Works by Kalbfleisch, S.

Results: 41

CENP-A and centromere evolution in equids.

Published in:

Chromosome Research, 2025, v. 33, n. 1, p. 1, doi. 10.1007/s10577-025-09773-3

By:

Cappelletti, Eleonora;
Piras, Francesca M.;
Biundo, Marialaura;
Bellone, Rebecca R.;
Finno, Carrie J.;
Kalbfleisch, Ted S.;
Petersen, Jessica L.;
Nergadze, Solomon G.;
Giulotto, Elena

Publication type:

Article

Initial Operation of the NanoMAX Beamline at MAX IV.

Published in:

2018

By:

Johansson, U.;
Carbone, D.;
Kalbfleisch, S.;
Bjorling, A.;
Rodriguez-Frenandez, A.;
Stankevic, T.;
Liebi, M.;
Bring, B.;
Mikkelsen, A.;
Vogt, U.

Publication type:

Abstract

Initial Operation of the NanoMAX Beamline at MAX IV.

Published in:

2018

By:

Johansson, U.;
Carbone, D.;
Kalbfleisch, S.;
Bjorling, A.;
Rodriguez-Frenandez, A.;
Stankevic, T.;
Liebi, M.;
Bring, B.;
Mikkelsen, A.;
Vogt, U.

Publication type:

Abstract

A survey of polymorphisms detected from sequences of popular beef breeds.

Published in:

Journal of Animal Science, 2015, v. 93, n. 11, p. 5128, doi. 10.2527/jas.2015-9356

By:

Snelling, W. M.;
Bennett, G. L.;
Keele, J. W.;
Kuehn, L. A.;
McDaneld, T. G.;
Smith, T. P.;
Thallman, R. M.;
Kalbfleisch, T. S.;
Pollak, E. J.

Publication type:

Article

Continuous chromosome-scale haplotypes assembled from a single interspecies F1 hybrid of yak and cattle.

Published in:

GigaScience, 2020, v. 9, n. 4, p. N.PAG, doi. 10.1093/gigascience/giaa029

By:

Rice, Edward S;
Koren, Sergey;
Rhie, Arang;
Heaton, Michael P;
Kalbfleisch, Theodore S;
Hardy, Timothy;
Hackett, Peter H;
Bickhart, Derek M;
Rosen, Benjamin D;
Ley, Brian Vander;
Maurer, Nicholas W;
Green, Richard E;
Phillippy, Adam M;
Petersen, Jessica L;
Smith, Timothy P L

Publication type:

Article

Generation of an equine biobank to be used for Functional Annotation of Animal Genomes project.

Published in:

Animal Genetics, 2018, v. 49, n. 6, p. 564, doi. 10.1111/age.12717

By:

Burns, E. N.;
Bordbari, M. H.;
Mienaltowski, M. J.;
Affolter, V. K.;
Barro, M. V.;
Gianino, F.;
Gianino, G.;
Giulotto, E.;
Kalbfleisch, T. S.;
Katzman, S. A.;
Lassaline, M.;
Leeb, T.;
Mack, M.;
Müller, E. J.;
MacLeod, J. N.;
Ming‐Whitfield, B.;
Alanis, C. R.;
Raudsepp, T.;
Scott, E.;
Vig, S.

Publication type:

Article

"Adopt-a-Tissue" Initiative Advances Efforts to Identify Tissue-Specific Histone Marks in the Mare.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.649959

By:

Kingsley, N. B.;
Hamilton, Natasha A.;
Lindgren, Gabriella;
Orlando, Ludovic;
Bailey, Ernie;
Brooks, Samantha;
McCue, Molly;
Kalbfleisch, T. S.;
MacLeod, James N.;
Petersen, Jessica L.;
Finno, Carrie J.;
Bellone, Rebecca R.

Publication type:

Article

Generation of a Biobank From Two Adult Thoroughbred Stallions for the Functional Annotation of Animal Genomes Initiative.

