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Aethionema arabicum : a novel model plant to study the light control of seed germination.
Published in:
Journal of Experimental Botany, 2019, v. 70, n. 12, p. 3313, doi. 10.1093/jxb/erz146
By:
- Mérai, Zsuzsanna;
- Graeber, Kai;
- Wilhelmsson, Per;
- Ullrich, Kristian K;
- Arshad, Waheed;
- Grosche, Christopher;
- Tarkowská, Danuše;
- Turečková, Veronika;
- Strnad, Miroslav;
- Rensing, Stefan A;
- Leubner-Metzger, Gerhard;
- Scheid, Ortrun Mittelsten
Publication type:
Article
oggmap: a Python package to extract gene ages per orthogroup and link them with single-cell RNA data.
Published in:
Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad657
By:
- Ullrich, Kristian K;
- Glytnasi, Nikoleta E
Publication type:
Article
Access to RNA-sequencing data from 1,173 plant species: The 1000 Plant transcriptomes initiative (1KP).
Published in:
GigaScience, 2019, v. 8, n. 10, p. N.PAG, doi. 10.1093/gigascience/giz126
By:
- Carpenter, Eric J;
- Matasci, Naim;
- Ayyampalayam, Saravanaraj;
- Wu, Shuangxiu;
- Sun, Jing;
- Yu, Jun;
- Jimenez Vieira, Fabio Rocha;
- Bowler, Chris;
- Dorrell, Richard G;
- Gitzendanner, Matthew A;
- Li, Ling;
- Du, Wensi;
- K. Ullrich, Kristian;
- Wickett, Norman J;
- Barkmann, Todd J;
- Barker, Michael S;
- Leebens-Mack, James H;
- Wong, Gane Ka-Shu
Publication type:
Article
PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens.
Published in:
Plant Journal, 2020, v. 102, n. 1, p. 165, doi. 10.1111/tpj.14607
By:
- Fernandez‐Pozo, Noe;
- Haas, Fabian B.;
- Meyberg, Rabea;
- Ullrich, Kristian K.;
- Hiss, Manuel;
- Perroud, Pierre‐François;
- Hanke, Sebastian;
- Kratz, Viktor;
- Powell, Adrian F.;
- Vesty, Eleanor F.;
- Daum, Christopher G.;
- Zane, Matthew;
- Lipzen, Anna;
- Sreedasyam, Avinash;
- Grimwood, Jane;
- Coates, Juliet C.;
- Barry, Kerrie;
- Schmutz, Jeremy;
- Mueller, Lukas A.;
- Rensing, Stefan A.
Publication type:
Article
The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data.
Published in:
Plant Journal, 2018, v. 95, n. 1, p. 168, doi. 10.1111/tpj.13940
By:
- Perroud, Pierre‐François;
- Haas, Fabian B.;
- Hiss, Manuel;
- Ullrich, Kristian K.;
- Alboresi, Alessandro;
- Amirebrahimi, Mojgan;
- Barry, Kerrie;
- Bassi, Roberto;
- Bonhomme, Sandrine;
- Chen, Haodong;
- Coates, Juliet C.;
- Fujita, Tomomichi;
- Guyon‐Debast, Anouchka;
- Lang, Daniel;
- Lin, Junyan;
- Lipzen, Anna;
- Nogué, Fabien;
- Oliver, Melvin J.;
- Ponce de León, Inés;
- Quatrano, Ralph S.
Publication type:
Article
The <italic>Physcomitrella patens</italic> chromosome‐scale assembly reveals moss genome structure and evolution.
Published in:
Plant Journal, 2018, v. 93, n. 3, p. 515, doi. 10.1111/tpj.13801
By:
- Lang, Daniel;
- Ullrich, Kristian K.;
- Murat, Florent;
- Fuchs, Jörg;
- Jenkins, Jerry;
- Haas, Fabian B.;
- Piednoel, Mathieu;
- Gundlach, Heidrun;
- Van Bel, Michiel;
- Meyberg, Rabea;
- Vives, Cristina;
- Morata, Jordi;
- Symeonidi, Aikaterini;
- Hiss, Manuel;
- Muchero, Wellington;
- Kamisugi, Yasuko;
- Saleh, Omar;
- Blanc, Guillaume;
- Decker, Eva L.;
- van Gessel, Nico
Publication type:
Article
Sexual reproduction, sporophyte development and molecular variation in the model moss Physcomitrella patens: introducing the ecotype Reute.
Published in:
Plant Journal, 2017, v. 90, n. 3, p. 606, doi. 10.1111/tpj.13501
By:
- Hiss, Manuel;
- Meyberg, Rabea;
- Westermann, Jens;
- Haas, Fabian B.;
- Schneider, Lucas;
- Schallenberg‐Rüdinger, Mareike;
- Ullrich, Kristian K.;
- Rensing, Stefan A.
Publication type:
Article
Evidence of divergent selection for drought and cold tolerance at landscape and local scales in Abies alba Mill. in the French Mediterranean Alps.
