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GlycoViewer: a tool for visual summary and comparative analysis of the glycome.
Published in:
Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W667, doi. 10.1093/nar/gkq446
By:
- Joshi, Hiren J.;
- von der Lieth, Claus-Wilhelm;
- Packer, Nicolle H.;
- Wilkins, Marc R.
Publication type:
Article
Sharing of worldwide distributed carbohydrate-related digital resources: online connection of the Bacterial Carbohydrate Structure DataBase and GLYCOSCIENCES.de.
Published in:
Nucleic Acids Research, 2007, v. 35, p. d280, doi. 10.1093/nar/gkl883
By:
- Toukach, Philip;
- Joshi, Hiren J;
- Ranzinger, René;
- Knirel, Yuri;
- von der Lieth, Claus-W.
Publication type:
Article
Display of the human mucinome with defined O-glycans by gene engineered cells.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24366-4
By:
- Nason, Rebecca;
- Büll, Christian;
- Konstantinidi, Andriana;
- Sun, Lingbo;
- Ye, Zilu;
- Halim, Adnan;
- Du, Wenjuan;
- Sørensen, Daniel M.;
- Durbesson, Fabien;
- Furukawa, Sanae;
- Mandel, Ulla;
- Joshi, Hiren J.;
- Dworkin, Leo Alexander;
- Hansen, Lars;
- David, Leonor;
- Iverson, Tina M.;
- Bensing, Barbara A.;
- Sullam, Paul M.;
- Varki, Ajit;
- Vries, Erik de
Publication type:
Article
Display of the human mucinome with defined O-glycans by gene engineered cells.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-24366-4
By:
- Nason, Rebecca;
- Büll, Christian;
- Konstantinidi, Andriana;
- Sun, Lingbo;
- Ye, Zilu;
- Halim, Adnan;
- Du, Wenjuan;
- Sørensen, Daniel M.;
- Durbesson, Fabien;
- Furukawa, Sanae;
- Mandel, Ulla;
- Joshi, Hiren J.;
- Dworkin, Leo Alexander;
- Hansen, Lars;
- David, Leonor;
- Iverson, Tina M.;
- Bensing, Barbara A.;
- Sullam, Paul M.;
- Varki, Ajit;
- Vries, Erik de
Publication type:
Article
An Integrative Approach to the Identification of Arabidopsis and Rice Genes Involved in Xylan and Secondary Wall Development.
Published in:
PLoS ONE, 2010, v. 5, n. 11, p. 1, doi. 10.1371/journal.pone.0015481
By:
- Oikawa, Ai;
- Joshi, Hiren J.;
- Rennie, Emilie A.;
- Ebert, Berit;
- Manisseri, Chithra;
- Heazlewood, Joshua L.;
- Scheller, Henrik Vibe
Publication type:
Article
Development of a mass fingerprinting tool for automated interpretation of oligosaccharide fragmentation data.
Published in:
Proteomics, 2004, v. 4, n. 6, p. 1650, doi. 10.1002/pmic.200300784
By:
- Hiren J. Joshi;
- Mathew J. Harrison;
- Benjamin L. Schulz;
- Catherine A. Cooper;
- Nicolle H. Packer;
- Niclas G. Karlsson
Publication type:
Article
O‐glycan initiation directs distinct biological pathways and controls epithelial differentiation.
Published in:
EMBO Reports, 2020, v. 21, n. 6, p. 1, doi. 10.15252/embr.201948885
By:
- Bagdonaite, Ieva;
- Pallesen, Emil MH;
- Ye, Zilu;
- Vakhrushev, Sergey Y;
- Marinova, Irina N;
- Nielsen, Mathias I;
- Kramer, Signe H;
- Pedersen, Stine F;
- Joshi, Hiren J;
- Bennett, Eric P;
- Dabelsteen, Sally;
- Wandall, Hans H
Publication type:
Article
Deconstruction of O-glycosylation--GalNAc-T isoforms direct distinct subsets of the O-glycoproteome.
Published in:
EMBO Reports, 2015, v. 16, n. 12, p. 1713, doi. 10.15252/embr.201540796
By:
- Schjoldager, Katrine T;
- Joshi, Hiren J;
- Kong, Yun;
- Goth, Christoffer K;
- King, Sarah Louise;
- Wandall, Hans H;
- Bennett, Eric P;
- Vakhrushev, Sergey Y;
- Clausen, Henrik
Publication type:
Article
Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology.
