Works by Junier, Ivan

Results: 18

PreCisIon: PREdiction of CIS-regulatory elements improved by gene’s positION.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 3, p. 1406, doi. 10.1093/nar/gks1286

By:

Elati, Mohamed;
Nicolle, Rémy;
Junier, Ivan;
Fernández, David;
Fekih, Rim;
Font, Julio;
Képès, François

Publication type:

Article

CTCF-mediated transcriptional regulation through cell type-specific chromosome organization in the β-globin locus.

Published in:

Nucleic Acids Research, 2012, v. 40, n. 16, p. 7718, doi. 10.1093/nar/gks536

By:

Junier, Ivan;
Dale, Ryan K.;
Hou, Chunhui;
Képès, François;
Dean, Ann

Publication type:

Article

Dynamics of the compartmentalized Streptomyces chromosome during metabolic differentiation.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25462-1

By:

Lioy, Virginia S.;
Lorenzi, Jean-Noël;
Najah, Soumaya;
Poinsignon, Thibault;
Leh, Hervé;
Saulnier, Corinne;
Aigle, Bertrand;
Lautru, Sylvie;
Thibessard, Annabelle;
Lespinet, Olivier;
Leblond, Pierre;
Jaszczyszyn, Yan;
Gorrichon, Kevin;
Varoquaux, Nelle;
Junier, Ivan;
Boccard, Frédéric;
Pernodet, Jean-Luc;
Bury-Moné, Stéphanie

Publication type:

Article

From structure to function of bacterial chromosomes: Evolutionary perspectives and ideas for new experiments.

Published in:

FEBS Letters, 2015, v. 589, n. 20PartA, p. 2996, doi. 10.1016/j.febslet.2015.07.002

By:

Lagomarsino, Marco Cosentino;
Espéli, Olivier;
Junier, Ivan

Publication type:

Article

On the demultiplexing of chromosome capture conformation data.

Published in:

FEBS Letters, 2015, v. 589, n. 20PartA, p. 3005, doi. 10.1016/j.febslet.2015.05.049

By:

Junier, Ivan;
Spill, Yannick G.;
Marti-Renom, Marc A.;
Beato, Miguel;
le Dily, François

Publication type:

Article

Conserved Units of Co-Expression in Bacterial Genomes: An Evolutionary Insight into Transcriptional Regulation.

Published in:

PLoS ONE, 2016, v. 11, n. 5, p. 1, doi. 10.1371/journal.pone.0155740

By:

Junier, Ivan;
Rivoire, Olivier

Publication type:

Article

DNA supercoiling in bacteria: state of play and challenges from a viewpoint of physics based modeling.

Published in:

Frontiers in Microbiology, 2023, p. 1, doi. 10.3389/fmicb.2023.1192831

By:

Junier, Ivan;
Ghobadpour, Elham;
Espeli, Olivier;
Everaers, Ralf

Publication type:

Article

Diversification of Ubiquinone Biosynthesis via Gene Duplications, Transfers, Losses, and Parallel Evolution.

Published in:

Molecular Biology & Evolution, 2023, v. 40, n. 10, p. 1, doi. 10.1093/molbev/msad219

By:

Kazemzadeh, Katayoun;
Pelosi, Ludovic;
Chenal, Clothilde;
Chobert, Sophie-Carole;
Chehade, Mahmoud Hajj;
Jullien, Margaux;
Flandrin, Laura;
Schmitt, William;
He, Qiqi;
Bouvet, Emma;
Jarzynka, Manon;
Varoquaux, Nelle;
Junier, Ivan;
Pierrel, Fabien;
Abby, Sophie S

Publication type:

Article

The layout of a bacterial genome.

Published in:

FEBS Letters, 2012, v. 586, n. 15, p. 2043, doi. 10.1016/j.febslet.2012.03.051

By:

Képès, François;
Jester, Brian C.;
Lepage, Thibaut;
Rafiei, Nafiseh;
Rosu, Bianca;
Junier, Ivan

Publication type:

Article

Unstructured intermediate states in single protein force experiments.

Published in:

Proteins, 2008, v. 71, n. 3, p. 1145, doi. 10.1002/prot.21802

By:

Junier, Ivan;
Ritort, Felix

Publication type:

Article

Supercoiled DNA and non-equilibrium formation of protein complexes: A quantitative model of the nucleoprotein ParBS partition complex.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 4, p. 1, doi. 10.1371/journal.pcbi.1008869

By:

Walter, Jean-Charles;
Lepage, Thibaut;
Dorignac, Jérôme;
Geniet, Frédéric;
Parmeggiani, Andrea;
Palmeri, John;
Bouet, Jean-Yves;
Junier, Ivan

Publication type:

Article

Periodic pattern detection in sparse boolean sequences.

Published in:

Algorithms for Molecular Biology, 2010, v. 5, p. 31, doi. 10.1186/1748-7188-5-31

By:

Junier, Ivan;
Hérisson, Joan;
Képès, François

Publication type:

Article

Spatial and Topological Organization of DNA Chains Induced by Gene Co-localization.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 2, p. 1, doi. 10.1371/journal.pcbi.1000678

By:

Junier, Ivan;
Martin, Olivier;
Képès, François

Publication type:

Article

DciA secures bidirectional replication initiation in Vibrio cholerae.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 20, p. 12324, doi. 10.1093/nar/gkae795

By:

Besombes, Amelie;
Adam, Yazid;
Possoz, Christophe;
Junier, Ivan;
Barre, Francois-Xavier;
Ferat, Jean-Luc

Publication type:

Article

Assessing in vivo the impact of gene context on transcription through DNA supercoiling.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 18, p. 9509, doi. 10.1093/nar/gkad688

By:

Boulas, Ihab;
Bruno, Lisa;
Rimsky, Sylvie;
Espeli, Olivier;
Junier, Ivan;
Rivoire, Olivier

Publication type:

Article

Assessing the limits of restraint-based 3D modeling of genomes and genomic domains.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 7, p. 3465, doi. 10.1093/nar/gkv221

By:

Trussart, Marie;
Serra, François;
Baù, Davide;
Junier, Ivan;
Serrano, Luís;
Marti-Renom, Marc A.

Publication type:

Article

Polymer modeling of the E. coli genome reveals the involvement of locus positioning and macrodomain structuring for the control of chromosome conformation and segregation.

Published in:

Nucleic Acids Research, 2014, v. 42, n. 3, p. 1461, doi. 10.1093/nar/gkt1005

By:

Junier, Ivan;
Boccard, Frédéric;
Espéli, Olivier

Publication type:

Article

Experimental free-energy measurements of kinetic molecular states using fluctuation theorems.

Published in:

Nature Physics, 2012, v. 8, n. 9, p. 688, doi. 10.1038/nphys2375

By:

Alemany, Anna;
Mossa, Alessandro;
Junier, Ivan;
Ritort, Felix

Publication type:

Article