Works by Jongsik Chun

Results: 77

Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains.

Published in:

PLoS Biology, 2014, v. 12, n. 8, p. 1, doi. 10.1371/journal.pbio.1001920

By:

Kyrpides, Nikos C.;
Hugenholtz, Philip;
Eisen, Jonathan A.;
Woyke, Tanja;
Göker, Markus;
Parker, Charles T.;
Amann, Rudolf;
Beck, Brian J.;
Chain, Patrick S. G.;
Chun, Jongsik;
Colwell, Rita R.;
Danchin, Antoine;
Dawyndt, Peter;
Dedeurwaerdere, Tom;
DeLong, Edward F.;
Detter, John C.;
De Vos, Paul;
Donohue, Timothy J.;
Dong, Xiu-Zhu;
Ehrlich, Dusko S.

Publication type:

Article

A large-scale evaluation of algorithms to calculate average nucleotide identity.

Published in:

Antonie van Leeuwenhoek, 2017, v. 110, n. 10, p. 1281, doi. 10.1007/s10482-017-0844-4

By:

Yoon, Seok-Hwan;
Ha, Sung-min;
Lim, Jeongmin;
Kwon, Soonjae;
Chun, Jongsik

Publication type:

Article

Lacinutrix jangbogonensis sp. nov., a psychrophilic bacterium isolated from Antarctic marine sediment and emended description of the genus Lacinutrix.

Published in:

Antonie van Leeuwenhoek, 2014, v. 106, n. 3, p. 527, doi. 10.1007/s10482-014-0221-5

By:

Lee, Yung;
Hwang, Chung;
Lee, Inae;
Jung, You-Jung;
Cho, Yirang;
Baek, Kiwoon;
Hong, Soon;
Kim, Ji-Hee;
Chun, Jongsik;
Lee, Hong

Publication type:

Article

Spatial Scaling Effects on Soil Bacterial Communities in Malaysian Tropical Forests.

Published in:

Microbial Ecology, 2014, v. 68, n. 2, p. 247, doi. 10.1007/s00248-014-0404-7

By:

Tripathi, Binu;
Lee-Cruz, Larisa;
Kim, Mincheol;
Singh, Dharmesh;
Go, Rusea;
Shukor, Noraini;
Husni, M.;
Chun, Jongsik;
Adams, Jonathan

Publication type:

Article

Tropical Soil Bacterial Communities in Malaysia: pH Dominates in the Equatorial Tropics Too.

Published in:

Microbial Ecology, 2012, v. 64, n. 2, p. 474, doi. 10.1007/s00248-012-0028-8

By:

Tripathi, Binu;
Kim, Mincheol;
Singh, Dharmesh;
Lee-Cruz, Larisa;
Lai-Hoe, Ang;
Ainuddin, A.;
Go, Rusea;
Rahim, Raha;
Husni, M.;
Chun, Jongsik;
Adams, Jonathan

Publication type:

Article

Distinctive Phyllosphere Bacterial Communities in Tropical Trees.

Published in:

Microbial Ecology, 2012, v. 63, n. 3, p. 674, doi. 10.1007/s00248-011-9953-1

By:

Kim, Mincheol;
Singh, Dharmesh;
Lai-Hoe, Ang;
Go, Rusea;
Abdul Rahim, Raha;
A.N., Ainuddin;
Chun, Jongsik;
Adams, Jonathan

Publication type:

Article

A Hump-Backed Trend in Bacterial Diversity with Elevation on Mount Fuji, Japan.

Published in:

Microbial Ecology, 2012, v. 63, n. 2, p. 429, doi. 10.1007/s00248-011-9900-1

By:

Singh, Dharmesh;
Takahashi, Koichi;
Kim, Mincheol;
Chun, Jongsik;
Adams, Jonathan

Publication type:

Article

Distinct Cutibacterium acnes subspecies defendens strains classified by multi-omics dissection alleviate inflammatory skin lesions of a rosacea-like mouse model.

Published in:

Frontiers in Microbiomes, 2024, p. 1, doi. 10.3389/frmbi.2024.1362408

By:

Kim, Hanseol;
Lee, Kihyun;
Lee, Ji Young;
Kwon, Bo Eun;
Kim, Hyun Jeong;
Park, Hyunkyung;
Kim, Taekyung;
Kwak, Jun-Gu;
Choi, Joung Eun;
Hong, Kwang Hee;
Chun, Jongsik;
Shin, Changsik

Publication type:

Article

Genome sequence of the organohalide-respiring Dehalogenimonas alkenigignens type strain (IP3-3<sup>T</sup>).

Published in:

Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0165-7

By:

Key, Trent A.;
Richmond, Dray P.;
Bowman, Kimberly S.;
Yong-Joon Cho;
Jongsik Chun;
da Costa, Milton S.;
Rainey, Fred A.;
Moe, William M.

