Works by Judith A. Blake

Results: 106
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    Finding Our Way through Phenotypes.

    Published in:
    2015
    By:
    • Deans, Andrew R.;
    • Lewis, Suzanna E.;
    • Huala, Eva;
    • Anzaldo, Salvatore S.;
    • Ashburner, Michael;
    • Balhoff, James P.;
    • Blackburn, David C.;
    • Blake, Judith A.;
    • Burleigh, J. Gordon;
    • Chanet, Bruno;
    • Cooper, Laurel D.;
    • Courtot, Mélanie;
    • Csösz, Sándor;
    • Cui, Hong;
    • Dahdul, Wasila;
    • Das, Sandip;
    • Dececchi, T. Alexander;
    • Dettai, Agnes;
    • Diogo, Rui;
    • Druzinsky, Robert E.
    Publication type:
    Opinion
    3

    GlyGen: Computational and Informatics Resources for Glycoscience.

    Published in:
    Glycobiology, 2020, v. 30, n. 2, p. 72, doi. 10.1093/glycob/cwz080
    By:
    • York, William S;
    • Mazumder, Raja;
    • Ranzinger, Rene;
    • Edwards, Nathan;
    • Kahsay, Robel;
    • Aoki-Kinoshita, Kiyoko F;
    • Campbell, Matthew P;
    • Cummings, Richard D;
    • Feizi, Ten;
    • Martin, Maria;
    • Natale, Darren A;
    • Packer, Nicolle H;
    • Woods, Robert J;
    • Agarwal, Gaurav;
    • Arpinar, Sena;
    • Bhat, Sanath;
    • Blake, Judith;
    • Castro, Leyla Jael Garcia;
    • Fochtman, Brian;
    • Gildersleeve, Jeffrey
    Publication type:
    Article
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    Reactome and the Gene Ontology: digital convergence of data resources.

    Published in:
    Bioinformatics, 2021, v. 37, n. 19, p. 3343, doi. 10.1093/bioinformatics/btab325
    By:
    • Good, Benjamin M;
    • Auken, Kimberly Van;
    • Hill, David P;
    • Mi, Huaiyu;
    • Carbon, Seth;
    • Balhoff, James P;
    • Albou, Laurent-Philippe;
    • Thomas, Paul D;
    • Mungall, Christopher J;
    • Blake, Judith A;
    • D'Eustachio, Peter
    Publication type:
    Article
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    The Protein Ontology: a structured representation of protein forms and complexes.

    Published in:
    Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D539, doi. 10.1093/nar/gkq907
    By:
    • Natale, Darren A.;
    • Arighi, Cecilia N.;
    • Barker, Winona C.;
    • Blake, Judith A.;
    • Bult, Carol J.;
    • Caudy, Michael;
    • Drabkin, Harold J.;
    • D’Eustachio, Peter;
    • Evsikov, Alexei V.;
    • Huang, Hongzhan;
    • Nchoutmboube, Jules;
    • Roberts, Natalia V.;
    • Smith, Barry;
    • Zhang, Jian;
    • Wu, Cathy H.
    Publication type:
    Article
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    11

    Towards BioDBcore: a community-defined information specification for biological databases.

    Published in:
    Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D7, doi. 10.1093/nar/gkq1173
    By:
    • Gaudet, Pascale;
    • Bairoch, Amos;
    • Field, Dawn;
    • Sansone, Susanna-Assunta;
    • Taylor, Chris;
    • Attwood, Teresa K.;
    • Bateman, Alex;
    • Blake, Judith A.;
    • Bult, Carol J.;
    • Cherry, J. Michael;
    • Chisholm, Rex L.;
    • Cochrane, Guy;
    • Cook, Charles E.;
    • Eppig, Janan T.;
    • Galperin, Michael Y.;
    • Gentleman, Robert;
    • Goble, Carole A.;
    • Gojobori, Takashi;
    • Hancock, John M.;
    • Howe, Douglas G.
    Publication type:
    Article
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    The mouse Gene Expression Database (GXD): updates and enhancements.