Published in:

Frontiers in Genetics, 2021, v. 11, p. N.PAG, doi. 10.3389/fgene.2021.650305

By:

Donnelly, Callum G.;
Bellone, Rebecca R.;
Hales, Erin N.;
Nguyen, Annee;
Katzman, Scott A.;
Dujovne, Ghislaine A.;
Knickelbein, Kelly E.;
Avila, Felipe;
Kalbfleisch, Ted S.;
Giulotto, Elena;
Kingsley, Nicole B.;
Tanaka, Jocelyn;
Esdaile, Elizabeth;
Peng, Sichong;
Dahlgren, Anna;
Fuller, Anna;
Mienaltowski, Michael J.;
Raudsepp, Terje;
Affolter, Verena K.;
Petersen, Jessica L.

Publication type:

Article

Dynamic alteration in miRNA and mRNA expression profiles at different stages of chronic arsenic exposure-induced carcinogenesis in a human cell culture model of skin cancer.

Published in:

Archives of Toxicology, 2021, v. 95, n. 7, p. 2351, doi. 10.1007/s00204-021-03084-2

By:

Banerjee, Mayukh;
Ferragut Cardoso, Ana;
Al-Eryani, Laila;
Pan, Jianmin;
Kalbfleisch, Theodore S.;
Srivastava, Sudhir;
Rai, Shesh N.;
States, J. Christopher

Publication type:

Article

Article Comparison of Poly-A+ Selection and rRNA Depletion in Detection of lncRNA in Two Equine Tissues Using RNA-seq.

Published in:

Non-Coding RNA, 2020, v. 6, n. 3, p. 1, doi. 10.3390/ncrna6030032

By:

Dahlgren, Anna R.;
Scott, Erica Y.;
Mansour, Tamer;
Hales, Erin N.;
Ross, Pablo J.;
Kalbfleisch, Theodore S.;
MacLeod, James N.;
Petersen, Jessica L.;
Bellone, Rebecca R.;
Finno, Carrie J.

Publication type:

Article

Genetic diversity and connectivity of moose (Alces americanus americanus) in eastern North America.

Published in:

Conservation Genetics, 2023, v. 24, n. 2, p. 235, doi. 10.1007/s10592-022-01496-w

By:

Rosenblatt, Elias;
Gieder, Katherina;
Donovan, Therese;
Murdoch, James;
Smith, Timothy P.L.;
Heaton, Michael P.;
Kalbfleisch, Theodore S.;
Murdoch, Brenda M.;
Bhattarai, Suraj;
Pacht, Emory;
Verbist, Emma;
Basnayake, Veronica;
McKay, Stephanie

Publication type:

Article

Reduced Lentivirus Susceptibility in Sheep with TMEM154 Mutations.

Published in:

PLoS Genetics, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pgen.1002467

By:

Heaton, Michael P.;
Clawson, Michael L.;
Chitko-Mckown, Carol G.;
Leymaster, Kreg A.;
Smith, Timothy P. L.;
Harhay, Gregory P.;
White, Stephen N.;
Herrmann-Hoesing, Lynn M.;
Mousel, Michelle R.;
Lewis, Gregory S.;
Kalbfleisch, Theodore S.;
Keen, James E.;
Laegreid, William W.

Publication type:

Article

Author Correction: Improved reference genome for the domestic horse increases assembly contiguity and composition.

Published in:

2019

By:

Kalbfleisch, Theodore S.;
Rice, Edward S.;
DePriest, Michael S.;
Walenz, Brian P.;
Hestand, Matthew S.;
Vermeesch, Joris R.;
O'Connell, Brendan L.;
Fiddes, Ian T.;
Vershinina, Alisa O.;
Saremi, Nedda F.;
Petersen, Jessica L.;
Finno, Carrie J.;
Bellone, Rebecca R.;
McCue, Molly E.;
Brooks, Samantha A.;
Bailey, Ernest;
Orlando, Ludovic;
Green, Richard E.;
Miller, Donald C.;
Antczak, Douglas F.

