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A new scheme to discover functional associations and regulatory networks of E3 ubiquitin ligases.
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- BMC Systems Biology, 2016, v. 10, p. 27, doi. 10.1186/s12918-015-0244-1
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- Article
Poly-γ-glutamic Acid Synthesis, Gene Regulation, Phylogenetic Relationships, and Role in Fermentation.
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- International Journal of Molecular Sciences, 2017, v. 18, n. 12, p. 2644, doi. 10.3390/ijms18122644
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- Article
Investigation and identification of protein carbonylation sites based on position-specific amino acid composition and physicochemical features.
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- BMC Bioinformatics, 2017, v. 18, p. 125, doi. 10.1186/s12859-017-1472-8
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- Article
dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications.
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- Nucleic Acids Research, 2019, v. 47, n. D1, p. D298, doi. 10.1093/nar/gky1074
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- Article
dbAMP: an integrated resource for exploring antimicrobial peptides with functional activities and physicochemical properties on transcriptome and proteome data.
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- Nucleic Acids Research, 2019, v. 47, n. D1, p. D285, doi. 10.1093/nar/gky1030
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- Article
dbPTM 2016: 10-year anniversary of a resource for post-translational modification of proteins.
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- Nucleic Acids Research, 2016, v. 44, p. D435, doi. 10.1093/nar/gkv1240
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- Article
dbSNO 2.0: a resource for exploring structural environment, functional and disease association and regulatory network of protein S-nitrosylation.
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- Nucleic Acids Research, 2015, v. 43, n. D1, p. D503, doi. 10.1093/nar/gku1176
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- Article
topPTM: a new module of dbPTM for identifying functional post-translational modifications in transmembrane proteins.
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- Nucleic Acids Research, 2014, v. 42, n. D1, p. D537, doi. 10.1093/nar/gkt1221
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- Article
dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications.
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- Nucleic Acids Research, 2013, v. 41, p. D295, doi. 10.1093/nar/gks1229
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- Article
Efficient methods for multiple types of precise gene‐editing in Chlamydomonas.
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- Plant Journal, 2023, v. 115, n. 3, p. 846, doi. 10.1111/tpj.16265
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- Article
GSHSite: Exploiting an Iteratively Statistical Method to Identify S-Glutathionylation Sites with Substrate Specificity.
- Published in:
- PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0118752
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- Article
Identifying Protein Phosphorylation Sites with Kinase Substrate Specificity on Human Viruses.
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- PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0040694
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- Article
UbiNet 2.0: a verified, classified, annotated and updated database of E3 ubiquitin ligase–substrate interactions.
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- Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab010
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- Article
UbiNet: an online resource for exploring the functional associations and regulatory networks of protein ubiquitylation.
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- Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw054
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- Article
RegPhos 2.0: an updated resource to explore protein kinase–substrate phosphorylation networks in mammals.
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- Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau034
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- Article
Investigation and identification of functional post-translational modification sites associated with drug binding and protein-protein interactions.
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- BMC Systems Biology, 2017, v. 11, p. 69, doi. 10.1186/s12918-017-0506-1
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- Article
MDD-carb: a combinatorial model for the identification of protein carbonylation sites with substrate motifs.
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- BMC Systems Biology, 2017, v. 11, p. 127, doi. 10.1186/s12918-017-0511-4
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- Article
Identification of natural antimicrobial peptides from bacteria through metagenomic and metatranscriptomic analysis of high-throughput transcriptome data of Taiwanese oolong teas.
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- BMC Systems Biology, 2017, v. 11, p. 29, doi. 10.1186/s12918-017-0503-4
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- Article
Anticancer peptide Q7 suppresses the growth and migration of human endometrial cancer by inhibiting DHCR24 expression and modulating the AKT-mediated pathway.
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- International Journal of Medical Sciences, 2022, v. 19, n. 14, p. 2008, doi. 10.7150/ijms.78349
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- Article
Gene expression profiling identifies candidate biomarkers for active and latent tuberculosis.
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- BMC Bioinformatics, 2016, v. 17, p. 27, doi. 10.1186/s12859-015-0848-x
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- Article
A two-layered machine learning method to identify protein O-GlcNAcylation sites with OGlcNAc transferase substrate motifs.
