Works by Kallioniemi, Olli-P.

Results: 36

Identification of structural features in chemicals associated with cancer drug response: a systematic data-driven analysis.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i497, doi. 10.1093/bioinformatics/btu456

By:

Khan, Suleiman A.;
Virtanen, Seppo;
Kallioniemi, Olli P.;
Wennerberg, Krister;
Poso, Antti;
Kaski, Samuel

Publication type:

Article

Association of C- erbB-2 protein over-expression with high rate of cell proliferation, increased risk of visceral metastasis and poor long-term survival in breast cancer.

Published in:

International Journal of Cancer, 1991, v. 49, n. 5, p. 650, doi. 10.1002/ijc.2910490504

By:

Kallioniemi, Olli-P.;
Holli, Kaija;
Visakorpi, Tapio;
Koivula, Timo;
Helin, Heikki H.;
Isola, Jorma J.

Publication type:

Article

Haplotype analysis in Icelandic and Finnish BRCA2 999del5 breast cancer families.

Published in:

European Journal of Human Genetics, 2001, v. 9, n. 10, p. 773, doi. 10.1038/sj.ejhg.5200717

By:

Barkardottir, Rosa B;
Sarantaus, Laura;
Arason, Adalgeir;
Vehmanen, Paula;
Bendahl, Pär-Ola;
Kainu, Tommi;
Syrjäkoski, Kirsi;
Krahe, Ralf;
Huusko, Pia;
Pyrhönen, Seppo;
Holli, Kaija;
Kallioniemi, Olli-P;
Egilsson, Valgardur;
Kere, Juha;
Nevanlinna, Heli

Publication type:

Article

cDNA and tissue microarray technologies for high-throughput molecular oncology research.

Published in:

1999

By:

Kallioniemi, Olli-P.

Publication type:

Abstract

Evidence for a prostate cancer susceptibility locus on the X chromosome.

Published in:

Nature Genetics, 1998, v. 20, n. 2, p. 175, doi. 10.1038/2477

By:

Xu, Jianfeng;
Meyers, Deborah;
Freije, Diha;
Isaacs, Sarah;
Wiley, Kathy;
Nusskern, Deborah;
Ewing, Charles;
Wilkens, Eric;
Bujnovszky, Piroska;
Bova, G. Steven;
Walsh, Patrick;
Isaacs, William;
Schleutker, Johanna;
Matikainen, Mika;
Tammela, Teuvo;
Visakorpi, Tapio;
Kallioniemi, Olli-P.;
Berry, Rebecca;
Schaid, Daniel

Publication type:

Article

Cloning of BCAS3 (17q23) and BCAS4 (20q13) genes that undergo amplification, overexpression, and fusion in breast cancer.

Published in:

Genes, Chromosomes & Cancer, 2002, v. 35, n. 4, p. 311, doi. 10.1002/gcc.10121

By:

Bärlund, Maarit;
Monni, Outi;
Weaver, J. Donald;
Kauraniemi, Päivikki;
Sauter, Guido;
Heiskanen, Mervi;
Kallioniemi, Olli-P.;
Kallioniemi, Anne

Publication type:

Article

Somatic genetic alterations in BRCA2-associated and sporadic male breast cancer.

Published in:

Genes, Chromosomes & Cancer, 1999, v. 24, n. 1, p. 56, doi. 10.1002/(SICI)1098-2264(199901)24:1<56::AID-GCC8>3.0.CO;2-X

By:

Tirkkonen, Mika;
Kainu, Tommi;
Loman, Niklas;
Jóhannsson, Óskar T.;
Olsson, Håkan;
Barkardóttir, Rósa B.;
Kallioniemi, Olli-P.;
Borg, Åke

Publication type:

Article

Molecular cytogenetics of primary breast cancer by CGH.

Published in:

Genes, Chromosomes & Cancer, 1998, v. 21, n. 3, p. 177, doi. 10.1002/(SICI)1098-2264(199803)21:3<177::AID-GCC1>3.0.CO;2-X

By:

Tirkkonen, Mika;
Tanner, Minna;
Karhu, Ritva;
Kallioniemi, Anne;
Isola, Jorma;
Kallioniemi, Olli-P.