Publication type:

Article

Complete genome sequence of Mycobacterium tuberculosis K from a Korean high school outbreak, belonging to the Beijing family.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0071-4

By:

Han, Seung;
Song, Taeksun;
Cho, Yong-Joon;
Kim, Jong-Seok;
Choi, Soo;
Bang, Hye-Eun;
Chun, Jongsik;
Bai, Gill-Han;
Cho, Sang-Nae;
Shin, Sung

Publication type:

Article

Genome sequence of the chromate-resistant bacterium Leucobacter salsicius type strain M1-8.

Published in:

Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 495, doi. 10.4056/sigs.4708537

By:

Yun, Ji-Hyun;
Cho, Yong-Joon;
Chun, Jongsik;
Hyun, Dong-Wook;
Bae, Jin-Woo

Publication type:

Article

Genome sequence of the moderately halophilic bacterium Salinicoccus carnicancri type strain Crm (= DSM 23852).

Published in:

Standards in Genomic Sciences, 2013, v. 8, n. 2, p. 255, doi. 10.4056/sigs.3967649

By:

Hyun, Dong-Wook;
Whon, Tae;
Cho, Yong-Joon;
Chun, Jongsik;
Kim, Min-Soo;
Jung, Mi-Ja;
Shin, Na-Ri;
Kim, Joon-Yong;
Kim, Pil;
Yun, Ji-Hyun;
Lee, Jina;
Oh, Sei;
Bae, Jin-Woo

Publication type:

Article

Current Status and Future Promise of the Human Microbiome.

Published in:

Pediatric Gastroenterology, Hepatology & Nutrition, 2013, v. 16, n. 2, p. 71, doi. 10.5223/pghn.2013.16.2.71

By:

Bong-Soo Kim;
Yoon-Seong Jeon;
Jongsik Chun

Publication type:

Article

VicPred: A Vibrio cholerae Genotype Prediction Tool.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.691895

By:

Lee, Imchang;
Ha, Sung-Min;
Baek, Min-gyung;
Kim, Dong Wook;
Yi, Hana;
Chun, Jongsik

Publication type:

Article

Genome insights into the pharmaceutical and plant growth promoting features of the novel species Nocardia alni sp. nov.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-021-08257-y

By:

Nouioui, Imen;
Ha, Sung-min;
Baek, Inwoo;
Chun, Jongsik;
Goodfellow, Michael

Publication type:

Article

Genomic characterization of Nocardia seriolae strains isolated from diseased fish.

Published in:

MicrobiologyOpen, 2019, v. 8, n. 3, p. N.PAG, doi. 10.1002/mbo3.656

By:

Han, Hyun‐Ja;
Kwak, Min‐Jung;
Ha, Sung‐min;
Yang, Seung‐Jo;
Kim, Jin Do;
Cho, Kyoung‐hee;
Kim, Tae‐Wook;
Cho, Mi Young;
Kim, Byung‐Yong;
Jung, Sung‐Hee;
Chun, Jongsik

Publication type:

Article

Emotional well-being and gut microbiome profiles by enterotype.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-77673-z

By:

Lee, Sung-Ha;
Yoon, Seok-Hwan;
Jung, Yeonjae;
Kim, Namil;
Min, Uigi;
Chun, Jongsik;
Choi, Incheol

Publication type:

Article

Comparative analysis of the tonsillar microbiota in IgA nephropathy and other glomerular diseases.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-73035-x

By:

Park, Ji In;
Kim, Tae-Yoon;
Oh, Bumjo;
Cho, Hyunjeong;
Kim, Ji Eun;
Yoo, Seong Ho;
Lee, Jung Pyo;
Kim, Yon Su;
Chun, Jongsik;
Kim, Bong-Soo;
Lee, Hajeong

Publication type:

Article

Evidence for several waves of global transmission in the seventh cholera pandemic.

Published in:

Nature, 2011, v. 477, n. 7365, p. 462, doi. 10.1038/nature10392

By:

Mutreja, Ankur;
Dong Wook Kim;
Thomson, Nicholas R.;
Connor, Thomas R.;
Je Hee Lee;
Kariuki, Samuel;
Croucher, Nicholas J.;
Seon Young Choi;
Harris, Simon R.;
Lebens, Michael;
Niyogi, Swapan Kumar;
Eun Jin Kim;
Ramamurthy, T.;
Chun, Jongsik;
Wood, James L. N.;
Clemens, John D.;
Czerkinsky, Cecil;
Nair, G. Balakrish;
Holmgren, Jan;
Parkhill, Julian

Publication type:

Article

An eco-friendly treatment of tannery wastewater using bioaugmentation with a novel microbial consortium.

Published in:

Journal of Environmental Science & Health. Part A. Toxic/Hazardous Substances & Environmental Engineering, 2013, v. 48, n. 13, p. 1732, doi. 10.1080/10934529.2013.815563

By:

Kim, In-Soo;
Ekpeghere, Kaluibe;
Ha, Shin-Young;
Kim, Soo-Hyeon;
Kim, Bong-Soo;
Song, Bongkeun;
Chun, Jongsik;
Chang, Jae-Soo;
Kim, Hong-Gi;
Koh, Sung-Cheol

Publication type:

Article

Altered gut microbiome in convalescent patients with coronavirus disease 2019.

