Works by KIKUCHI, TAKESHI

Results: 96

Conserved structural topologies in RNase A-like and trypsin-like serine proteases: a sequence-based folding analysis.

Published in:

BMC Molecular & Cell Biology, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12860-025-00542-y

By:

Kabir, K. M. Ahsanul;
Takahashi, Takuya;
Kikuchi, Takeshi

Publication type:

Article

Long-term survival following concurrent chemoradiotherapy in patients with non-small-cell lung cancer with concomitant brain metastases only.

Published in:

International Journal of Clinical Oncology, 2005, v. 10, n. 1, p. 63, doi. 10.1007/s10147-004-0436-y

By:

Harita, Shingo;
Mizuta, Akifumi;
Kuyama, Shoichi;
Kikuchi, Takeshi

Publication type:

Article

Analysis of 3D structural differences in the IgG-binding domains based on the interresidue average-distance statistics.

Published in:

Amino Acids, 2008, v. 35, n. 3, p. 541, doi. 10.1007/s00726-008-0082-1

By:

Takeshi Kikuchi

Publication type:

Article

Hepatocellular carcinoma with obstructive jaundice successfully treated with a self-expandable metallic stent.

Published in:

1998

By:

Okazaki, Morihiro;
Mizuta, Akifumi;
Hamada, Noboru;
Kawamura, Nozomu;
Nakao, Kazushi;
Kikuchi, Takeshi;
Osada, Takahisa;
Okazaki, M;
Mizuta, A;
Hamada, N;
Kawamura, N;
Nakao, K;
Kikuchi, T;
Osada, T

Publication type:

journal article

Study of protein fluctuation with an effective inter-Cα atomic potential derived from average distances between amino acids in proteins.

Published in:

Journal of Computational Chemistry, 1999, v. 20, n. 7, p. 713, doi. 10.1002/(SICI)1096-987X(199905)20:7<713::AID-JCC6>3.0.CO;2-S

By:

Kikuchi, Takeshi

Publication type:

Article

Inter-Cα atomic potentials derived from the statistics of average interresidue distances in proteins: Application to bovine pancreatic trypsin inhibitor.

Published in:

Journal of Computational Chemistry, 1996, v. 17, n. 2, p. 226, doi. 10.1002/(SICI)1096-987X(19960130)17:2<226::AID-JCC9>3.0.CO;2-Y

By:

Kikuchi, Takeshi

Publication type:

Article

Spatial geometric arrangements of disulfide-crosslinked loops in nonplanar proteins.

Published in:

Journal of Computational Chemistry, 1989, v. 10, n. 3, p. 287, doi. 10.1002/jcc.540100302

By:

Kikuchi, Takeshi;
Némethy, George;
Scheraga, Harold A.

Publication type:

Article

Spatial geometric arrangements of disulfide-crosslinked loops in proteins.

Published in:

Journal of Computational Chemistry, 1986, v. 7, n. 1, p. 67, doi. 10.1002/jcc.540070109

By:

Kikuchi, Takeshi;
Némethy, George;
Scheraga, Harold A.

Publication type:

Article

Computational Structure Models of Apo and Diferric Transferrin–Transferrin Receptor Complexes.

Published in:

Protein Journal, 2009, v. 28, n. 9/10, p. 407

By:

Takaki Yamamura;
Takeshi Kikuchi;
Hirofumi Yajima

Publication type:

Article

IL-15 and RANKL Play a Synergistically Important Role in Osteoclastogenesis.

Published in:

Journal of Cellular Biochemistry, 2017, v. 118, n. 4, p. 739, doi. 10.1002/jcb.25726

By:

Okabe, Iichiro;
Kikuchi, Takeshi;
Mogi, Makio;
Takeda, Hiroaki;
Aino, Makoto;
Kamiya, Yosuke;
Fujimura, Takeki;
Goto, Hisashi;
Okada, Kosuke;
Hasegawa, Yoshiaki;
Noguchi, Toshihide;
Mitani, Akio

Publication type:

Article

Preliminary evaluation of soluble IL-2 receptor and type III procollagen N-terminal aminopeptide in pleural fluid for differentiating tuberculous, carcinomatous and parapneumonic pleural effusions.