Publication type:

Article

Comparative genomic hybridization reveals frequent gains of 20q, 8q, 11q, 12p, and 17q, and losses of 18q, 9p, and 15q in pancreatic cancer.

Published in:

Genes, Chromosomes & Cancer, 1997, v. 20, n. 4, p. 383, doi. 10.1002/(SICI)1098-2264(199712)20:4<383::AID-GCC10>3.0.CO;2-O

By:

Mahlamäki, Eija H.;
Höglund, Mattias;
Gorunova, Ludmila;
Karhu, Ritva;
Dawiskiba, Sigmund;
Andrén-Sandberg, Åke;
Kallioniemi, Olli-P.;
Johansson, Bertil

Publication type:

Article

Frequent loss of the 11q14-24 region in chronic lymphocytic leukemia: A study by comparative genomic hybridization.

Published in:

Genes, Chromosomes & Cancer, 1997, v. 19, n. 4, p. 286, doi. 10.1002/(SICI)1098-2264(199708)19:4<286::AID-GCC12>3.0.CO;2-E

By:

Karhu, Ritva;
Knuutila, Sakari;
Kallioniemi, Olli-P.;
Siitonen, Sanna;
Aine, Risto;
Vilpo, Leena;
Vilpo, Juhani

Publication type:

Article

Identification of gains and losses of DNA sequences in primary bladder cancer by comparative genomic hybridization.

Published in:

Genes, Chromosomes & Cancer, 1995, v. 12, n. 3, p. 213, doi. 10.1002/gcc.2870120309

By:

Kallioniemi, Anne;
Kallioniemi, Olli-P.;
Citro, Gil;
Sauter, Guido;
Devries, Sandy;
Kerschmann, Russell;
Caroll, Peter;
Waldman, Fred

Publication type:

Article

Optimizing comparative genomic hybridization for analysis of DNA sequence copy number changes in solid tumors.

Published in:

Genes, Chromosomes & Cancer, 1994, v. 10, n. 4, p. 231, doi. 10.1002/gcc.2870100403

By:

Kallioniemi, Olli-P.;
Kallioniemi, Anne;
Piper, Jim;
Isola, Jorma;
Waldman, Fred M.;
Gray, Joe W.;
Pinkel, Dan

Publication type:

Article

Integrative multi-omics and drug response profiling of childhood acute lymphoblastic leukemia cell lines.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29224-5

By:

Leo, Isabelle Rose;
Aswad, Luay;
Stahl, Matthias;
Kunold, Elena;
Post, Frederik;
Erkers, Tom;
Struyf, Nona;
Mermelekas, Georgios;
Joshi, Rubin Narayan;
Gracia-Villacampa, Eva;
Östling, Päivi;
Kallioniemi, Olli P.;
Tamm, Katja Pokrovskaja;
Siavelis, Ioannis;
Lehtiö, Janne;
Vesterlund, Mattias;
Jafari, Rozbeh

Publication type:

Article

Biochip technologies in cancer research.

Published in:

Annals of Medicine, 2001, v. 33, n. 2, p. 142, doi. 10.3109/07853890109002069

By:

Kallioniemi, Olli-P

Publication type:

Article

Genetic changes in familial prostate cancer by comparative genomic hybridization.

Published in:

Prostate, 2001, v. 46, n. 3, p. 233, doi. 10.1002/1097-0045(20010215)46:3<233::AID-PROS1028>3.0.CO;2-W

By:

Rökman, Annika;
Koivisto, Pasi A.;
Matikainen, Mika P.;
Kuukasjärvi, Tuula;
Poutiainen, Marita;
Helin, Heikki J.;
Karhu, Ritva;
Kallioniemi, Olli-P.;
Schleutker, Johanna

Publication type:

Article

Androgen receptor gene amplification: A novel molecular mechanism for endocrine therapy resistance in human prostate cancer.