Publication type:

Correction Notice

Improved reference genome for the domestic horse increases assembly contiguity and composition.

Published in:

Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0199-z

By:

Kalbfleisch, Theodore S.;
Rice, Edward S.;
DePriest, Michael S.;
Walenz, Brian P.;
Hestand, Matthew S.;
Vermeesch, Joris R.;
O′Connell, Brendan L.;
Fiddes, Ian T.;
Vershinina, Alisa O.;
Saremi, Nedda F.;
Petersen, Jessica L.;
Finno, Carrie J.;
Bellone, Rebecca R.;
McCue, Molly E.;
Brooks, Samantha A.;
Bailey, Ernest;
Orlando, Ludovic;
Green, Richard E.;
Miller, Donald C.;
Antczak, Douglas F.

Publication type:

Article

Improved reference genome for the domestic horse increases assembly contiguity and composition.

Published in:

Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0199-z

By:

Kalbfleisch, Theodore S.;
Rice, Edward S.;
DePriest, Michael S.;
Walenz, Brian P.;
Hestand, Matthew S.;
Vermeesch, Joris R.;
O′Connell, Brendan L.;
Fiddes, Ian T.;
Vershinina, Alisa O.;
Saremi, Nedda F.;
Petersen, Jessica L.;
Finno, Carrie J.;
Bellone, Rebecca R.;
McCue, Molly E.;
Brooks, Samantha A.;
Bailey, Ernest;
Orlando, Ludovic;
Green, Richard E.;
Miller, Donald C.;
Antczak, Douglas F.

Publication type:

Article

Functionally Annotating Regulatory Elements in the Equine Genome Using Histone Mark ChIP-Seq.

Published in:

Genes, 2020, v. 11, n. 1, p. 3, doi. 10.3390/genes11010003

By:

Kingsley, N. B.;
Kern, Colin;
Creppe, Catherine;
Hales, Erin N.;
Zhou, Huaijun;
Kalbfleisch, T. S.;
MacLeod, James N.;
Petersen, Jessica L.;
Finno, Carrie J.;
Bellone, Rebecca R.

Publication type:

Article

Successful ATAC-Seq From Snap-Frozen Equine Tissues.

Published in:

Frontiers in Genetics, 2021, v. 11, p. 1, doi. 10.3389/fgene.2021.641788

By:

Peng, Sichong;
Bellone, Rebecca;
Petersen, Jessica L.;
Kalbfleisch, Theodore S.;
Finno, Carrie J.

Publication type:

Article

Two-dimensional X-ray waveguides: fabrication by wafer-bonding process and characterization.

Published in:

Applied Physics A: Materials Science & Processing, 2008, v. 91, n. 1, p. 7, doi. 10.1007/s00339-007-4374-1

By:

Kohlstedt, A.;
Kalbfleisch, S.;
Salditt, T.;
Reiche, M.;
Gösele, U.;
Lima, E.;
Willmott, P.

Publication type:

Article

Ovine reference materials and assays for prion genetic testing.

Published in:

BMC Veterinary Research, 2010, v. 6, p. 23, doi. 10.1186/1746-6148-6-23

By:

Heaton, Michael P.;
Leymaster, Kreg A.;
Kalbfleisch, Theodore S.;
Freking, Brad A.;
Smith, Timothy P. L.;
Clawson, Michael L.;
Laegreid, William W.

Publication type:

Article

Prevalence of the prion protein gene E211K variant in U.S. cattle.

Published in:

BMC Veterinary Research, 2008, v. 4, p. 1, doi. 10.1186/1746-6148-4-25

By:

Heaton, Michael P.;
Keele, John W.;
Harhay, Gregory P.;
Richt, Jürgen A.;
Koohmaraie, Mohammad;
Wheeler, Tommy L.;
Shackelford, Steven D.;
Casas, Eduardo;
King, D. Andy;
Sonstegard, Tad S.;
Van Tassell, Curtis P.;
Neibergs, Holly L.;
Chase Jr., Chad C.;
Kalbfleisch, Theodore S.;
Smith, Timothy PL;
Clawson, Michael L.;
Laegreid, William W.