    Published in:
    Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d568
    By:
    • Hill, David P.;
    • Begley, Dale A.;
    • Finger, Jacqueline H.;
    • Hayamizu, Terry F.;
    • McCright, Ingeborg J.;
    • Smith, Constance M.;
    • Beal, Jon S.;
    • Corbani, Lori E.;
    • Blake, Judith A.;
    • Eppig, Janan T.;
    • Kadin, James A.;
    • Richardson, Joel E.;
    • Ringwald, Martin
    Publication type:
    Article
    20

    MGD: the Mouse Genome Database.

    Published in:
    Nucleic Acids Research, 2003, v. 31, n. 1, p. 193, doi. 10.1093/nar/gkg047
    By:
    • Blake, Judith A.;
    • Richardson, Joel E.;
    • Bult, Carol J.;
    • Kadin, Jim A.;
    • Eppig, Janan T.
    Publication type:
    Article
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    Gene Ontology: tool for the unification of biology.

    Published in:
    Nature Genetics, 2000, v. 25, n. 1, p. 25, doi. 10.1038/75556
    By:
    • Ashburner, Michael;
    • Ball, Catherine A.;
    • Blake, Judith A.;
    • Botstein, David;
    • Butler, Heather;
    • Cherry, J. Michael;
    • Davis, Allan P.;
    • Dolinski, Kara;
    • Dwight, Selina S.;
    • Eppig, Janan T.;
    • Harris, Midori A.;
    • Hill, David P.;
    • Issel-Tarver, Laurie;
    • Kasarskis, Andrew;
    • Lewis, Suzanna;
    • Matese, John C.;
    • Richardson, Joel E.;
    • Ringwald, Martin;
    • Rubin, Gerald M.
    Publication type:
    Article
    23

    Perplexing Pax: From puzzle to paradigm.

    Published in:
    Developmental Dynamics, 2008, v. 237, n. 10, p. 2791, doi. 10.1002/dvdy.21711
    By:
    • Blake, Judith A.;
    • Thomas, Meghan;
    • Thompson, Jennifer A.;
    • White, Robert;
    • Ziman, Melanie
    Publication type:
    Article
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    The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability.

    Published in:
    Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0088-7
    By:
    • Diehl, Alexander D.;
    • Meehan, Terrence F.;
    • Bradford, Yvonne M.;
    • Brush, Matthew H.;
    • Dahdul, Wasila M.;
    • Dougall, David S.;
    • Yongqun He;
    • Osumi-Sutherland, David;
    • Ruttenberg, Alan;
    • Sarntivijai, Sirarat;
    • Van Slyke, Ceri E.;
    • Vasilevsky, Nicole A.;
    • Haendel, Melissa A.;
    • Blake, Judith A.;
    • Mungall, Christopher J.
    Publication type:
    Article
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    The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology.

    Published in:
    Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0066-0
    By:
    • Jingshan Huang;
    • Eilbeck, Karen;
    • Smith, Barry;
    • Blake, Judith A.;
    • Dejing Dou;
    • Weili Huang;
    • Natale, Darren A.;
    • Ruttenberg, Alan;
    • Jun Huan;
    • Zimmermann, Michael T.;
    • Guoqian Jiang;
    • Yu Lin;
    • Bin Wu;
    • Strachan, Harrison J.;
    • Yongqun He;
    • Shaojie Zhang;
    • Xiaowei Wang;
    • Zixing Liu;
    • Borchert, Glen M.;
    • Ming Tan
    Publication type:
    Article
    36

    Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.

    Published in:
    Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-21
    By:
    • Haendel, Melissa A.;
    • Balhoff, James P.;
    • Bastian, Frederic B.;
    • Blackburn, David C.;
    • Blake, Judith A.;
    • Bradford, Yvonne;
    • Comte, Aurelie;
    • Dahdul, Wasila M.;
    • Dececchi, Thomas A.;
    • Druzinsky, Robert E.;
    • Hayamizu, Terry F.;
    • Ibrahim, Nizar;
    • Lewis, Suzanna E.;
    • Mabee, Paula M.;
    • Niknejad, Anne;
    • Robinson-Rechavi, Marc;
    • Sereno, Paul C.;
    • Mungall, Christopher J.
    Publication type:
    Article
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    REPLY TO SMITH.