Published in:
Molecular Ecology, 2016, v. 25, n. 3, p. 776, doi. 10.1111/mec.13516
By:
- Roschanski, Anna M.;
- Csilléry, Katalin;
- Liepelt, Sascha;
- Oddou‐Muratorio, Sylvie;
- Ziegenhagen, Birgit;
- Huard, Frédéric;
- Ullrich, Kristian K.;
- Postolache, Dragos;
- Vendramin, Giovanni G.;
- Fady, Bruno
Publication type:
Article
Functional analysis of COP1 and SPA orthologs from Physcomitrella and rice during photomorphogenesis of transgenic Arabidopsis reveals distinct evolutionary conservation.
Published in:
BMC Plant Biology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/1471-2229-14-178
By:
- Ranjan, Aashish;
- Dickopf, Stephen;
- Ullrich, Kristian K.;
- Rensing, Stefan A.;
- Hoecker, Ute
Publication type:
Article
The amylase gene cluster in house mice (Mus musculus) was subject to repeated introgression including the rescue of a pseudogene.
Published in:
BMC Evolutionary Biology, 2020, v. 20, n. 1, p. 1, doi. 10.1186/s12862-020-01624-5
By:
- Linnenbrink, Miriam;
- Ullrich, Kristian K.;
- McConnell, Ellen;
- Tautz, Diethard
Publication type:
Article
Optical genome mapping of structural variants in Parkinson's disease-related induced pluripotent stem cells.
Published in:
BMC Genomics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12864-024-10902-1
By:
- Trinh, Joanne;
- Schaake, Susen;
- Gabbert, Carolin;
- Lüth, Theresa;
- Cowley, Sally A.;
- Fienemann, André;
- Ullrich, Kristian K.;
- Klein, Christine;
- Seibler, Philip
Publication type:
Article
The dimorphic diaspore model Aethionema arabicum (Brassicaceae): Distinct molecular and morphological control of responses to parental and germination temperatures.
Published in:
Plant Cell, 2024, v. 36, n. 7, p. 2465, doi. 10.1093/plcell/koae085
By:
- Chandler, Jake O;
- Wilhelmsson, Per K I;
- Fernandez-Pozo, Noe;
- Graeber, Kai;
- Arshad, Waheed;
- Pérez, Marta;
- Steinbrecher, Tina;
- Ullrich, Kristian K;
- Nguyen, Thu-Phuong;
- Mérai, Zsuzsanna;
- Mummenhoff, Klaus;
- Theißen, Günter;
- Strnad, Miroslav;
- Scheid, Ortrun Mittelsten;
- Schranz, M Eric;
- Petřík, Ivan;
- Tarkowská, Danuše;
- Novák, Ondřej;
- Rensing, Stefan A;
- Leubner-Metzger, Gerhard
Publication type:
Article
A DELAY OF GERMINATION 1 (DOG1)‐like protein regulates spore germination in the moss Physcomitrium patens.
Published in:
Plant Journal, 2024, v. 117, n. 3, p. 909, doi. 10.1111/tpj.16537
By:
- Vollmeister, Evelyn;
- Phokas, Alexandros;
- Meyberg, Rabea;
- Böhm, Clemens V.;
- Peter, Marlies;
- Kohnert, Eva;
- Yuan, Jinhong;
- Grosche, Christopher;
- Göttig, Marco;
- Ullrich, Kristian K.;
- Perroud, Pierre‐François;
- Hiltbrunner, Andreas;
- Kreutz, Clemens;
- Coates, Juliet C.;
- Rensing, Stefan A.
Publication type:
Article
The effect of auxin (indole-3-acetic acid) on the growth rate and tropism of the sporangiophore of Phycomyces blakesleeanus and identification of auxin-related genes.
Published in:
Protoplasma, 2018, v. 255, n. 5, p. 1331, doi. 10.1007/s00709-018-1232-2
By:
- Živanović, Branka D.;
- Ullrich, Kristian K.;
- Steffens, Bianka;
- Spasić, Sladjana Z.;
- Galland, Paul
Publication type:
Article
Combination of the Endogenous lhcsr1 Promoter and Codon Usage Optimization Boosts Protein Expression in the Moss Physcomitrella patens.
Published in:
Frontiers in Plant Science, 2017, p. 1, doi. 10.3389/fpls.2017.01842
By:
- Hiss, Manuel;
- Schneider, Lucas;
- Grosche, Christopher;
- Barth, Melanie A.;
- Neu, Christina;
- Symeonidi, Aikaterini;
- Ullrich, Kristian K.;
- Perroud, Pierre-François;
- Schallenberg-Rüdinger, Mareike;
- Rensing, Stefan A.
Publication type:
Article
Comprehensive Genome-Wide Classification Reveals That Many Plant-Specific Transcription Factors Evolved in Streptophyte Algae.
Published in:
Genome Biology & Evolution, 2017, v. 9, n. 12, p. 3384, doi. 10.1093/gbe/evx258
By:
- Wilhelmsson, Per K. I.;
- Mühlich, Cornelia;
- Ullrich, Kristian K.;
- Rensing, Stefan A.
