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DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation.
- Published in:
- eLife, 2015, p. 1, doi. 10.7554/eLife.05255
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- Publication type:
- Article
Accurate detection of differential RNA processing.
- Published in:
- Nucleic Acids Research, 2013, v. 41, n. 10, p. 5189, doi. 10.1093/nar/gkt211
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- Publication type:
- Article
Systematic evaluation of spliced alignment programs for RNA-seq data.
- Published in:
- Nature Methods, 2013, v. 10, n. 12, p. 1185, doi. 10.1038/nmeth.2722
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- Publication type:
- Article
Label-guided seed-chain-extend alignment on annotated De Bruijn graphs.
- Published in:
- Bioinformatics, 2024, v. 40, p. i337, doi. 10.1093/bioinformatics/btae226
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- Publication type:
- Article
Probabilistic pathway-based multimodal factor analysis.
- Published in:
- Bioinformatics, 2024, v. 40, p. i189, doi. 10.1093/bioinformatics/btae216
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- Publication type:
- Article
SimReadUntil for benchmarking selective sequencing algorithms on ONT devices.
- Published in:
- Bioinformatics, 2024, v. 40, n. 5, p. 1, doi. 10.1093/bioinformatics/btae199
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- Publication type:
- Article
SECEDO: SNV-based subclone detection using ultra-low coverage single-cell DNA sequencing.
- Published in:
- Bioinformatics, 2022, v. 38, n. 18, p. 4293, doi. 10.1093/bioinformatics/btac510
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- Publication type:
- Article
Topology-based sparsification of graph annotations.
- Published in:
- Bioinformatics, 2021, v. 37, p. i169, doi. 10.1093/bioinformatics/btab330
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- Publication type:
- Article
Excap: Maximization of Haplotypic Diversity of Linked Markers.
- Published in:
- PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0079012
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- Publication type:
- Article
Oqtans: a Galaxy-integrated workflow for quantitative transcriptome analysis from NGS Data.
- Published in:
- 2011
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- Publication type:
- Abstract
Multiple reference genomes and transcriptomes for Arabidopsis thaliana.
- Published in:
- Nature, 2011, v. 477, n. 7365, p. 419, doi. 10.1038/nature10414
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- Publication type:
- Article
Alternative Splicing Substantially Diversifies the Transcriptome during Early Photomorphogenesis and Correlates with the Energy Availability in Arabidopsis.
- Published in:
- Plant Cell, 2016, v. 28, n. 11, p. 2715, doi. 10.1105/tpc.16.00508
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- Publication type:
- Article
Nonsense-Mediated Decay of Alternative Precursor mRNA Splicing Variants Is a Major Determinant of the Arabidopsis Steady State Transcriptome.
- Published in:
- Plant Cell, 2013, v. 25, n. 10, p. 3726, doi. 10.1105/tpc.113.115485
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- Publication type:
- Article
Polypyrimidine Tract Binding Protein Homologs from Arabidopsis Are Key Regulators of Alternative Splicing with Implications in Fundamental Developmental Processes.
- Published in:
- Plant Cell, 2012, v. 24, n. 11, p. 4360, doi. 10.1105/tpc.112.103622
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- Publication type:
- Article
Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits.
- Published in:
- Genetics, 2017, v. 205, n. 4, p. 1425, doi. 10.1534/genetics.116.192823
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- Publication type:
- Article
Dynamic compression schemes for graph coloring.
- Published in:
- Bioinformatics, 2019, v. 35, n. 3, p. 407, doi. 10.1093/bioinformatics/bty632
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- Publication type:
- Article
SplAdder. identification, quantification and testing of alternative splicing events from RNA-Seq data.
- Published in:
- Bioinformatics, 2016, v. 32, n. 12, p. 1840, doi. 10.1093/bioinformatics/btw076
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- Publication type:
- Article
MMR: a tool for read multi-mapper resolution.
- Published in:
- Bioinformatics, 2016, v. 32, n. 5, p. 770, doi. 10.1093/bioinformatics/btv624
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- Publication type:
- Article
Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis.
- Published in:
- Bioinformatics, 2014, v. 30, n. 9, p. 1300, doi. 10.1093/bioinformatics/btt731
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- Publication type:
- Article
MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples.
- Published in:
- Bioinformatics, 2013, v. 29, n. 20, p. 2529, doi. 10.1093/bioinformatics/btt442
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- Publication type:
- Article