Works matching AU Jongsik Chun

Results: 78

Longitudinal associations between gut microbiome diversity and emotional well-being.

Published in:

2024

By:

Lee, Sung-Ha;
Ku, Xyle;
Oh, Hyun-Seok;
Jung, Yeonjae;
Chun, Jongsik;
Choi, Incheol

Publication type:

Journal Article

Spatial Scaling Effects on Soil Bacterial Communities in Malaysian Tropical Forests.

Published in:

Microbial Ecology, 2014, v. 68, n. 2, p. 247, doi. 10.1007/s00248-014-0404-7

By:

Tripathi, Binu;
Lee-Cruz, Larisa;
Kim, Mincheol;
Singh, Dharmesh;
Go, Rusea;
Shukor, Noraini;
Husni, M.;
Chun, Jongsik;
Adams, Jonathan

Publication type:

Article

Tropical Soil Bacterial Communities in Malaysia: pH Dominates in the Equatorial Tropics Too.

Published in:

Microbial Ecology, 2012, v. 64, n. 2, p. 474, doi. 10.1007/s00248-012-0028-8

By:

Tripathi, Binu;
Kim, Mincheol;
Singh, Dharmesh;
Lee-Cruz, Larisa;
Lai-Hoe, Ang;
Ainuddin, A.;
Go, Rusea;
Rahim, Raha;
Husni, M.;
Chun, Jongsik;
Adams, Jonathan

Publication type:

Article

Distinctive Phyllosphere Bacterial Communities in Tropical Trees.

Published in:

Microbial Ecology, 2012, v. 63, n. 3, p. 674, doi. 10.1007/s00248-011-9953-1

By:

Kim, Mincheol;
Singh, Dharmesh;
Lai-Hoe, Ang;
Go, Rusea;
Abdul Rahim, Raha;
A.N., Ainuddin;
Chun, Jongsik;
Adams, Jonathan

Publication type:

Article

A Hump-Backed Trend in Bacterial Diversity with Elevation on Mount Fuji, Japan.

Published in:

Microbial Ecology, 2012, v. 63, n. 2, p. 429, doi. 10.1007/s00248-011-9900-1

By:

Singh, Dharmesh;
Takahashi, Koichi;
Kim, Mincheol;
Chun, Jongsik;
Adams, Jonathan

Publication type:

Article

Distinct Cutibacterium acnes subspecies defendens strains classified by multi-omics dissection alleviate inflammatory skin lesions of a rosacea-like mouse model.

Published in:

Frontiers in Microbiomes, 2024, p. 1, doi. 10.3389/frmbi.2024.1362408

By:

Kim, Hanseol;
Lee, Kihyun;
Lee, Ji Young;
Kwon, Bo Eun;
Kim, Hyun Jeong;
Park, Hyunkyung;
Kim, Taekyung;
Kwak, Jun-Gu;
Choi, Joung Eun;
Hong, Kwang Hee;
Chun, Jongsik;
Shin, Changsik

Publication type:

Article

The Effect of Probiotics on Gut Microbiota during the Helicobacter pylori Eradication: Randomized Controlled Trial.

Published in:

Helicobacter, 2016, v. 21, n. 3, p. 165, doi. 10.1111/hel.12270

By:

Oh, Bumjo;
Kim, Bong‐Soo;
Kim, Ji Won;
Kim, Jong Seung;
Koh, Seong‐Joon;
Kim, Byeong Gwan;
Lee, Kook Lae;
Chun, Jongsik

Publication type:

Article

Altered gut microbiome in convalescent patients with coronavirus disease 2019.

Published in:

Frontiers in Cellular & Infection Microbiology, 2024, p. 1, doi. 10.3389/fcimb.2024.1455295

By:

Lee, Kyoung Hwa;
Kim, Yeong Ouk;
Dho, So Hee;
Yong, Jen J. H.;
Oh, Hyun-Seok;
Lee, Je Hee;
Yang, Seung-Jo;
Cha, Inseong;
Chun, Jongsik;
Lee, Eun Hwa;
Jeong, Su Jin;
Woo, Wonjin;
Choi, Jae-Phil;
Han, Sang Hoon;
Choi, Gloria B.;
Huh, Jun R.;
Kim, Lark Kyun;
Song, Young Goo

Publication type:

Article

jPHYDIT: a JAVA-based integrated environment for molecular phylogeny of ribosomal RNA sequences.