Publication type:
Article
Selfing in Haploid Plants and Efficacy of Selection: Codon Usage Bias in the Model Moss Physcomitrella patens.
Published in:
Genome Biology & Evolution, 2017, v. 9, n. 6, p. 1528, doi. 10.1093/gbe/evx098
By:
- Szövényi, Péter;
- Ullrich, Kristian K.;
- Rensing, Stefan A.;
- Lang, Daniel;
- van Gessel, Nico;
- Stenøien, Hans K.;
- Conti, Elena;
- Reski, Ralf
Publication type:
Article
Localization and Evolution of Putative Triose Phosphate Translocators in the Diatom Phaeodactylum tricornutum.
Published in:
Genome Biology & Evolution, 2015, v. 7, n. 11, p. 2955, doi. 10.1093/gbe/evv190
By:
- Moog, Daniel;
- Rensing, Stefan A.;
- Archibald, John M.;
- Maier, Uwe G.;
- Ullrich, Kristian K.
Publication type:
Article
Dedicated transcriptomics combined with power analysis lead to functional understanding of genes with weak phenotypic changes in knockout lines.
Published in:
PLoS Computational Biology, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.pcbi.1008354
By:
- Xie, Chen;
- Bekpen, Cemalettin;
- Künzel, Sven;
- Keshavarz, Maryam;
- Krebs-Wheaton, Rebecca;
- Skrabar, Neva;
- Ullrich, Kristian K.;
- Zhang, Wenyu;
- Tautz, Diethard
Publication type:
Article
Extensive variation in the intelectin gene family in laboratory and wild mouse strains.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-94679-3
By:
- Almalki, Faisal;
- Nonnecke, Eric B.;
- Castillo, Patricia A.;
- Bevin-Holder, Alex;
- Ullrich, Kristian K.;
- Lönnerdal, Bo;
- Odenthal-Hesse, Linda;
- Bevins, Charles L.;
- Hollox, Edward J.
Publication type:
Article
Natural variation in the zinc-finger-encoding exon of Prdm9 affects hybrid sterility phenotypes in mice.
Published in:
Genetics, 2024, v. 226, n. 3, p. 1, doi. 10.1093/genetics/iyae004
By:
- AbuAlia, Khawla F N;
- Damm, Elena;
- Ullrich, Kristian K;
- Mukaj, Amisa;
- Parvanov, Emil;
- Forejt, Jiri;
- Odenthal-Hesse, Linda
Publication type:
Article
Protoplast Swelling and Hypocotyl Growth Depend on Different Auxin Signaling Pathways.
Published in:
Plant Physiology, 2017, v. 175, n. 2, p. 982, doi. 10.1104/pp.17.00733
By:
- Dahlke, Renate I.;
- Fraas, Simon;
- Ullrich, Kristian K.;
- Heinemann, Kirka;
- Romeiks, Maren;
- Rickmeyer, Thomas;
- Klebe, Gerhard;
- Palme, Klaus;
- Lüthen, Hartwig;
- Steffens, Bianka
Publication type:
Article
Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds.
Published in:
BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-5452-4
By:
- Wilhelmsson, Per K. I.;
- Chandler, Jake O.;
- Fernandez-Pozo, Noe;
- Graeber, Kai;
- Ullrich, Kristian K.;
- Arshad, Waheed;
- Khan, Safina;
- Hofberger, Johannes A.;
- Buchta, Karl;
- Edger, Patrick P.;
- Pires, J. Chris;
- Schranz, M. Eric;
- Leubner-Metzger, Gerhard;
- Rensing, Stefan A.
Publication type:
Article
Detection of somatic epigenetic variation in Norway spruce via targeted bisulfite sequencing.
Published in:
Ecology & Evolution (20457758), 2018, v. 8, n. 19, p. 9672, doi. 10.1002/ece3.4374
By:
- Heer, Katrin;
- Ullrich, Kristian K.;
- Hiss, Manuel;
- Liepelt, Sascha;
- Schulze Brüning, Ralf;
- Zhou, Jiabin;
- Opgenoorth, Lars;
- Rensing, Stefan A.
Publication type:
Article
Correction to: Delayed differentiation of epidermal cells walls can underlie pedomorphosis in plants: the case of pedomorphic petals in the hummingbird-pollinated Caiophora hibiscifolia (Loasaceae, subfam. Loasoideae) species.
Published in:
2022
By:
- Strelin, Marina M.;
- Zattara, Eduardo E.;
- Ullrich, Kristian K.;
- Schallenberg‑Rüdinger, Mareike;
- Rensing, Stefan A.
Publication type:
Correction Notice
Evolution of the recombination regulator PRDM9 in minke whales.
Published in:
BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08305-1
By:
- Damm, Elena;
- Ullrich, Kristian K.;
- Amos, William B.;
- Odenthal-Hesse, Linda
Publication type:
Article

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