
Kanamaru, Shuji;
van Raaij, Mark J;
Arisaka, Fumio;
Mesyanzhinov, Vadim V;
Rossmann, Michael G

Publication type:

Article

Bacteriophage f29 scaffolding protein gp7 before and after prohead assembly.

Published in:

Nature Structural Biology, 2003, v. 10, n. 7, p. 572, doi. 10.1038/nsb939

By:

Morais, Marc C;
Kanamaru, Shuji;
Badasso, Mohammed O;
Koti, Jaya S;
Owen, Barbara A L;
McMurray, Cynthia T;
Anderson, Dwight L;
Rossmann, Michael G

Publication type:

Article

NADH oxidase and alkyl hydroperoxide reductase subunit C (peroxiredoxin) from Amphibacillus xylanus form an oligomeric assembly.

Published in:

FEBS Open Bio, 2015, v. 5, p. 124, doi. 10.1016/j.fob.2015.01.005

By:

Arai, Toshiaki;
Kimata, Shinya;
Mochizuki, Daichi;
Hara, Keita;
Zako, Tamotsu;
Odaka, Masafumi;
Yohda, Masafumi;
Arisaka, Fumio;
Kanamaru, Shuji;
Matsumoto, Takashi;
Yajima, Shunsuke;
Sato, Junichi;
Kawasaki, Shinji;
Niimura, Youichi

Publication type:

Article

The Swi5–Sfr1 complex regulates Dmc1- and Rad51-driven DNA strand exchange proceeding through two distinct three-stranded intermediates by different mechanisms.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12517, doi. 10.1093/nar/gkae841

By:

Ito, Kentaro;
Maki, Takahisa;
Kanamaru, Shuji;
Takahashi, Masayuki;
Iwasaki, Hiroshi

Publication type:

Article

RecA requires two molecules of Mg<sup>2+</sup> ions for its optimal strand exchange activity in vitro.

Published in:

Nucleic Acids Research, 2018, v. 46, n. 5, p. 2548, doi. 10.1093/nar/gky048

By:

Kim, Raeyeong;
Kanamaru, Shuji;
Mikawa, Tsutomu;
Prévost, Chantal;
Ishii, Kentaro;
Ito, Kentaro;
Uchiyama, Susumu;
Oda, Masayuki;
Iwasaki, Hiroshi;
Kim, Seog K

Publication type:

Article

Morphogenesis of the T4 tail and tail fibers.

Published in:

Virology Journal, 2010, v. 7, p. 355, doi. 10.1186/1743-422X-7-355

By:

Leiman, Petr G.;
Arisaka, Fumio;
van Raaij, Mark J.;
Kostyuchenko, Victor A.;
Aksyuk, Anastasia A.;
Kanamaru, Shuji;
Rossmann, Michael G.

Publication type:

Article

Structure of the cell-puncturing device of bacteriophage T4.

Published in:

Nature, 2002, v. 415, n. 6871, p. 553, doi. 10.1038/415553a

By:

Kanamaru, Shuji;
Leiman, Petr G.;
Kostyuchenko, Victor A.;
Chipman, Paul R.;
Mesyanzhinov, Vadim V.;
Arisaka, Fumio;
Rossmann, Michael G.

Publication type:

Article

Real-time tracking reveals catalytic roles for the two DNA binding sites of Rad51.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16750-3

By:

Ito, Kentaro;
Murayama, Yasuto;
Kurokawa, Yumiko;
Kanamaru, Shuji;
Kokabu, Yuichi;
Maki, Takahisa;
Mikawa, Tsutomu;
Argunhan, Bilge;
Tsubouchi, Hideo;
Ikeguchi, Mitsunori;
Takahashi, Masayuki;
Iwasaki, Hiroshi

Publication type:

Article