Published in:

Respirology, 2002, v. 7, n. 4, p. 311, doi. 10.1046/j.1440-1843.2002.01976.x

By:

HARITA, SHINGO;
NOGAMI, NAOYUKI;
KIKUCHI, TAKESHI;
KIBATA, MASAYOSHI

Publication type:

Article

Viability and developmental potential of porcine blastocysts preserved for short term in a chemically defined medium at ambient temperature.

Published in:

Reproduction in Domestic Animals, 2022, v. 57, n. 5, p. 556, doi. 10.1111/rda.14095

By:

Lin, Qingyi;
Le, Quynh Anh;
Takebayashi, Koki;
Hirata, Maki;
Tanihara, Fuminori;
Thongkittidilok, Chommanart;
Sawamoto, Osamu;
Kikuchi, Takeshi;
Otoi, Takeshige

Publication type:

Article

Impact of Normothermic Preservation with Extracellular Type Solution Containing Trehalose on Rat Kidney Grafting from a Cardiac Death Donor.

Published in:

PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0033157

By:

Iwai, Satomi;
Kikuchi, Takeshi;
Kasahara, Naoya;
Teratani, Takumi;
Yokoo, Takashi;
Sakonju, Iwao;
Okano, Shouzou;
Kobayashi, Eiji

Publication type:

Article

Solid Solubility of GeO2 in SnO2.

Published in:

Journal of the American Ceramic Society, 1983, v. 66, n. 7, p. c104, doi. 10.1111/j.1151-2916.1983.tb10598.x

By:

Watanabe, Akiteru;
Kikuchi, Takeshi;
Tsutsumi, Masayuki;
Takenouchi, Satoshi;
Uchida, Kenji

Publication type:

Article

Subsolidus Phase Equilibria in the System Na2O-Bi2O3-TiO2 at 1000°C.

Published in:

Journal of the American Ceramic Society, 1978, v. 61, n. 1/2, p. 5, doi. 10.1111/j.1151-2916.1978.tb09217.x

By:

UCHIDA, KENJI;
KIKUCHI, TAKESHI

Publication type:

Article

Instruction of naive CD4+ T-cell fate to T-bet expression and T helper 1 development: roles of T-cell receptor-mediated signals.

Published in:

Immunology, 2007, v. 122, n. 2, p. 210, doi. 10.1111/j.1365-2567.2007.02630.x

By:

Ariga, Haruyuki;
Shimohakamada, Yoko;
Nakada, Makiyo;
Tokunaga, Takeshi;
Kikuchi, Takeshi;
Kariyone, Ai;
Tamura, Toshiki;
Takatsu, Kiyoshi

Publication type:

Article

Augmented induction of CD8+ cytotoxic T-cell response and antitumour resistance by T helper type 1-inducing peptide.

Published in:

Immunology, 2006, v. 117, n. 1, p. 47, doi. 10.1111/j.1365-2567.2005.02262.x

By:

Kikuchi, Takeshi;
Uehara, Shuichiro;
Ariga, Haruyuki;
Tokunaga, Takeshi;
Kariyone, Ai;
Tamura, Toshiki;
Takatsu, Kiyoshi

Publication type:

Article

Impact of cold preservation on leukocyte adhesion to the transplanted rat lung.

Published in:

Microsurgery, 2007, v. 27, n. 4, p. 228, doi. 10.1002/micr.20341

By:

Enomoto, Aki;
Kikuchi, Takeshi;
Seo, Norimasa;
Matsuno, Kenjiro;
Kobayashi, Eiji

Publication type:

Article

Local skin flap reconstruction for abdominal wound dehiscence after abdominal surgery with a stoma: Report of two cases.

Published in:

Surgery Today, 2011, v. 41, n. 9, p. 1252, doi. 10.1007/s00595-010-4436-4

By:

Kakisaka, Tatsuhiko;
Yoneyama, Shigehito;
Katayama, Tomonari;
Kikuchi, Takeshi;
Uemura, Kazuhito;
Ito, Yoshio;
Une, Yoshie

Publication type:

Article

Short-term preservation of porcine zygotes at ambient temperature using a chemically defined medium.