Published in:

Bioinformatics, 2005, v. 21, n. 14, p. 3171, doi. 10.1093/bioinformatics/bti463

By:

Yoon-Seong Jeon;
Hwanwon Chung;
Sunyoung Park;
Inae Hur;
Jae-Hak Lee;
Jongsik Chun

Publication type:

Article

Clonality and Resistome Analysis of KPC-Producing Klebsiella pneumoniae Strain Isolated in Korea Using Whole Genome Sequencing.

Published in:

BioMed Research International, 2014, v. 2014, p. 1, doi. 10.1155/2014/352862

By:

Yangsoon Lee;
Bong-Soo Kim;
Jongsik Chun;
Ji Hyun Yong;
Yeong Seon Lee;
Jung Sik Yoo;
Dongeun Yong;
Seong Geun Hong;
Roshan D'Souza;
Thomson, Kenneth S.;
Kyungwon Lee;
Yunsop Chong

Publication type:

Article

Metagenomic Insights into the Bioaerosols in the Indoor and Outdoor Environments of Childcare Facilities.

Published in:

PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0126960

By:

Shin, Su-Kyoung;
Kim, Jinman;
Ha, Sung-min;
Oh, Hyun-Seok;
Chun, Jongsik;
Sohn, Jongryeul;
Yi, Hana

Publication type:

Article

A Vanillin Derivative Causes Mitochondrial Dysfunction and Triggers Oxidative Stress in Cryptococcus neoformans.

Published in:

PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0089122

By:

Kim, Jin Hyo;
Lee, Han-Ok;
Cho, Yong-Joon;
Kim, Jeongmi;
Chun, Jongsik;
Choi, Jaehyuk;
Lee, Younghoon;
Jung, Won Hee

Publication type:

Article

The Genome Sequence of ‘Mycobacterium massiliense’ Strain CIP 108297 Suggests the Independent Taxonomic Status of the Mycobacterium abscessus Complex at the Subspecies Level.

Published in:

PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0081560

By:

Cho, Yong-Joon;
Yi, Hana;
Chun, Jongsik;
Cho, Sang-Nae;
Daley, Charles L.;
Koh, Won-Jung;
Jae Shin, Sung

Publication type:

Article

Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae.

Published in:

BMC Microbiology, 2010, v. 10, p. 154, doi. 10.1186/1471-2180-10-154

By:

Haley, Bradd J.;
Grim, Christopher J.;
Hasan, Nur A.;
Seon-Young Choi;
Jongsik Chun;
Brettin, Thomas S.;
Bruce, David C.;
Challacombe, Jean F.;
Detter, J. Chris;
Han, Cliff S.;
Huq, Anwar;
Colwell, Rita R.

Publication type:

Article

The analysis of oral microbial communities of wild-type and toll-like receptor 2-deficient mice using a 454 GS FLX Titanium pyrosequencer.

Published in:

BMC Microbiology, 2010, v. 10, p. 101, doi. 10.1186/1471-2180-10-101

By:

Jongsik Chun;
Kim, Kap Y.;
Jae-Hak Lee;
Youngnim Choi

Publication type:

Article

Profiling bacterial community in upper respiratory tracts.

Published in:

BMC Infectious Diseases, 2014, v. 14, n. 1, p. 583, doi. 10.1186/s12879-014-0583-3

By:

Hana Yi;
Dongeun Yong;
Kyungwon Lee;
Yong-Joon Cho;
Jongsik Chun

Publication type:

Article

N-Acetylglucosaminidase activities in wetlands: a global survey.

Published in:

Hydrobiologia, 2004, v. 532, n. 1-3, p. 103, doi. 10.1007/s10750-004-9450-3

By:

Hojeong Kang;
Freeman, Chris;
Seok Soon Park;
Jongsik Chun

Publication type:

Article

Genome sequence of the organohalide-respiring Dehalogenimonas alkenigignens type strain (IP3-3T).

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0165-7

By:

Key, Trent A.;
Richmond, Dray P.;
Bowman, Kimberly S.;
Yong-Joon Cho;
Jongsik Chun;
da Costa, Milton S.;
Rainey, Fred A.;
Moe, William M.