Published in:

Scandinavian Journal of Clinical & Laboratory Investigation, 1996, v. 56, n. S226, p. 57, doi. 10.1080/00365519609168299

By:

Koivisto, Pasi;
Visakorpi, Tapio;
Kallioniemi, Olli-P.

Publication type:

Article

Evaluating feature extraction in ovarian cancer cell line co-cultures using deep neural networks.

Published in:

Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-07766-w

By:

Sharma, Osheen;
Gudoityte, Greta;
Minozada, Rezan;
Kallioniemi, Olli P.;
Turkki, Riku;
Paavolainen, Lassi;
Seashore-Ludlow, Brinton

Publication type:

Article

A major locus for hereditary prostate cancer in Finland: localization by linkage disequilibrium of a haplotype in the HPCX region.

Published in:

2005

By:

Baffoe-Bonnie, Agnes B.;
Smith, Jeffrey R.;
Stephan, Dietrich A.;
Schleutker, Johanna;
Carpten, John D.;
Kainu, Tommi;
Gillanders, Elizabeth M.;
Matikainen, Mika;
Teslovich, Tanya M.;
Tammela, Teuvo;
Sood, Raman;
Balshem, Andrew M.;
Scarborough, Sheehan D.;
Jianfeng Xu;
Isaacs, William B.;
Trent, Jeffrey M.;
Kallioniemi, Olli-P.;
Bailey-Wilson, Joan E.

Publication type:

Correction Notice

A major locus for hereditary prostate cancer in Finland: localization by linkage disequilibrium of a haplotype in the HPCX region.

Published in:

Human Genetics, 2005, v. 117, n. 4, p. 307, doi. 10.1007/s00439-005-1306-z

By:

Baffoe-Bonnie, Agnes B.;
Smith, Jeffrey R.;
Stephan, Dietrich A.;
Schleutker, Johanna;
Carpten, John D.;
Kainu, Tommi;
Gillanders, Elizabeth M.;
Matikainen, Mika;
Teslovich, Tanya M.;
Tammela, Teuvo;
Sood, Raman;
Balshem, Andrew M.;
Scarborough, Sheehan D.;
Jianfeng Xu;
Isaacs, William B.;
Trent, Jeffrey;
Kallioniemi, Olli-P.;
Bailey-Wilson, Joan

Publication type:

Article

Androgen receptor CAG polymorphism and prostate cancer risk.

Published in:

Human Genetics, 2002, v. 111, n. 2, p. 166, doi. 10.1007/s00439-002-0776-5

By:

Mononen, Nina;
Ikonen, Tarja;
Autio, Ville;
Rökman, Annika;
Matikainen, Mika P.;
Tammela, Teuvo L.;
Kallioniemi, Olli-P.;
Koivisto, Pasi A.;
Schleutker, Johanna

Publication type:

Article

New paraoxonase 1 polymorphism I102V and the risk of prostate cancer in Finnish men.

Published in:

2003

By:

Marchesani, Marja;
Hakkarainen, Anna;
Tuomainen, Tomi-Pekka;
Kaikkonen, Jari;
Pukkala, Eero;
Uimari, Pekka;
Seppälä, Eija;
Matikainen, Mika;
Kallioniemi, Olli-P;
Schleutker, Johanna;
Lehtimäki, Terho;
Salonen, Jukka T

Publication type:

journal article

New Paraoxonase 1 Polymorphism 1102V and the Risk of Prostate Cancer in Finnish Men.

Published in:

JNCI: Journal of the National Cancer Institute, 2003, v. 95, n. 11, p. 812, doi. 10.1093/jnci/95.11.812

By:

Marchesani, Marja;
Hakkarainen, Anna;
Tuomainen, Tomi-Pekka;
Kaikkonen, Jari;
Pukkala, Eero;
Uimari, Pekka;
Seppälä, Eija;
Matikainen, Mika;
Kallioniemi, Olli-P.;
Schleutken, Johanna;
Lehtimäki, Terho;
Salonen, Jukka T.