Publication type:

Article

Equine arteritis virus long-term persistence is orchestrated by CD8+ T lymphocyte transcription factors, inhibitory receptors, and the CXCL16/CXCR6 axis.

Published in:

PLoS Pathogens, 2019, v. 15, n. 7, p. 1, doi. 10.1371/journal.ppat.1007950

By:

Carossino, Mariano;
Dini, Pouya;
Kalbfleisch, Theodore S.;
Loynachan, Alan T.;
Canisso, Igor F.;
Cook, R. Frank;
Timoney, Peter J.;
Balasuriya, Udeni B. R.

Publication type:

Article

RIsk Stratification prior to lead Extraction and impact on major intraprocedural complications (RISE protocol).

Published in:

Journal of Cardiovascular Electrophysiology, 2019, v. 30, n. 11, p. 2453, doi. 10.1111/jce.14151

By:

Afzal, Muhammad R.;
Daoud, Emile G.;
Matre, Nancy;
Shoben, Abigail;
Burnside, Melissa;
Gilliam, Courtney;
Pinkhas, Daniel;
Okabe, Toshimasa;
Tyler, Jaret;
Houmsse, Mahmoud;
Kalbfleisch, Steven S.;
Crestanello, Juan A.;
Turner, Katja;
Weiss, Raul;
Hummel, John D.;
Love, Charles J.;
Augostini, Ralph S.

Publication type:

Article

Using whole genome sequence to compare variant callers and breed differences of US sheep.

Published in:

Frontiers in Genetics, 2023, v. 13, p. 1, doi. 10.3389/fgene.2022.1060882

By:

Stegemiller, Morgan R.;
Redden, Reid R.;
Notter, David R.;
Taylor, Todd;
Taylor, J. Bret;
Cockett, Noelle E.;
Heaton, Michael P.;
Kalbfleisch, Theodore S.;
Murdoch, Brenda M.

Publication type:

Article

Delineating the Effects of Passaging and Exposure in a Longitudinal Study of Arsenic-Induced Squamous Cell Carcinoma in a HaCaT Cell Line Model.

Published in:

Toxicological Sciences, 2022, v. 185, n. 2, p. 184, doi. 10.1093/toxsci/kfab129

By:

Banerjee, Mayukh;
Al-Eryani, Laila;
Srivastava, Sudhir;
Rai, Shesh N;
Pan, Jianmin;
Kalbfleisch, Theodore S;
States, J Christopher

Publication type:

Article

Comprehensive characterization of an individual's LINE-1 insertion profile using next generation sequencing data.

Published in:

2012

By:

Kemper, Alexander;
Hindi, Musa;
Ramos, Kenneth S.;
Kalbfleisch, Theodore S.

Publication type:

Abstract

Erratum to: A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus.

Published in:

Journal of Heredity, 2021, v. 112, n. 6, p. 565, doi. 10.1093/jhered/esab039

By:

Heaton, Michael P;
Smith, Timothy P L;
Bickhart, Derek M;
Ley, Brian L Vander;
Kuehn, Larry A;
Oppenheimer, Jonas;
Shafer, Wade R;
Schuetze, Fred T;
Stroud, Brad;
McClure, Jennifer C;
Barfield, Jennifer P;
Blackburn, Harvey D;
Kalbfleisch, Theodore S;
Davenport, Kimberly M;
Kuhn, Kristen L;
Green, Richard E;
Shapiro, Beth;
Rosen, Benjamin D

Publication type:

Article

A Reference Genome Assembly of American Bison, Bison bison bison.