Publication type:

Article

Complete genome sequence of Mycobacterium tuberculosis K from a Korean high school outbreak, belonging to the Beijing family.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0071-4

By:

Han, Seung;
Song, Taeksun;
Cho, Yong-Joon;
Kim, Jong-Seok;
Choi, Soo;
Bang, Hye-Eun;
Chun, Jongsik;
Bai, Gill-Han;
Cho, Sang-Nae;
Shin, Sung

Publication type:

Article

Genome sequence of the chromate-resistant bacterium Leucobacter salsicius type strain M1-8.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 495, doi. 10.4056/sigs.4708537

By:

Yun, Ji-Hyun;
Cho, Yong-Joon;
Chun, Jongsik;
Hyun, Dong-Wook;
Bae, Jin-Woo

Publication type:

Article

Genome sequence of the moderately halophilic bacterium Salinicoccus carnicancri type strain Crm (= DSM 23852).

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 2, p. 255, doi. 10.4056/sigs.3967649

By:

Hyun, Dong-Wook;
Whon, Tae;
Cho, Yong-Joon;
Chun, Jongsik;
Kim, Min-Soo;
Jung, Mi-Ja;
Shin, Na-Ri;
Kim, Joon-Yong;
Kim, Pil;
Yun, Ji-Hyun;
Lee, Jina;
Oh, Sei;
Bae, Jin-Woo

Publication type:

Article

VicPred: A Vibrio cholerae Genotype Prediction Tool.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.691895

By:

Lee, Imchang;
Ha, Sung-Min;
Baek, Min-gyung;
Kim, Dong Wook;
Yi, Hana;
Chun, Jongsik

Publication type:

Article

Metagenomic Association Analysis of Gut Symbiont Limosilactobacillus reuteri Without Host-Specific Genome Isolation.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.585622

By:

Park, Sein;
Steinegger, Martin;
Cho, Ho-Seong;
Chun, Jongsik

Publication type:

Article

Phylogenetic characterization ofLegionella-like endosymbiotic X-bacteria inAmoeba proteus: a proposal for‘ CandidatusLegionella jeonii’ sp. nov.

Published in:

Environmental Microbiology, 2004, v. 6, n. 12, p. 1252, doi. 10.1111/j.1462-2920.2004.00659.x

By:

Miey Park;
Seong Tae Yun;
Mu Soo Kim;
Jongsik Chun;
Tae In Ahn

Publication type:

Article

Comparative Genomic and Phylogenomic Analyses Clarify Relationships Within and Between Bacillus cereus and Bacillus thuringiensis : Proposal for the Recognition of Two Bacillus thuringiensis Genomovars.

Published in:

Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01978

By:

Baek, Inwoo;
Lee, Kihyun;
Goodfellow, Michael;
Chun, Jongsik

Publication type:

Article

Large-Scale Genomics Reveals the Genetic Characteristics of Seven Species and Importance of Phylogenetic Distance for Estimating Pan-Genome Size.

Published in:

Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00834

By:

Park, Sang-Cheol;
Lee, Kihyun;
Kim, Yeong Ouk;
Won, Sungho;
Chun, Jongsik

Publication type:

Article

Erratum to: UBCG2: Up-to-Date Bacterial Core Genes and Pipeline for Phylogenomic Analysis.

Published in:

2023

By:

Kim, Jihyeon;
Na, Seong-In;
Kim, Dongwook;
Chun, Jongsik

Publication type:

Correction Notice

Erratum to: Introducing EzAAI: A Pipeline for High Throughput Calculations of Prokaryotic Average Amino Acid Identity.

Published in:

2023

By:

Kim, Dongwook;
Park, Sein;
Chun, Jongsik

Publication type:

Correction Notice

UACG: Up-to-Date Archaeal Core Genes and Software for Phylogenomic Tree Reconstruction.

Published in:

Journal of Microbiology, 2023, v. 61, n. 7, p. 683, doi. 10.1007/s12275-023-00064-2

By:

Na, Seong-In;
Bailey, Michael James;
Chalita, Mauricio;
Cho, Jae Hyoung;
Chun, Jongsik

Publication type:

Article

Proposal of a health gut microbiome index based on a meta-analysis of Korean and global population datasets.

Published in:

Journal of Microbiology, 2022, v. 60, n. 5, p. 533, doi. 10.1007/s12275-022-1526-0

By:

Oh, Hyun-Seok;
Min, Uigi;
Jang, Hyejin;
Kim, Namil;
Lim, Jeongmin;
Chalita, Mauricio;
Chun, Jongsik

Publication type:

Article

UBCG2: Up-to-date bacterial core genes and pipeline for phylogenomic analysis.