Published in:
EMBO Journal, 2013, v. 32, n. 10, p. 1478, doi. 10.1038/emboj.2013.79
By:
- Steentoft, Catharina;
- Vakhrushev, Sergey Y;
- Joshi, Hiren J;
- Kong, Yun;
- Vester‐Christensen, Malene B;
- Schjoldager, Katrine T‐B G;
- Lavrsen, Kirstine;
- Dabelsteen, Sally;
- Pedersen, Nis B;
- Marcos‐Silva, Lara;
- Gupta, Ramneek;
- Paul Bennett, Eric;
- Mandel, Ulla;
- Brunak, Søren;
- Wandall, Hans H;
- Levery, Steven B;
- Clausen, Henrik
Publication type:
Article
GlycoSuiteDB: a curated relational database of glycoprotein glycan structures and their biological sources. 2003 update.
Published in:
Nucleic Acids Research, 2003, v. 31, n. 1, p. 511, doi. 10.1093/nar/gkg099
By:
- Cooper, Catherine A.;
- Joshi, Hiren J.;
- Harrison, Mathew J.;
- Wilkins, Marc R.;
- Packer, Nicolle H.
Publication type:
Article
A Strategy for O-Glycoproteomics of Enveloped Viruses—the O-Glycoproteome of Herpes Simplex Virus Type 1.
Published in:
PLoS Pathogens, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.ppat.1004784
By:
- Bagdonaite, Ieva;
- Joshi, Hiren J.;
- Vakhrushev, Sergey Y.;
- Wandall, Hans H.;
- Nordén, Rickard;
- Nyström, Kristina;
- Olofsson, Sigvard;
- Dabelsteen, Sally
Publication type:
Article
MASCP Gator: An Aggregation Portal for the Visualization of Arabidopsis Proteomics Data.
Published in:
Plant Physiology, 2011, v. 155, n. 1, p. 259, doi. 10.1104/pp.110.168195
By:
- Joshi, Hiren J.;
- Hirsch-Hoffmann, Matthias;
- Baerenfaller, Katja;
- Gruissem, Wilhelm;
- Baginsky, Sacha;
- Schmidt, Robert;
- Schulze, Waltraud X.;
- Qi Sun;
- van Wijk, Klaas J.;
- Egelhofer, Volker;
- Wienkoop, Stefanie;
- Weckwerth, Wolfram;
- Bruley, Christophe;
- Rolland, Norbert;
- Toyoda, Tetsuro;
- Nakagami, Hirofumi;
- Jones, Alexandra M.;
- Briggs, Steven P.;
- Castleden, Ian;
- Tanz, Sandra K.
Publication type:
Article
Viral glycoproteomes: technologies for characterization and outlook for vaccine design.
Published in:
FEBS Letters, 2018, v. 592, n. 23, p. 3898, doi. 10.1002/1873-3468.13177
By:
- Bagdonaite, Ieva;
- Vakhrushev, Sergey Y.;
- Joshi, Hiren J.;
- Wandall, Hans H.
Publication type:
Article
A strategy for generating cancer-specific monoclonal antibodies to aberrant O-glycoproteins: identification of a novel dysadherin-Tn antibody.
Published in:
Glycobiology, 2019, v. 29, n. 4, p. 307, doi. 10.1093/glycob/cwz004
By:
- Steentoft, Catharina;
- Fuhrmann, Max;
- Battisti, Federico;
- Coillie, Julie Van;
- Madsen, Thomas D;
- Campos, Diana;
- Halim, Adnan;
- Vakhrushev, Sergey Y;
- Joshi, Hiren J;
- Schreiber, Hans;
- Mandel, Ulla;
- Narimatsu, Yoshiki
Publication type:
Article
Glycosyltransferase genes that cause monogenic congenital disorders of glycosylation are distinct from glycosyltransferase genes associated with complex diseases.
Published in:
Glycobiology, 2018, v. 28, n. 5, p. 284, doi. 10.1093/glycob/cwy015
By:
- Joshi, Hiren J.;
- Hansen, Lars;
- Yoshiki Narimatsu;
- Freeze, Hudson H.;
- Henrissat, Bernard;
- Bennett, Eric;
- Wandall, Hans H.;
- Clausen, Henrik;
- Schjoldager, Katrine T.
Publication type:
Article
A validated gRNA library for CRISPR/Cas9 targeting of the human glycosyltransferase genome.
Published in:
Glycobiology, 2018, v. 28, n. 5, p. 295, doi. 10.1093/glycob/cwx101
By:
- Yoshiki Narimatsu;
- Joshi, Hiren J.;
- Zhang Yang;
- Gomes, Catarina;
- Yen-Hsi Chen;
- Lorenzetti, Flaminia C.;
- Furukawa, Sanae;
- Schjoldager, Katrine T.;
- Hansen, Lars;
- Clausen, Henrik;
- Bennett, Eric P.;
- Wandall, Hans H.
Publication type:
Article
GlycoDomainViewer: a bioinformatics tool for contextual exploration of glycoproteomes.
Published in:
2018
By:
- Joshi, Hiren J.;
- Jørgensen, Anja;
- Schjoldager, Katrine T.;
- Halim, Adnan;
- Dworkin, Leo A.;
- Steentoft, Catharina;
- Wandall, Hans H.;
- Clausen, Henrik;
- Vakhrushev, Sergey Y.