Published in:

Journal of Heredity, 2021, v. 112, n. 2, p. 174, doi. 10.1093/jhered/esab003

By:

Oppenheimer, Jonas;
Rosen, Benjamin D;
Heaton, Michael P;
Ley, Brian L Vander;
Shafer, Wade R;
Schuetze, Fred T;
Stroud, Brad;
Kuehn, Larry A;
McClure, Jennifer C;
Barfield, Jennifer P;
Blackburn, Harvey D;
Kalbfleisch, Theodore S;
Bickhart, Derek M;
Davenport, Kimberly M;
Kuhn, Kristen L;
Green, Richard E;
Shapiro, Beth;
Smith, Timothy P L

Publication type:

Article

A Reference Genome Assembly of Simmental Cattle, Bos taurus taurus.

Published in:

Journal of Heredity, 2021, v. 112, n. 2, p. 184, doi. 10.1093/jhered/esab002

By:

Heaton, Michael P;
Smith, Timothy P L;
Bickhart, Derek M;
Ley, Brian L Vander;
Kuehn, Larry A;
Oppenheimer, Jonas;
Shafer, Wade R;
Schuetze, Fred T;
Stroud, Brad;
McClure, Jennifer C;
Barfield, Jennifer P;
Blackburn, Harvey D;
Kalbfleisch, Theodore S;
Davenport, Kimberly M;
Kuhn, Kristen L;
Green, Richard E;
Shapiro, Beth;
Rosen, Benjamin D

Publication type:

Article

MC1R and KIT Haplotypes Associate With Pigmentation Phenotypes of North American Yak (Bos grunniens).

Published in:

Journal of Heredity, 2020, v. 111, n. 2, p. 182, doi. 10.1093/jhered/esz070

By:

Petersen, Jessica L;
Kalbfleisch, Theodore S;
Parris, Morgan;
Tietze, Shauna M;
Cruickshank, Jenifer

Publication type:

Article

Trio-binning of a hinny refines the comparative organization of the horse and donkey X chromosomes and reveals novel species-specific features.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-47583-x

By:

Jevit, Matthew J.;
Castaneda, Caitlin;
Paria, Nandina;
Das, Pranab J.;
Miller, Donald;
Antczak, Douglas F.;
Kalbfleisch, Theodore S.;
Davis, Brian W.;
Raudsepp, Terje

Publication type:

Article

Pushing the limits: an instrument for hard X-ray imaging below 20 nm.

Published in:

Journal of Synchrotron Radiation, 2015, v. 22, n. 2, p. 336, doi. 10.1107/S1600577514025715

By:

Nazaretski, E.;
Lauer, K.;
Yan, H.;
Bouet, N.;
Zhou, J.;
Conley, R.;
Huang, X.;
Xu, W.;
Lu, M.;
Gofron, K.;
Kalbfleisch, S.;
Wagner, U.;
Rau, C.;
Chu, Y. S.

Publication type:

Article

Sub-10 nm beam confinement by X-ray waveguides: design, fabrication and characterization of optical properties.

Published in:

Journal of Synchrotron Radiation, 2012, v. 19, n. 2, p. 227, doi. 10.1107/S0909049511051983

By:

Krüger, S. P.;
Neubauer, H.;
Bartels, M.;
Kalbfleisch, S.;
Giewekemeyer, K.;
Wilbrandt, P. J.;
Sprung, M.;
Salditt, T.

Publication type:

Article

Inflamed synovial fluid induces a homeostatic response in bone marrow mononuclear cells in vitro: Implications for joint therapy.

Published in:

FASEB Journal, 2020, v. 34, n. 3, p. 4430, doi. 10.1096/fj.201902698R

By:

Menarim, Bruno C.;
Gillis, Kiersten H.;
Oliver, Andrea;
Mason, Caitlin;
Werre, Stephen R.;
Luo, Xin;
Byron, Christopher R.;
Kalbfleisch, Theodore S.;
MacLeod, James N.;
Dahlgren, Linda A.

Publication type:

Article

Annotation of the Protein Coding Regions of the Equine Genome.