    Published in:
    American Sociological Review, 1963, v. 28, n. 5, p. 812
    By:
    • Blake, Judith
    Publication type:
    Article
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    40

    Access to immunology through the Gene Ontology.

    Published in:
    Immunology, 2008, v. 125, n. 2, p. 154, doi. 10.1111/j.1365-2567.2008.02940.x
    By:
    • Lovering, Ruth C.;
    • Camon, Evelyn B.;
    • Blake, Judith A.;
    • Diehl, Alexander D.
    Publication type:
    Article
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    A method for increasing expressivity of Gene Ontology annotations using a compositional approach.

    Published in:
    BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-155
    By:
    • Huntley, Rachael P.;
    • Harris, Midori A.;
    • Alam-Faruque, Yasmin;
    • Blake, Judith A.;
    • Carbon, Seth;
    • Dietze, Heiko;
    • Dimmer, Emily C.;
    • Foulger, Rebecca E.;
    • Hil, David P.;
    • Khodiyar, Varsha K.;
    • Lock, Antonia;
    • Lomax, Jane;
    • Lovering, Ruth C.;
    • Mutowo-Meullenet, Prudence;
    • Sawford, Tony;
    • Auken, Kimberly Van;
    • Wood, Valerie;
    • Mungall, Christopher J.
    Publication type:
    Article
    43

    DFLAT: functional annotation for human development.

    Published in:
    BMC Bioinformatics, 2014, v. 15, n. 1, p. 2, doi. 10.1186/1471-2105-15-45
    By:
    • Wick, Heather C.;
    • Drabkin, Harold;
    • Ngu, Huy;
    • Sackman, Michael;
    • Fournier, Craig;
    • Haggett, Jessica;
    • Blake, Judith A.;
    • Bianchi, Diana W.;
    • Slonim, Donna K.
    Publication type:
    Article
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    Concept annotation in the CRAFT corpus.

    Published in:
    BMC Bioinformatics, 2012, v. 13, n. 1, p. 161, doi. 10.1186/1471-2105-13-161
    By:
    • Bada, Michael;
    • Eckert, Miriam;
    • Evans, Donald;
    • Garcia, Kristin;
    • Shipley, Krista;
    • Sitnikov, Dmitry;
    • Baumgartner Jr., William A.;
    • Cohen, K Bretonnel;
    • Verspoor, Karin;
    • Blake, Judith A;
    • Hunter, Lawrence
    Publication type:
    Article
    46

    Logical Development of the Cell Ontology.

    Published in:
    BMC Bioinformatics, 2011, v. 12, n. 1, p. 1, doi. 10.1186/1471-2105-12-6
    By:
    • Meehan, Terrence F.;
    • Masci, Anna Maria;
    • Abdulla, Amina;
    • Cowell, Lindsay G.;
    • Blake, Judith A.;
    • Mungall, Christopher J.;
    • Diehl, Alexander D.
    Publication type:
    Article
    47

    TGF-beta signaling proteins and the Protein Ontology.

    Published in:
    BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S5-S3
    By:
    • Arighi, Cecilia N.;
    • Hongfang Liu;
    • Natale, Darren A.;
    • Barker, Winona C.;
    • Drabkin, Harold;
    • Blake, Judith A.;
    • Smith, Barry;
    • Wu, Cathy H.
    Publication type:
    Article
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    Framework for a Protein Ontology.

    Published in:
    BMC Bioinformatics, 2007, v. 8, p. 1, doi. 10.1186/1471-2105-8-S9-S1
    By:
    • Natale, Darren A.;
    • Arighi, Cecilia N.;
    • Barker, Winona C.;
    • Blake, Judith;
    • Ti-Cheng Chang;
    • Zhangzhi Hu;
    • Hongfang Liu;
    • Smith, Barry;
    • Wu, Cathy H.
    Publication type:
    Article