Published in:

Animal Science Journal, 2022, v. 93, n. 1, p. 1, doi. 10.1111/asj.13711

By:

Qingyi Lin;
Quynh Anh Le;
Takebayashi, Koki;
Hirata, Maki;
Tanihara, Fuminori;
Sawamoto, Osamu;
Kikuchi, Takeshi;
Otoi, Takeshige

Publication type:

Article

Short‐term preservation of porcine zygotes at ambient temperature using a chemically defined medium.

Published in:

Animal Science Journal, 2022, v. 93, n. 1, p. 1, doi. 10.1111/asj.13711

By:

Lin, Qingyi;
Le, Quynh Anh;
Takebayashi, Koki;
Hirata, Maki;
Tanihara, Fuminori;
Sawamoto, Osamu;
Kikuchi, Takeshi;
Otoi, Takeshige

Publication type:

Article

Development and characterization of islet‐derived mesenchymal stem cells from clinical grade neonatal porcine cryopreserved islets.

Published in:

Xenotransplantation, 2024, v. 31, n. 1, p. 1, doi. 10.1111/xen.12831

By:

Kikuchi, Takeshi;
Nishimura, Masuhiro;
Komori, Natsuki;
Iizuka, Naho;
Otoi, Takeshige;
Matsumoto, Shinichi

Publication type:

Article

Development and characterization of Gal KO porcine bone marrow‐derived mesenchymal stem cells.

Published in:

Xenotransplantation, 2021, v. 28, n. 6, p. 1, doi. 10.1111/xen.12717

By:

Kikuchi, Takeshi;
Nishimura, Masuhiro;
Hirata, Maki;
Tanihara, Fuminori;
Komori, Natsuki;
Tanaka, Makoto;
Sawamoto, Osamu;
Otoi, Takeshige;
Matsumoto, Shinichi

Publication type:

Article

Differential mode of cholesterol inclusion with 2-hydroxypropyl-cyclodextrins increases safety margin in treatment of Niemann-Pick disease type C.

Published in:

2021

By:

Yamada, Yusei;
Ishitsuka, Yoichi;
Kondo, Yuki;
Nakahara, Shuichi;
Nishiyama, Asami;
Takeo, Toru;
Nakagata, Naomi;
Motoyama, Keiichi;
Higashi, Taishi;
Arima, Hidetoshi;
Kamei, Shunsuke;
Shuto, Tsuyoshi;
Kai, Hirofumi;
Hayashino, Yuji;
Sugita, Masatake;
Kikuchi, Takeshi;
Hirata, Fumio;
Miwa, Toru;
Takeda, Hiroki;
Orita, Yorihisa

Publication type:

journal article

Suppression of subgingival bacteria by antimicrobial photodynamic therapy using transgingival irradiation: A randomized clinical trial.

Published in:

Journal of Periodontology, 2024, v. 95, n. 8, p. 718, doi. 10.1002/JPER.23-0328

By:

Hayashi, Jun‐ichiro;
Ono, Kohta;
Iwamura, Yuki;
Sasaki, Yasuyuki;
Ohno, Tasuku;
Goto, Ryoma;
Nishida, Eisaku;
Yamamoto, Genta;
Kikuchi, Takeshi;
Higuchi, Naoya;
Mitani, Akio;
Fukuda, Mitsuo

Publication type:

Article

Altered Gene Expression in Gingival Tissues and Enhanced Bone Loss in Rats With Diabetes With Experimental Periodontitis.

Published in:

Journal of Periodontology, 2014, v. 85, n. 3, p. 455, doi. 10.1902/jop.2013.120705

By:

Soboku, Kyoko;
Kikuchi, Takeshi;
Fujita, Sachiko;
Takeda, Hiroaki;
Naruse, Keiko;
Matsubara, Tatsuaki;
Noguchi, Toshihide

Publication type:

Article

Azithromycin May Inhibit Interleukin-8 Through Suppression of Rac1 and a Nuclear Factor-Kappa B Pathway in KB Cells Stimulated With Lipopolysaccharide.