Publication type:

Article

Hormone therapy failure in human prostate cancer: analysis by complementary DNA and tissue microarrays.

Published in:

1999

By:

Bubendorf, Lukas;
Kolmer, Meelis;
Kononen, Juha;
Koivisto, Pasi;
Mousses, Spyro;
Chen, Yidong;
Mahlamtiki, Eija;
Schraml, Peter;
Moch, Holger;
Willi, Niels;
Elkahloun, Abdel G.;
Pretlow, Thomas G.;
Gasser, Thomas C.;
Mihatsch, Michael J.;
Sauter, Guido;
Kallioniemi, Olli-P.;
Bubendorf, L;
Kolmer, M;
Kononen, J;
Koivisto, P

Publication type:

journal article

Tissue microarray technology for high-throughput molecular profiling of cancer.

Published in:

Human Molecular Genetics, 2001, v. 10, n. 7, p. 657, doi. 10.1093/hmg/10.7.657

By:

Kallioniemi, Olli-P.

Publication type:

Article

Low Proportion of BRCA1 and BRCA2 Mutations in Finnish Breast Cancer Families: Evidence for Additional Susceptibility Genes.

Published in:

Human Molecular Genetics, 1997, v. 6, n. 13, p. 2309, doi. 10.1093/hmg/6.13.2309

By:

Vehmanen, Paula;
Friedman, Lori S.;
Eerola, Hannaleena;
McClure, Melody;
Ward, Brian;
Sarantaus, Laura;
Kainu, Tommi;
Syrjäkoski, Kirsi;
Pyrhönen, Seppo;
Kallioniemi, Olli-P.;
Muhonen, Timo;
Luce, Michael;
Frank, Thomas S.;
Nevanlinna, Heli

Publication type:

Article

Defining the molecular action of HDAC inhibitors and synergism with androgen deprivation in ERG-positive prostate cancer.

Published in:

International Journal of Cancer, 2008, v. 123, n. 12, p. 2774, doi. 10.1002/ijc.23885

By:

Björkman, Mari;
Iljin, Kristiina;
Halonen, Pasi;
Sara, Henri;
Kaivanto, Elisa;
Nees, Matthias;
Kallioniemi, Olli P.

Publication type:

Article

Loss of the tight junction protein claudin-7 correlates with histological grade in both ductal carcinoma in situ and invasive ductal carcinoma of the breast.

Published in:

Oncogene, 2003, v. 22, n. 13, p. 2021, doi. 10.1038/sj.onc.1206199

By:

Kominsky, Scott L;
Argani, Pedram;
Korz, Dorian;
Evron, Ella;
Raman, Venu;
Garrett, Elizabeth;
Rein, Alan;
Sauter, Guido;
Kallioniemi, Olli-P;
Sukumar, Saraswati

Publication type:

Article

Amplification and overexpression of PRUNE in human sarcomas and breast carcinomas–a possible mechanism for altering the nm23-H1 activity.

Published in:

Oncogene, 2001, v. 20, n. 47, p. 6881, doi. 10.1038/sj.onc.1204874

By:

Forus, Anne;
D'Angelo, Anna;
Henriksen, Jørn;
Merla, Giuseppe;
Maelandsmo, Gunhild M;
Flørenes, Vivi Ann;
Olivieri, Stefano;
Bjerkehagen, Bodil;
Meza-Zepeda, Leonardo A.;
Del Vecchio Blanco, Francesca;
Müller, Christoph;
Sanvito, Francesca;
Kononen, Juha;
Nesland, Jahn M.;
Fodstad, Øystein;
Reymond, Alexandre;
Kallioniemi, Olli-P.;
Arrigoni, Gianluigi;
Ballabio, Andrea;
Myklebost, Ola

Publication type:

Article

Failure of hormone therapy in prostate cancer involves systematic restoration of androgen responsive genes and activation of rapamycin sensitive signaling.