Published in:

PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0124375

By:

Hestand, Matthew S.;
Kalbfleisch, Theodore S.;
Coleman, Stephen J.;
Zeng, Zheng;
Liu, Jinze;
Orlando, Ludovic;
MacLeod, James N.

Publication type:

Article

SNPs for Parentage Testing and Traceability in Globally Diverse Breeds of Sheep.

Published in:

PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0094851

By:

Heaton, Michael P.;
Leymaster, Kreg A.;
Kalbfleisch, Theodore S.;
Kijas, James W.;
Clarke, Shannon M.;
McEwan, John;
Maddox, Jillian F.;
Basnayake, Veronica;
Petrik, Dustin T.;
Simpson, Barry;
Smith, Timothy P. L.;
Chitko-McKown, Carol G.

Publication type:

Article

Genetic Testing for TMEM154 Mutations Associated with Lentivirus Susceptibility in Sheep.

Published in:

PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0055490

By:

Heaton, Michael P.;
Kalbfleisch, Theodore S.;
Petrik, Dustin T.;
Simpson, Barry;
Kijas, James W.;
Clawson, Michael L.;
Chitko-McKown, Carol G.;
Harhay, Gregory P.;
Leymaster, Kreg A.

Publication type:

Article

Genome Assembly Has a Major Impact on Gene Content: A Comparison of Annotation in Two Bos Taurus Assemblies.

Published in:

PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0021400

By:

Florea, Liliana;
Souvorov, Alexander;
Kalbfleisch, Theodore S.;
Salzberg, Steven L.

Publication type:

Article

The localization of centromere protein A is conserved among tissues.

Published in:

Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-05335-7

By:

Cappelletti, Eleonora;
Piras, Francesca M.;
Sola, Lorenzo;
Santagostino, Marco;
Petersen, Jessica L.;
Bellone, Rebecca R.;
Finno, Carrie J.;
Peng, Sichong;
Kalbfleisch, Ted S.;
Bailey, Ernest;
Nergadze, Solomon G.;
Giulotto, Elena

Publication type:

Article

Genomic signatures of Mannheimia haemolytica that associate with the lungs of cattle with respiratory disease, an integrative conjugative element, and antibiotic resistance genes.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3316-8

By:

Clawson, Michael L.;
Murray, Robert W.;
Sweeney, Michael T.;
Apley, Michael D.;
DeDonder, Keith D.;
Capik, Sarah F.;
Larson, Robert L.;
Lubbers, Brian V.;
White, Brad J.;
Kalbfleisch, Theodore S.;
Schuller, Gennie;
Dickey, Aaron M.;
Harhay, Gregory P.;
Heaton, Michael P.;
Chitko-McKown, Carol G.;
Brichta-Harhay, Dayna M.;
Bono, James L.;
Smith, Timothy P. L.

Publication type:

Article

Transcriptional and Histochemical Signatures of Bone Marrow Mononuclear Cell-Mediated Resolution of Synovitis.

Published in:

Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.734322

By:

Menarim, Bruno C.;
El-Sheikh Ali, Hossam;
Loux, Shavahn C.;
Scoggin, Kirsten E.;
Kalbfleisch, Theodore S.;
MacLeod, James N.;
Dahlgren, Linda A.

Publication type:

Article

Transcriptomic analysis of equine chorioallantois reveals immune networks and molecular mechanisms involved in nocardioform placentitis.

Published in:

Veterinary Research, 2021, v. 52, n. 1, p. 1, doi. 10.1186/s13567-021-00972-4

By:

El-Sheikh Ali, Hossam;
Loux, Shavahn C.;
Kennedy, Laura;
Scoggin, Kirsten E.;
Dini, Pouya;
Fedorka, Carleigh E.;
Kalbfleisch, Theodore S.;
Esteller-Vico, Alejandro;
Horohov, David W.;
Erol, Erdal;
Carter, Craig N.;
Smith, Jackie L.;
Ball, Barry A.

Publication type:

Article