Published in:

Journal of Periodontology, 2011, v. 82, n. 11, p. 1623, doi. 10.1902/jop.2011.100721

By:

Matsumura, Yusuke;
Mitani, Akio;
Suga, Takayuki;
Kamiya, Yosuke;
Kikuchi, Takeshi;
Tanaka, Shigehisa;
Aino, Makoto;
Noguchi, Toshihide

Publication type:

Article

In silico study on the substrate binding manner in human myo-inositol monophosphatase 2.

Published in:

Journal of Molecular Modeling, 2011, v. 17, n. 10, p. 2559, doi. 10.1007/s00894-010-0937-8

By:

Fujita, Seisuke;
Ohnishi, Tetsuo;
Okuda, Shujiro;
Kobayashi, Ryo;
Fukuno, Satoshi;
Furuta, Daisuke;
Kikuchi, Takeshi;
Yoshikawa, Takeo;
Fujita, Norihisa

Publication type:

Article

Assessment of oral malodor and tonsillar microbiota after gargling with benzethonium chloride.

Published in:

2016

By:

Yuki Iwamura;
Jun-ichiro Hayashi;
Takashi Sato;
Sota Sato;
Taeko Murakami;
Takeki Fujimura;
Yasuyuki Sasaki;
Kosuke Okada;
Eri Takahashi;
Takeshi Kikuchi;
Makoto Aino;
Toshihide Noguchi;
Yoshihiro Shimazaki;
Akio Mitani;
Mitsuo Fukuda;
Iwamura, Yuki;
Hayashi, Jun-Ichiro;
Sato, Takashi;
Sato, Sota;
Murakami, Taeko

Publication type:

journal article

Angiopoietin-like protein 2 regulates Porphyromonas gingivalis lipopolysaccharide-induced inflammatory response in human gingival epithelial cells.

Published in:

PLoS ONE, 2017, v. 12, n. 9, p. 1, doi. 10.1371/journal.pone.0184825

By:

Ohno, Tasuku;
Yamamoto, Genta;
Hayashi, Jun-ichiro;
Nishida, Eisaku;
Goto, Hisashi;
Sasaki, Yasuyuki;
Kikuchi, Takeshi;
Fukuda, Mitsuo;
Hasegawa, Yoshiaki;
Mogi, Makio;
Mitani, Akio

Publication type:

Article

Lipopolysaccharide-Mediated Enhancement of Bone Metabolism in Estrogen-Deficient Mice.

Published in:

Journal of Periodontology, 2008, v. 79, n. 11, p. 2173, doi. 10.1902/jop.2008.070127

By:

Fujita, Sachiko;
Kikuchi, Takeshi;
Sobue, Takanori;
Suzuki, Mariyo;
Koide, Masanori;
Noguchi, Toshihide

Publication type:

Article

Prediction of folding pathway and kinetics among plant hemoglobins using an average distance map method.

Published in:

Proteins, 2005, v. 61, n. 3, p. 500, doi. 10.1002/prot.20658

By:

Nakajima, Shunsuke;
Álvarez-Salgado, Emma;
Kikuchi, Takeshi;
Arredondo-Peter, Raúl

Publication type:

Article

Analysis of the differences in the folding kinetics of structurally homologous proteins based on predictions of the gross features of residue contacts.

Published in:

Proteins, 2003, v. 51, n. 4, p. 515, doi. 10.1002/prot.10378

By:

Takehiro Ichimaru;
Takeshi Kikuchi

Publication type:

Article

Longitudinal study on the effect of keratinized mucosal augmentation surrounding dental implants in preventing peri-implant bone loss.

Published in:

PeerJ, 2022, p. 1, doi. 10.7717/peerj.13598

By:

Takeshi Kikuchi;
Masahiro Wada;
Tomoaki Mameno;
Daisuke Hasegawa;
Giovanni Serino;
Kazunori Ikebe

Publication type:

Article

Distribution of Porphyromonas gingivalis fimA and mfa1 fimbrial genotypes in subgingival plaques.

