Works by Kalyana-Sundaram, Shanker

Results: 21

Characterization of Gene Expression Phenotype in Amyotrophic Lateral Sclerosis Monocytes.

Published in:

JAMA Neurology, 2017, v. 74, n. 6, p. 677, doi. 10.1001/jamaneurol.2017.0357

By:

Weihua Zhao;
Beers, David R.;
Hooten, Kristopher G.;
Sieglaff, Douglas H.;
Aijun Zhang;
Kalyana-Sundaram, Shanker;
Traini, Christopher M.;
Halsey, Wendy S.;
Hughes, Ashley M.;
Sathe, Ganesh M.;
Livi, George P.;
Guo-Huang Fan;
Appel, Stanley H.

Publication type:

Article

Prognostic Significance of Proteomics-Discovered Circulating Inflammatory Biomarkers in Patients With Pulmonary Arterial Hypertension.

Published in:

Journal of the American Heart Association, 2024, v. 13, n. 12, p. 1, doi. 10.1161/JAHA.123.032888

By:

Yokokawa, Tetsuro;
Boucherat, Olivier;
Martineau, Sandra;
Lemay, Sarah-Eve;
Bonnet, Sandra Breuils;
Krishna, Vinod;
Kalyana Sundaram, Shanker;
Jeyaseelan, Jey;
Potus, François;
Bonnet, Sébastien;
Provencher, Steeve

Publication type:

Article

miRConnect 2.0: identification of oncogenic, antagonistic miRNA families in three human cancers.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-179

By:

Hua, Youjia;
Larsen, Niels;
Kalyana-Sundaram, Shanker;
Kjems, Jørgen;
Chinnaiyan, Arul M.;
Peter, Marcus E.

Publication type:

Article

Corrigendum: Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression.

Published in:

Nature, 2013, v. 499, n. 7459, p. 504, doi. 10.1038/nature12288

By:

Sreekumar, Arun;
Poisson, Laila M.;
Rajendiran, Thekkelnaycke M.;
Khan, Amjad P.;
Cao, Qi;
Yu, Jindan;
Laxman, Bharathi;
Mehra, Rohit;
Lonigro, Robert J.;
Li, Yong;
Nyati, Mukesh K.;
Ahsan, Aarif;
Kalyana-Sundaram, Shanker;
Han, Bo;
Cao, Xuhong;
Byun, Jaeman;
Omenn, Gilbert S.;
Ghosh, Debashis;
Pennathur, Subramaniam;
Alexander, Danny C.

Publication type:

Article

Transcriptome sequencing to detect gene fusions in cancer.

Published in:

2009

By:

Maher, Christopher A.;
Kumar-Sinha, Chandan;
Cao, Xuhong;
Kalyana-Sundaram, Shanker;
Han, Bo;
Jing, Xiaojun;
Sam, Lee;
Barrette, Terrence;
Palanisamy, Nallasivam;
Chinnaiyan, Arul M.

Publication type:

Letter

Metabolomic profiles delineate potential role for sarcosine in prostate cancer progression.

Published in:

Nature, 2009, v. 457, n. 7231, p. 910, doi. 10.1038/nature07762

By:

Sreekumar, Arun;
Poisson, Laila M.;
Rajendiran, Thekkelnaycke M.;
Khan, Amjad P.;
Cao, Qi;
Yu, Jindan;
Laxman, Bharathi;
Mehra, Rohit;
Lonigro, Robert J.;
Li, Yong;
Nyati, Mukesh K.;
Ahsan, Aarif;
Kalyana-Sundaram, Shanker;
Han, Bo;
Cao, Xuhong;
Byun, Jaeman;
Omenn, Gilbert S.;
Ghosh, Debashis;
Pennathur, Subramaniam;
Alexander, Danny C.

Publication type:

Article

Personalized Oncology Through Integrative High-Throughput Sequencing: A Pilot Study.

Published in:

Science Translational Medicine, 2011, v. 3, n. 111, p. 1, doi. 10.1126/scitranslmed.3003161

By:

Roychowdhury, Sameek;
Iyer, Matthew K.;
Robinson, Dan R.;
Lonigro, Robert J.;
Yi-Mi Wu;
Xuhong Cao;
Kalyana-Sundaram, Shanker;
Lee Sam;
Balbin, O. Alejandro;
Quist, Michael J.;
Barrette, Terrence;
Everett, Jessica;
Siddiqui, Javed;
Kunju, Lakshmi P.;
Navone, Nora;
Araujo, John C.;
Troncoso, Patricia;
Logothetis, Christopher J.;
Innis, Jeffrey W.;
Smith, David C.

