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Importations of SARS-CoV-2 lineages decline after nonpharmaceutical interventions in phylogeographic analyses.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-48641-2
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- Article
Reconstructing relative transmission rates in Bayesian phylodynamics: Two-fold transmission advantage of Omicron in Berlin, Germany during December 2021.
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- Virus Evolution, 2023, v. 9, n. 2, p. 1, doi. 10.1093/ve/vead070
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- Article
Phylogenetic analysis of the origin and spread of plague in Madagascar.
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- PLoS Neglected Tropical Diseases, 2023, v. 16, n. 5, p. 1, doi. 10.1371/journal.pntd.0010362
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- Article
REVELATIONS ON PAST EPIDEMICS THROUGH ANCIENT TREPONEMA PALLIDUM GENOMES.
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- Vilnius University Proceedings, 2022, n. 6, p. 104
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- Article
AN EARLY HISTORY OF THE SECOND PLAGUE PANDEMIC IN 14TH-CENTURY CENTRAL EURASIA.
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- Vilnius University Proceedings, 2022, n. 6, p. 149
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- Article
Robust Phylodynamic Analysis of Genetic Sequencing Data from Structured Populations.
- Published in:
- Viruses (1999-4915), 2022, v. 14, n. 8, p. 1648, doi. 10.3390/v14081648
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- Article
Women in the European Virus Bioinformatics Center.
- Published in:
- Viruses (1999-4915), 2022, v. 14, n. 7, p. N.PAG, doi. 10.3390/v14071522
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- Publication type:
- Article
Molecular Epidemiology and Transmission Dynamics of the HIV-1 Epidemic in Ethiopia: Epidemic Decline Coincided With Behavioral Interventions Before ART Scale-Up.
- Published in:
- Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.821006
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- Publication type:
- Article
Rapid incidence estimation from SARS-CoV-2 genomes reveals decreased case detection in Europe during summer 2020.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26267-y
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- Article
A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex.
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- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02112-1
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- Article
Tracing the Impact of Public Health Interventions on HIV-1 Transmission in Portugal Using Molecular Epidemiology.
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- 2019
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- Publication type:
- journal article
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis.
- Published in:
- PLoS Computational Biology, 2019, v. 15, n. 4, p. 1, doi. 10.1371/journal.pcbi.1006650
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- Article
In-host evolution of Staphylococcus epidermidis in a pacemaker-associated endocarditis resulting in increased antibiotic tolerance.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-09053-9
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- Publication type:
- Article
Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-04550-9
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- Publication type:
- Article
Quantifying the fitness cost of HIV-1 drug resistance mutations through phylodynamics.
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- PLoS Pathogens, 2018, v. 14, n. 2, p. 1, doi. 10.1371/journal.ppat.1006895
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- Publication type:
- Article
Phenotypic deficits in the HIV-1 envelope are associated with the maturation of a V2-directed broadly neutralizing antibody lineage.
- Published in:
- PLoS Pathogens, 2018, v. 14, n. 1, p. 1, doi. 10.1371/journal.ppat.1006825
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- Article
Taming the BEAST--A Community Teaching Material Resource for BEAST 2.
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- Systematic Biology, 2018, v. 67, n. 1, p. 170, doi. 10.1093/sysbio/syx060
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- Article
Phylodynamics with Migration: A Computational Framework to Quantify Population Structure from Genomic Data.
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- Molecular Biology & Evolution, 2016, v. 33, n. 8, p. 2102, doi. 10.1093/molbev/msw064
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- Publication type:
- Article
Spatiotemporal dynamics of Puumala hantavirus associated with its rodent host, Myodes glareolus.
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- Evolutionary Applications, 2015, v. 8, n. 6, p. 545, doi. 10.1111/eva.12263
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- Article
The contrasting phylodynamics of human influenza B viruses.
- Published in:
- eLife, 2015, p. 1, doi. 10.7554/eLife.05055.001
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- Article
BEAST 2: A Software Platform for Bayesian Evolutionary Analysis.
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- PLoS Computational Biology, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003537
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- Article
Insights into the Early Epidemic Spread of Ebola in Sierra Leone Provided by Viral Sequence Data.
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- PLoS Currents, 2014, p. 1, doi. 10.1371/currents.outbreaks.02bc6d927ecee7bbd33532ec8ba6a25f
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- Publication type:
- Article
Influenza A Virus Migration and Persistence in North American Wild Birds.
- Published in:
- PLoS Pathogens, 2013, v. 9, n. 8, p. 1, doi. 10.1371/journal.ppat.1003570
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- Article