Published in:

PeerJ, 2018, p. 1, doi. 10.7717/peerj.5581

By:

Keiji Nagano;
Yoshiaki Hasegawa;
Yura Iijima;
Takeshi Kikuchi;
Akio Mitani

Publication type:

Article

Similar Structures to the E-to-H Helix Unit in the Globin-Like Fold are Found in Other Helical Folds.

Published in:

Biomolecules (2218-273X), 2014, v. 4, n. 1, p. 268, doi. 10.3390/biom4010268

By:

Masanari Matsuoka;
Aoi Fujita;
Yosuke Kawai;
Takeshi Kikuchi

Publication type:

Article

Therapeutic potential for insulin on type 1 diabetes‐associated periodontitis: Analysis of experimental periodontitis in streptozotocin‐induced diabetic rats.

Published in:

Journal of Diabetes Investigation, 2020, v. 11, n. 6, p. 1482, doi. 10.1111/jdi.13276

By:

Nishikawa, Toru;
Suzuki, Yuki;
Sawada, Noritaka;
Kobayashi, Yasuko;
Nakamura, Nobuhisa;
Miyabe, Megumi;
Miyajima, Shin‐ichi;
Adachi, Kei;
Minato, Tomomi;
Mizutani, Makoto;
Toriumi, Taku;
Ohno, Norikazu;
Kikuchi, Takeshi;
Honda, Masaki;
Noguchi, Toshihide;
Mitani, Akio;
Matsubara, Tatsuaki;
Naruse, Keiko

Publication type:

Article

Anti-inflammatory role of glucose-dependent insulinotropic polypeptide in periodontitis.

Published in:

Journal of Diabetes Investigation, 2016, v. 7, n. 4, p. 497, doi. 10.1111/jdi.12450

By:

Suzuki, Yuki;
Nakamura, Nobuhisa;
Miyabe, Megumi;
Nishikawa, Toru;
Miyajima, Shin‐ichi;
Adachi, Kei;
Mizutani, Makoto;
Kikuchi, Takeshi;
Miyazawa, Ken;
Goto, Shigemi;
Tsukiyama, Katsushi;
Yamada, Yuichiro;
Ohno, Norikazu;
Noguchi, Toshihide;
Mitani, Akio;
Matsubara, Tatsuaki;
Naruse, Keiko

Publication type:

Article

Nucleotide-Binding Sites in V-Type Na+-ATPase from Enterococcus hirae1.

Published in:

Journal of Biochemistry, 2002, v. 132, n. 5, p. 789, doi. 10.1093/oxfordjournals.jbchem.a003288

By:

Murata, Takeshi;
Yoshikawa, Yasushi;
Hosaka, Toshiaki;
Takase, Kazuma;
Kakinuma, Yoshimi;
Yamato, Ichiro;
Kikuchi, Takeshi

Publication type:

Article

The Stabilized Structural Array of Two HMGl/2–Boxes Endowed by a Linker Sequence between Them Is Requisite for the Effective Binding of HMG1 with DNA.

Published in:

Journal of Biochemistry, 1999, v. 125, n. 2, p. 399, doi. 10.1093/oxfordjournals.jbchem.a022300

By:

Saito, Kouhei;
Kikuchi, Takeshi;
Shirakawa, Hitoshi;
Yoshida, Michiteru

Publication type:

Article

Absence of Binding Between the Human Transferrin Receptor and the Transferrin Complex of Biological Toxic Trace Element, Aluminum, Because of an Incomplete Open/Closed Form of the Complex.

Published in:

Biological Trace Element Research, 2010, v. 136, n. 3, p. 279, doi. 10.1007/s12011-009-8547-y

By:

Sakajiri, Tetsuya;
Yamamura, Takaki;
Kikuchi, Takeshi;
Ichimura, Kaoru;
Sawada, Takako;
Yajima, Hirofumi

Publication type:

Article

Non-Native Structures of Apomyoglobin and Apoleghemoglobin in Folding Intermediates Related to the Protein Misfolding.