Published in:

Oncogene, 2001, v. 20, n. 46, p. 6718, doi. 10.1038/sj.onc.1204889

By:

Mousses, Spyro;
Wagner, Urs;
Chen, Yidong;
Kim, J W;
Bubendorf, Lukas;
Bittner, Michael;
Pretlow, Thomas;
Elkahloun, Abdel G;
Trepel, Jane B;
Kallioniemi, Olli-P

Publication type:

Article

The miR-15a-miR-16-1 locus is homozygously deleted in a subset of prostate cancers.

Published in:

Genes, Chromosomes & Cancer, 2011, v. 50, n. 7, p. 499, doi. 10.1002/gcc.20873

By:

Porkka, Kati P.;
Ogg, Erinn-Lee;
Saramäki, Outi R.;
Vessella, Robert L.;
Pukkila, Heidi;
Lähdesmäki, Harri;
van Weerden, Wytske M.;
Wolf, Maija;
Kallioniemi, Olli P.;
Jenster, Guido;
Visakorpi, Tapio

Publication type:

Article

Generation and analysis of melanoma SAGE libraries: SAGE advice on the melanoma transcriptome.

Published in:

Oncogene, 2004, v. 23, n. 12, p. 2264, doi. 10.1038/sj.onc.1207337

By:

Becker, Dorothea;
Yang, Sherry;
Chen, Yidong;
Bittner, Michael;
Wagner, Urs;
Weeraratna, Ashani T.;
Carr, Kristen M.;
Duray, Paul H.;
Rosenblatt, Kevin P.;
Strausberg, Robert L.;
Riggins, Gregory J.;
Kallioniemi, Olli P.;
Trent, Jeffrey M.;
Morin, Patrice J.;
Meltzer, Paul S.

Publication type:

Article

Comprehensive data-driven analysis of the impact of chemoinformatic structure on the genome-wide biological response profiles of cancer cells to 1159 drugs.

Published in:

BMC Bioinformatics, 2012, v. 13, n. 1, p. 112, doi. 10.1186/1471-2105-13-112

By:

Khan, Suleiman A.;
Faisal, Ali;
Mpindi, John Patrick;
Parkkinen, Juuso A.;
Kalliokoski, Tuomo;
Poso, Antti;
Kallioniemi, Olli P.;
Wennerberg, Krister;
Kaski, Samuel

Publication type:

Article

Androgen regulation of micro-RNAs in prostate cancer.

Published in:

Prostate, 2011, v. 71, n. 6, p. 604, doi. 10.1002/pros.21276

By:

Waltering, Kati K.;
Porkka, Kati P.;
Jalava, Sanni E.;
Urbanucci, Alfonso;
Kohonen, Pekka J.;
Latonen, Leena M.;
Kallioniemi, Olli P.;
Jenster, Guido;
Visakorpi, Tapio

Publication type:

Article

Association of Overexpression of Tumor Suppressor Protien p With Rapid Cell Proliferation and Poor Prognosis in Node-Negative Breast Cancer Patients.

Published in:

JNCI: Journal of the National Cancer Institute, 1992, v. 84, n. 14, p. 1109

By:

Isola, Jorma;
Visakorpi, Tapio;
Holli, Kaija;
Kallioniemi, Olli-P.

Publication type:

Article

Small Subgroup of Aggressive, Highly Proliferative Prostatic Carcinomas Defined by p53 Accumulation.

Published in:

JNCI: Journal of the National Cancer Institute, 1992, v. 84, n. 11, p. 883

By:

Visakorpi, Tapio;
Kallioniemi, Olli-P.;
Heikkinen, Asko;
Koivula, Timo;
Isola, Jorma

Publication type:

Article

Tissue microarrays (TMAs) for high-throughput molecular pathology research.

Published in:

International Journal of Cancer, 2001, v. 94, n. 1, p. 1, doi. 10.1002/ijc.1385

By:

Nocito, Antonio;
Kononen, Juha;
Kallioniemi, Olli-P.;
Sauter, Guido

Publication type:

Article