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- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S18-S10
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- Article
Characterization and identification of ubiquitin conjugation sites with E3 ligase recognition specificities.
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- BMC Bioinformatics, 2015, v. 16, p. S1, doi. 10.1186/1471-2105-16-S1-S1
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- Publication type:
- Article
ViralmiR: a support-vector-machine-based method for predicting viral microRNA precursors.
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- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S1-S9
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- Article
An interpretable rule-based diagnostic classification of diabetic nephropathy among type 2 diabetes patients.
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- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S1-S5
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- Article
ViralPhos: incorporating a recursively statistical method to predict phosphorylation sites on virus proteins.
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- BMC Bioinformatics, 2013, v. 14, n. Suppl 16, p. 1, doi. 10.1186/1471-2105-14-S16-S10
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- Article
Investigation and identification of protein γ-glutamyl carboxylation sites.
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- BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S10
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- Article
Characterization and Identification of Lysine Succinylation Sites based on Deep Learning Method.
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- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-52552-4
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- Article
Increase Trichomonas vaginalis detection based on urine routine analysis through a machine learning approach.
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- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-47361-8
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- Article
Rapid classification of group B Streptococcus serotypes based on matrix-assisted laser desorption ionization-time of flight mass spectrometry and machine learning techniques.
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- BMC Bioinformatics, 2019, v. 20, p. 1, doi. 10.1186/s12859-019-3282-7
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- Article
iDVEIP: A computer-aided approach for the prediction of viral entry inhibitory peptides.
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- Proteomics, 2024, v. 24, n. 9, p. 1, doi. 10.1002/pmic.202300257
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- Article
iDVIP: identification and characterization of viral integrase inhibitory peptides.
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- Briefings in Bioinformatics, 2022, v. 23, n. 6, p. 1, doi. 10.1093/bib/bbac406
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- Article
Genome-wide discovery of viral microRNAs based on phylogenetic analysis and structural evolution of various human papillomavirus subtypes.
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- Briefings in Bioinformatics, 2018, v. 19, n. 6, p. 1102, doi. 10.1093/bib/bbx046
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- Article
Incorporating significant amino acid pairs and protein domains to predict RNA splicing-related proteins with functional roles.
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- Journal of Computer-Aided Molecular Design, 2014, v. 28, n. 1, p. 49, doi. 10.1007/s10822-014-9706-6
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- Article
Metagenomic analysis of the gut microbiome composition associated with vitamin D supplementation in Taiwanese infants.
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- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-82584-8
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- Article
miRTarBase 2020: updates to the experimentally validated microRNA–target interaction database.
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- Nucleic Acids Research, 2020, v. 48, n. D1, p. D148, doi. 10.1093/nar/gkz896
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- Article
A flexible liposomal polymer complex as a platform of specific and regulable immune regulation for individual cancer immunotherapy.
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- Journal of Experimental & Clinical Cancer Research (17569966), 2023, v. 42, n. 1, p. 1, doi. 10.1186/s13046-023-02601-8
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- Article
Characterization and identification of lysine glutarylation based on intrinsic interdependence between positions in the substrate sites.
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- BMC Bioinformatics, 2019, v. 19, n. 13, p. 13, doi. 10.1186/s12859-018-2394-9
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- Article
Structural and functional characterization of β<sub>2</sub>‐glycoprotein I domain 1 in anti‐melanoma cell migration.
- Published in:
- Cancer Science, 2019, v. 110, n. 6, p. 1974, doi. 10.1111/cas.14030
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- Article
Systematic Expression Profiling Analysis Identifies Specific MicroRNA-Gene Interactions that May Differentiate between Active and Latent Tuberculosis Infection.
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- BioMed Research International, 2014, v. 2014, p. 1, doi. 10.1155/2014/895179
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- Publication type:
- Article
A new scheme for strain typing of methicillin-resistant Staphylococcus aureus on the basis of matrix-assisted laser desorption ionization time-of-flight mass spectrometry by using machine learning approach.
- Published in:
- PLoS ONE, 2018, v. 13, n. 3, p. 1, doi. 10.1371/journal.pone.0194289
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- Publication type:
- Article
iDPGK: characterization and identification of lysine phosphoglycerylation sites based on sequence-based features.
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- BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-03916-5
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- Article