Published in:

Molecules, 2023, v. 28, n. 9, p. 3970, doi. 10.3390/molecules28093970

By:

Nishimura, Chiaki;
Kikuchi, Takeshi

Publication type:

Article

Decoding an Amino Acid Sequence to Extract Information on Protein Folding.

Published in:

Molecules, 2022, v. 27, n. 9, p. 3020, doi. 10.3390/molecules27093020

By:

Kikuchi, Takeshi

Publication type:

Article

Structural Refolding and Thermal Stability of Myoglobin in the Presence of Mixture of Crowders: Importance of Various Interactions for Protein Stabilization in Crowded Conditions.

Published in:

Molecules, 2021, v. 26, n. 9, p. 2807, doi. 10.3390/molecules26092807

By:

Parray, Zahoor Ahmad;
Ahmad, Faizan;
Hassan, Md. Imtaiyaz;
Ahmed, Anwar;
Almajhdi, Fahad N.;
Malik, Ajamaluddin;
Hussain, Tajamul;
Islam, Asimul;
Kikuchi, Takeshi

Publication type:

Article

Implication of the cause of differences in 3D structures of proteins with high sequence identity based on analyses of amino acid sequences and 3D structures.

Published in:

BMC Research Notes, 2014, v. 7, n. 1, p. 654, doi. 10.1186/1756-0500-7-654

By:

Masanari Matsuoka;
Masatake Sugita;
Takeshi Kikuchi

Publication type:

Article

Theoretical studies of hemoproteins. I. Mathematical description of the allosteric effect.

Published in:

International Journal of Quantum Chemistry, 1979, v. 15, n. 4, p. 379, doi. 10.1002/qua.560150404

By:

Kikuchi, Takeshi;
Nishimoto, Kichisuke

Publication type:

Article

Rapid SNP diagnostics using asymmetric isothermal amplification and a new mismatch-suppression technology.

Published in:

Nature Methods, 2007, v. 4, n. 3, p. 257, doi. 10.1038/nmeth1007

By:

Mitani, Yasumasa;
Lezhava, Alexander;
Kawai, Yuki;
Kikuchi, Takeshi;
Oguchi-Katayama, Atsuko;
Kogo, Yasushi;
Itoh, Masayoshi;
Miyagi, Toru;
Takakura, Hideki;
Hoshi, Kanako;
Kato, Chiaki;
Arakawa, Takahiro;
Shibata, Kazuhiro;
Fukui, Kenji;
Masui, Ryoji;
Kuramitsu, Seiki;
Kiyotani, Kazuma;
Chalk, Alistair;
Tsunekawa, Katsuhiko;
Murakami, Masami

Publication type:

Article

A new method for estimating the relative binding free energy, derived from a free energy variational principle for the Pim-1-kinase–ligand and FKBP–ligand systems.

Published in:

Journal of Computer-Aided Molecular Design, 2020, v. 34, n. 6, p. 647, doi. 10.1007/s10822-020-00302-4

By:

Ashida, Takeshi;
Kikuchi, Takeshi

Publication type:

Article

Estimation of relative binding free energy based on a free energy variational principle for the FKBP-ligand system.

Published in:

Journal of Computer-Aided Molecular Design, 2013, v. 27, n. 6, p. 479, doi. 10.1007/s10822-013-9657-3

By:

Ashida, Takeshi;
Kikuchi, Takeshi

Publication type:

Article

Porphyromonas gingivalis Mfa1 Induces Chemokine and Cell Adhesion Molecules in Mouse Gingival Fibroblasts via Toll-Like Receptors.

Published in:

Journal of Clinical Medicine, 2020, v. 9, n. 12, p. 4004, doi. 10.3390/jcm9124004

By:

Takayanagi, Yuhei;
Kikuchi, Takeshi;
Hasegawa, Yoshiaki;
Naiki, Yoshikazu;
Goto, Hisashi;
Okada, Kousuke;
Okabe, Iichiro;
Kamiya, Yosuke;
Suzuki, Yuki;
Sawada, Noritaka;
Okabe, Teppei;
Kondo, Shun;
Ohno, Tasuku;
Hayashi, Jun-Ichiro;
Mitani, Akio

Publication type:

Article