Publication type:

Article

Integrative molecular concept modeling of prostate cancer progression.

Published in:

Nature Genetics, 2007, v. 39, n. 1, p. 41, doi. 10.1038/ng1935

By:

Tomlins, Scott A.;
Mehra, Rohit;
Rhodes, Daniel R.;
Cao, Xuhong;
Wang, Lei;
Dhanasekaran, Saravana M.;
Kalyana-Sundaram, Shanker;
Wei, John T.;
Rubin, Mark A.;
Pienta, Kenneth J.;
Shah, Rajal B.;
Chinnaiyan, Arul M.

Publication type:

Article

Mining for regulatory programs in the cancer transcriptome.

Published in:

Nature Genetics, 2005, v. 37, n. 6, p. 579, doi. 10.1038/ng1578

By:

Rhodes, Daniel R.;
Kalyana-Sundaram, Shanker;
Mahavisno, Vasudeva;
Barrette, Terrence R.;
Ghosh, Debashis;
Chinnaiyan, Arul M.

Publication type:

Article

Functionally recurrent rearrangements of the MAST kinase and Notch gene families in breast cancer.

Published in:

Nature Medicine, 2011, v. 17, n. 12, p. 1646, doi. 10.1038/nm.2580

By:

Robinson, Dan R;
Kalyana-Sundaram, Shanker;
Wu, Yi-Mi;
Shankar, Sunita;
Cao, Xuhong;
Ateeq, Bushra;
Asangani, Irfan A;
Iyer, Matthew;
Maher, Christopher A;
Grasso, Catherine S;
Lonigro, Robert J;
Quist, Michael;
Siddiqui, Javed;
Mehra, Rohit;
Jing, Xiaojun;
Giordano, Thomas J;
Sabel, Michael S;
Kleer, Celina G;
Palanisamy, Nallasivam;
Natrajan, Rachael

Publication type:

Article

Rearrangements of the RAF kinase pathway in prostate cancer, gastric cancer and melanoma.

Published in:

Nature Medicine, 2010, v. 16, n. 7, p. 793, doi. 10.1038/nm.2166

By:

Palanisamy, Nallasivam;
Ateeq, Bushra;
Kalyana-Sundaram, Shanker;
Pflueger, Dorothee;
Ramnarayanan, Kalpana;
Shankar, Sunita;
Han, Bo;
Qi Cao;
Xuhong Cao;
Suleman, Khalid;
Kumar-Sinha, Chandan;
Dhanasekaran, Saravana M;
Ying-bei Chen;
Esgueva, Raquel;
Banerjee, Samprit;
LaFargue, Christopher J.;
Siddiqui, Javed;
Demichelis, Francesca;
Moeller, Peter;
Bismar, Tarek A.

Publication type:

Article

Phase I dose-escalation trial of the oral AKT inhibitor uprosertib in combination with the oral MEK1/MEK2 inhibitor trametinib in patients with solid tumors.

Published in:

2020

By:

Tolcher, Anthony W.;
Kurzrock, Razelle;
Valero, Vincente;
Gonzalez, Rene;
Heist, Rebecca S.;
Tan, Antoinette R.;
Means-Powell, Julie;
Werner, Theresa L.;
Becerra, Carlos;
Wang, Chenxi;
Leonowens, Cathrine;
Kalyana-Sundaram, Shanker;
Kleha, Joseph F.;
Gauvin, Jennifer;
D'Amelio, Anthony M.;
Ellis, Catherine;
Ibrahim, Nageatte;
Yan, Li;
D'Amelio, Anthony M Jr

Publication type:

journal article

Landscape of gene fusions in epithelial cancers: seq and ye shall find.

Published in:

Genome Medicine, 2015, v. 7, p. 1, doi. 10.1186/s13073-015-0252-1

By:

Kumar-Sinha, Chandan;
Kalyana-Sundaram, Shanker;
Chinnaiyan, Arul M.

Publication type:

Article

Gene Fusion Markup Language: a prototype for exchanging gene fusion data.

Published in:

BMC Bioinformatics, 2012, v. 13, n. 1, p. 1, doi. 10.1186/1471-2105-13-269

By:

Kalyana-Sundaram, Shanker;
Shanmugam, Achiraman;
Chinnaiyan1, Arul M.