Publication type:
Product Review
A glycogene mutation map for discovery of diseases of glycosylation.
Published in:
Glycobiology, 2015, v. 25, n. 2, p. 211, doi. 10.1093/glycob/cwu104
By:
- Hansen, Lars;
- Lind-Thomsen, Allan;
- Joshi, Hiren J.;
- Pedersen, Nis Borbye;
- Have, Christian Theil;
- Yun Kong;
- Shengjun Wang;
- Sparso, Thomas;
- Grarup, Niels;
- Vester-Christensen, Malene Bech;
- Schjoldager, Katrine;
- Freeze, Hudson H.;
- Hansen, Torben;
- Pedersen, Oluf;
- Henrissat, Bernard;
- Mandel, Ulla;
- Clausen, Henrik;
- Wandall, Hans H.;
- Bennett, Eric P.
Publication type:
Article
Probing polypeptide GalNAc-transferase isoform substrate specificities by in vitro analysis.
Published in:
Glycobiology, 2015, v. 25, n. 1, p. 55, doi. 10.1093/glycob/cwu089
By:
- Kong, Yun;
- Joshi, Hiren J;
- Schjoldager, Katrine Ter-Borch Gram;
- Madsen, Thomas Daugbjerg;
- Gerken, Thomas A;
- Vester-Christensen, Malene B;
- Wandall, Hans H;
- Bennett, Eric Paul;
- Levery, Steven B;
- Vakhrushev, Sergey Y;
- Clausen, Henrik
Publication type:
Article
EUROCarbDB: An open-access platform for glycoinformatics.
Published in:
Glycobiology, 2011, v. 21, n. 4, p. 493, doi. 10.1093/glycob/cwq188
By:
- von der Lieth, Claus-Wilhelm;
- Freire, Ana Ardá;
- Blank, Dennis;
- Campbell, Matthew P;
- Ceroni, Alessio;
- Damerell, David R;
- Dell, Anne;
- Dwek, Raymond A;
- Ernst, Beat;
- Fogh, Rasmus;
- Frank, Martin;
- Geyer, Hildegard;
- Geyer, Rudolf;
- Harrison, Mathew J;
- Henrick, Kim;
- Herget, Stefan;
- Hull, William E;
- Ionides, John;
- Joshi, Hiren J;
- Kamerling, Johannis P
Publication type:
Article
1001 Proteomes: a functional proteomics portal for the analysis of Arabidopsis thaliana accessions.
Published in:
Bioinformatics, 2012, v. 28, n. 10, p. 1303, doi. 10.1093/bioinformatics/bts133
By:
- Joshi, Hiren J.;
- Christiansen, Katy M.;
- Fitz, Joffrey;
- Cao, Jun;
- Lipzen, Anna;
- Martin, Joel;
- Smith-Moritz, A. Michelle;
- Pennacchio, Len A.;
- Schackwitz, Wendy S.;
- Weigel, Detlef;
- Heazlewood, Joshua L.
Publication type:
Article
Managing the green proteomes for the next decade of plant research.
Published in:
Frontiers in Plant Science, 2013, v. 4, p. 1, doi. 10.3389/fpls.2013.00501
By:
- Carroll, Andrew W.;
- Joshi, Hiren J.;
- Heazlewood, Joshua L.
Publication type:
Article
Managing the green proteomes for the next decade of plant research.
Published in:
Frontiers in Plant Science, 2013, v. 4, p. 1, doi. 10.3389/fpls.2013.00501
By:
- Carroll, Andrew W.;
- Joshi, Hiren J.;
- Heazlewood, Joshua L.
Publication type:
Article
MASCP Gator: An overview of the Arabidopsis proteomic 2 aggregation portal.
Published in:
Frontiers in Plant Science, 2013, v. 4, p. 1, doi. 10.3389/fpls.2013.00411
By:
- Mann, Gregory W.;
- Calley, Paul C.;
- Joshi, Hiren J.;
- Heazlewood, Joshua L.
Publication type:
Article
An atlas of O-linked glycosylation on peptide hormones reveals diverse biological roles.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-17473-1
By:
- Madsen, Thomas D.;
- Hansen, Lasse H.;
- Hintze, John;
- Ye, Zilu;
- Jebari, Shifa;
- Andersen, Daniel B.;
- Joshi, Hiren J.;
- Ju, Tongzhong;
- Goetze, Jens P.;
- Martin, Cesar;
- Rosenkilde, Mette M.;
- Holst, Jens J.;
- Kuhre, Rune E.;
- Goth, Christoffer K.;
- Vakhrushev, Sergey Y.;
- Schjoldager, Katrine T.
Publication type:
Article

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