Published in:

Journal of Microbiology, 2021, v. 59, n. 6, p. 609, doi. 10.1007/s12275-021-1231-4

By:

Kim, Jihyeon;
Na, Seong-In;
Kim, Dongwook;
Chun, Jongsik

Publication type:

Article

Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity.

Published in:

Journal of Microbiology, 2021, v. 59, n. 5, p. 476, doi. 10.1007/s12275-021-1154-0

By:

Kim, Dongwook;
Park, Sein;
Chun, Jongsik

Publication type:

Article

Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains.

Published in:

PLoS Biology, 2014, v. 12, n. 8, p. 1, doi. 10.1371/journal.pbio.1001920

By:

Kyrpides, Nikos C.;
Hugenholtz, Philip;
Eisen, Jonathan A.;
Woyke, Tanja;
Göker, Markus;
Parker, Charles T.;
Amann, Rudolf;
Beck, Brian J.;
Chain, Patrick S. G.;
Chun, Jongsik;
Colwell, Rita R.;
Danchin, Antoine;
Dawyndt, Peter;
Dedeurwaerdere, Tom;
DeLong, Edward F.;
Detter, John C.;
De Vos, Paul;
Donohue, Timothy J.;
Dong, Xiu-Zhu;
Ehrlich, Dusko S.

Publication type:

Article

A large-scale evaluation of algorithms to calculate average nucleotide identity.

Published in:

Antonie van Leeuwenhoek, 2017, v. 110, n. 10, p. 1281, doi. 10.1007/s10482-017-0844-4

By:

Yoon, Seok-Hwan;
Ha, Sung-min;
Lim, Jeongmin;
Kwon, Soonjae;
Chun, Jongsik

Publication type:

Article

Identification of Household Bacterial Community and Analysis of Species Shared with Human Microbiome.

Published in:

Current Microbiology, 2013, v. 67, n. 5, p. 557, doi. 10.1007/s00284-013-0401-y

By:

Jeon, Yoon-Seong;
Chun, Jongsik;
Kim, Bong-Soo

Publication type:

Article

Bacterial community of sediments from the Australian-Antarctic ridge.

Published in:

Polar Biology, 2014, v. 37, n. 4, p. 587, doi. 10.1007/s00300-014-1467-0

By:

Lee, Yung;
Hahm, Doshik;
Jung, You-Jung;
Park, Sung;
Chun, Jongsik;
Hong, Soon

Publication type:

Article

Genomic characterization of Nocardia seriolae strains isolated from diseased fish.

Published in:

MicrobiologyOpen, 2019, v. 8, n. 3, p. N.PAG, doi. 10.1002/mbo3.656

By:

Han, Hyun‐Ja;
Kwak, Min‐Jung;
Ha, Sung‐min;
Yang, Seung‐Jo;
Kim, Jin Do;
Cho, Kyoung‐hee;
Kim, Tae‐Wook;
Cho, Mi Young;
Kim, Byung‐Yong;
Jung, Sung‐Hee;
Chun, Jongsik

Publication type:

Article

Emotional well-being and gut microbiome profiles by enterotype.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-77673-z

By:

Lee, Sung-Ha;
Yoon, Seok-Hwan;
Jung, Yeonjae;
Kim, Namil;
Min, Uigi;
Chun, Jongsik;
Choi, Incheol

Publication type:

Article

Comparative analysis of the tonsillar microbiota in IgA nephropathy and other glomerular diseases.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-73035-x

By:

Park, Ji In;
Kim, Tae-Yoon;
Oh, Bumjo;
Cho, Hyunjeong;
Kim, Ji Eun;
Yoo, Seong Ho;
Lee, Jung Pyo;
Kim, Yon Su;
Chun, Jongsik;
Kim, Bong-Soo;
Lee, Hajeong

Publication type:

Article

Genome sequence of type strain of Staphylococcus aureus subsp. aureus.

Published in:

Gut Pathogens, 2014, v. 6, n. 1, p. 1, doi. 10.1186/1757-4749-6-6

By:

Bong-Soo Kim;
Hana Yi;
Jongsik Chun;
Chang-Jun Cha

Publication type:

Article

An eco-friendly treatment of tannery wastewater using bioaugmentation with a novel microbial consortium.