Publication type:

Article

HPeak: an HMM-based algorithm for definingread-enriched regions in ChIP-Seq data.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 369, doi. 10.1186/1471-2105-11-369

By:

Qin, Zhaohui S.;
Jianjun Yu;
Jincheng Shen;
Maher, Christopher A.;
Ming Hu;
Kalyana-Sundaram, Shanker;
Jindan Yu;
Chinnaiyan, Arul M.

Publication type:

Article

Transcriptome meta-analysis of lung cancer reveals recurrent aberrations in NRG1 and Hippo pathway genes.

Published in:

Nature Communications, 2014, v. 5, n. 12, p. 5893, doi. 10.1038/ncomms6893

By:

Dhanasekaran, Saravana M.;
Alejandro Balbin, O;
Chen, Guoan;
Nadal, Ernest;
Kalyana-Sundaram, Shanker;
Pan, Jincheng;
Veeneman, Brendan;
Cao, Xuhong;
Malik, Rohit;
Vats, Pankaj;
Wang, Rui;
Huang, Stephanie;
Zhong, Jinjie;
Jing, Xiaojun;
Iyer, Matthew;
Wu, Yi-Mi;
Harms, Paul W.;
Lin, Jules;
Reddy, Rishindra;
Brennan, Christine

Publication type:

Article

Heat Shock Protein Beta-1 Modifies Anterior to Posterior Purkinje Cell Vulnerability in a Mouse Model of Niemann-Pick Type C Disease.

Published in:

PLoS Genetics, 2016, v. 12, n. 5, p. 1, doi. 10.1371/journal.pgen.1006042

By:

Chung, Chan;
Elrick, Matthew J.;
Dell’Orco, James M.;
Qin, Zhaohui S.;
Kalyana-Sundaram, Shanker;
Chinnaiyan, Arul M.;
Shakkottai, Vikram G.;
Lieberman, Andrew P.

Publication type:

Article

Probabilistic model of the human protein-protein interaction network.

Published in:

Nature Biotechnology, 2005, v. 23, n. 8, p. 951, doi. 10.1038/nbt1103

By:

Rhodes, Daniel R.;
Tomlins, Scott A.;
Varambally, Sooryanarayana;
Mahavisno, Vasudeva;
Barrette, Terrence;
Kalyana-Sundaram, Shanker;
Ghosh, Debashis;
Pandey, Akhilesh;
Chinnaiyan, Arul M.

Publication type:

Article

Activating ESR1 mutations in hormone-resistant metastatic breast cancer.

Published in:

Nature Genetics, 2013, v. 45, n. 12, p. 1446, doi. 10.1038/ng.2823

By:

Robinson, Dan R;
Wu, Yi-Mi;
Vats, Pankaj;
Su, Fengyun;
Lonigro, Robert J;
Cao, Xuhong;
Kalyana-Sundaram, Shanker;
Wang, Rui;
Ning, Yu;
Hodges, Lynda;
Gursky, Amy;
Siddiqui, Javed;
Tomlins, Scott A;
Roychowdhury, Sameek;
Pienta, Kenneth J;
Kim, Scott Y;
Roberts, J Scott;
Rae, James M;
Van Poznak, Catherine H;
Hayes, Daniel F

Publication type:

Article

Identification of recurrent NAB2-STAT6 gene fusions in solitary fibrous tumor by integrative sequencing.

Published in:

Nature Genetics, 2013, v. 45, n. 2, p. 180, doi. 10.1038/ng.2509

By:

Robinson, Dan R;
Wu, Yi-Mi;
Kalyana-Sundaram, Shanker;
Cao, Xuhong;
Lonigro, Robert J;
Sung, Yun-Shao;
Chen, Chun-Liang;
Zhang, Lei;
Wang, Rui;
Su, Fengyun;
Iyer, Matthew K;
Roychowdhury, Sameek;
Siddiqui, Javed;
Pienta, Kenneth J;
Kunju, Lakshmi P;
Talpaz, Moshe;
Mosquera, Juan Miguel;
Singer, Samuel;
Schuetze, Scott M;
Antonescu, Cristina R

Publication type:

Article

Time Is Running Out in Pulmonary Arterial Hypertension: The Epigenetic Clock Is Clicking.

Published in:

American Journal of Respiratory Cell & Molecular Biology, 2024, v. 70, n. 2, p. 140, doi. 10.1165/rcmb.2023-0335le

By:

El Kabbout, Reem;
Azhar, Nabil;
Breuils-Bonnet, Sandra;
Krishna, Vinod;
Kalyana-Sundaram, Shanker;
Boucherat, Olivier;
Provencher, Steeve;
Bonnet, Sébastien;
Potus, François

Publication type:

Article