Published in:

Journal of Environmental Science & Health. Part A. Toxic/Hazardous Substances & Environmental Engineering, 2013, v. 48, n. 13, p. 1732, doi. 10.1080/10934529.2013.815563

By:

Kim, In-Soo;
Ekpeghere, Kaluibe;
Ha, Shin-Young;
Kim, Soo-Hyeon;
Kim, Bong-Soo;
Song, Bongkeun;
Chun, Jongsik;
Chang, Jae-Soo;
Kim, Hong-Gi;
Koh, Sung-Cheol

Publication type:

Article

Improved Metagenomic Taxonomic Profiling Using a Curated Core Gene-Based Bacterial Database Reveals Unrecognized Species in the Genus Streptococcus.

Published in:

Pathogens, 2020, v. 9, n. 3, p. 204, doi. 10.3390/pathogens9030204

By:

Chalita, Mauricio;
Ha, Sung-min;
Kim, Yeong Ouk;
Oh, Hyun-Seok;
Yoon, Seok-Hwan;
Chun, Jongsik

Publication type:

Article

VCGIDB: A Database and Web Resource for the Genomic Islands from Vibrio cholerae.

Published in:

Pathogens, 2019, v. 8, n. 4, p. 261, doi. 10.3390/pathogens8040261

By:

Hur, YoungJae;
Chalita, Mauricio;
Ha, Sung-min;
Baek, Inwoo;
Chun, Jongsik

Publication type:

Article

Changes in the Intestinal Microbiota of Patients with Inflammatory Bowel Disease with Clinical Remission during an 8-Week Infliximab Infusion Cycle.

Published in:

Microorganisms, 2020, v. 8, n. 6, p. 874, doi. 10.3390/microorganisms8060874

By:

Seong, Gyeol;
Kim, Namil;
Joung, Je-Gun;
Kim, Eun Ran;
Chang, Dong Kyung;
Chun, Jongsik;
Hong, Sung Noh;
Kim, Young-Ho

Publication type:

Article

Introducing Murine Microbiome Database (MMDB): A Curated Database with Taxonomic Profiling of the Healthy Mouse Gastrointestinal Microbiome.

Published in:

Microorganisms, 2019, v. 7, n. 11, p. 480, doi. 10.3390/microorganisms7110480

By:

Yang, Junwon;
Park, Jonghyun;
Park, Sein;
Baek, Inwoo;
Chun, Jongsik

Publication type:

Article

Compositional Changes in the Gut Microbiota of Responders and Non-responders to Probiotic Treatment Among Patients With Diarrhea-predominant Irritable Bowel Syndrome: A Post Hoc Analysis of a Randomized Clinical Trial.

Published in:

Journal of Neurogastroenterology & Motility, 2022, v. 28, n. 4, p. 642, doi. 10.5056/jnm21202

By:

Seung Yong Shin;
Sein Park;
Jung Min Moon;
Kisung Kim;
Jeong Wook Kim;
Jongsik Chun;
Tae Hee Lee;
Chang Hwan Choi

Publication type:

Article

Genomic analysis of a novel integrative conjugative element in Vibrio cholerae

Published in:

FEBS Letters, 2009, v. 583, n. 22, p. 3630, doi. 10.1016/j.febslet.2009.10.041

By:

Taviani, Elisa;
Grim, Christopher J.;
Chun, Jongsik;
Huq, Anwar;
Colwell, R.R.

Publication type:

Article

Taxonomic composition and variation in the gut microbiota of laboratory mice.

Published in:

Mammalian Genome, 2021, v. 32, n. 4, p. 297, doi. 10.1007/s00335-021-09871-7

By:

Yang, Junwon;
Chun, Jongsik

Publication type:

Article

Toll-like receptor 9 mediates oral bacteria-induced IL-8 expression in gingival epithelial cells.

Published in:

Immunology & Cell Biology, 2012, v. 90, n. 6, p. 655, doi. 10.1038/icb.2011.85

By:

Kim, Youngsook;
Jo, Ah-ram;
Jang, Da Hyun;
Cho, Yong-Joon;
Chun, Jongsik;
Min, Byung-Moo;
Choi, Youngnim

Publication type:

Article

Genomic Insight Into the Predominance of Candidate Phylum Atribacteria JS1 Lineage in Marine Sediments.

Published in:

Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02909

By:

Lee, Yung Mi;
Hwang, Kyuin;
Lee, Jae Il;
Kim, Mincheol;
Hwang, Chung Yeon;
Noh, Hyun-Ju;
Choi, Hakkyum;
Lee, Hong Kum;
Chun, Jongsik;
Hong, Soon Gyu;
Shin, Seung Chul

Publication type:

Article