Published in:

Frontiers in Cellular & Infection Microbiology, 2024, p. 1, doi. 10.3389/fcimb.2024.1455295

By:

Lee, Kyoung Hwa;
Kim, Yeong Ouk;
Dho, So Hee;
Yong, Jen J. H.;
Oh, Hyun-Seok;
Lee, Je Hee;
Yang, Seung-Jo;
Cha, Inseong;
Chun, Jongsik;
Lee, Eun Hwa;
Jeong, Su Jin;
Woo, Wonjin;
Choi, Jae-Phil;
Han, Sang Hoon;
Choi, Gloria B.;
Huh, Jun R.;
Kim, Lark Kyun;
Song, Young Goo

Publication type:

Article

Comparative genomic analysis reveals evidence of two novel Vibrio species closely related to V. cholerae.

Published in:

BMC Microbiology, 2010, v. 10, p. 154, doi. 10.1186/1471-2180-10-154

By:

Haley, Bradd J.;
Grim, Christopher J.;
Hasan, Nur A.;
Seon-Young Choi;
Jongsik Chun;
Brettin, Thomas S.;
Bruce, David C.;
Challacombe, Jean F.;
Detter, J. Chris;
Han, Cliff S.;
Huq, Anwar;
Colwell, Rita R.

Publication type:

Article

The analysis of oral microbial communities of wild-type and toll-like receptor 2-deficient mice using a 454 GS FLX Titanium pyrosequencer.

Published in:

BMC Microbiology, 2010, v. 10, p. 101, doi. 10.1186/1471-2180-10-101

By:

Jongsik Chun;
Kim, Kap Y.;
Jae-Hak Lee;
Youngnim Choi

Publication type:

Article

Profiling bacterial community in upper respiratory tracts.

Published in:

BMC Infectious Diseases, 2014, v. 14, n. 1, p. 583, doi. 10.1186/s12879-014-0583-3

By:

Hana Yi;
Dongeun Yong;
Kyungwon Lee;
Yong-Joon Cho;
Jongsik Chun

Publication type:

Article

Profiling bacterial community in upper respiratory tracts.

Published in:

2014

By:

Yi, Hana;
Yong, Dongeun;
Lee, Kyungwon;
Cho, Yong-Joon;
Chun, Jongsik

Publication type:

journal article

Characterization of Gut Microbiome in Korean Patients with Metabolic Associated Fatty Liver Disease.

Published in:

Nutrients, 2021, v. 13, n. 3, p. 1013, doi. 10.3390/nu13031013

By:

Oh, Joo Hyun;
Lee, Je Hee;
Cho, Min Seok;
Kim, Hyeree;
Chun, Jongsik;
Lee, Joon Hyeok;
Yoon, Yeup;
Kang, Wonseok;
Laudes, Matthias

Publication type:

Article

The pre-seventh pandemic Vibrio cholerae BX 330286 El Tor genome: evidence for the environment as a genome reservoir.

Published in:

Environmental Microbiology Reports, 2010, v. 2, n. 1, p. 208, doi. 10.1111/j.1758-2229.2010.00141.x

By:

Haley, Bradd J.;
Grim, Christopher J.;
Hasan, Nur A.;
Taviani, Elisa;
Chun, Jongsik;
Brettin, Thomas S.;
Bruce, David C.;
Challacombe, Jean F.;
Detter, J. Chris;
Han, Cliff S.;
Huq, Anwar;
Nair, G. Balakrish;
Colwell, Rita R.

Publication type:

Article

Genome sequence of type strain of Staphylococcus aureus subsp. aureus.

Published in:

Gut Pathogens, 2014, v. 6, n. 1, p. 1, doi. 10.1186/1757-4749-6-6

By:

Bong-Soo Kim;
Hana Yi;
Jongsik Chun;
Chang-Jun Cha

Publication type:

Article

Phylogeny Trumps Chemotaxonomy: A Case Study Involving Turicella otitidis.

Published in:

Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.00834

By:

Baek, Inwoo;
Kim, Mincheol;
Lee, Imchang;
Na, Seong-In;
Goodfellow, Michael;
Chun, Jongsik

Publication type:

Article

Compositional Changes in the Gut Microbiota of Responders and Non-responders to Probiotic Treatment Among Patients With Diarrhea-predominant Irritable Bowel Syndrome: A Post Hoc Analysis of a Randomized Clinical Trial.

Published in:

Journal of Neurogastroenterology & Motility, 2022, v. 28, n. 4, p. 642, doi. 10.5056/jnm21202

By:

Seung Yong Shin;
Sein Park;
Jung Min Moon;
Kisung Kim;
Jeong Wook Kim;
Jongsik Chun;
Tae Hee Lee;
Chang Hwan Choi

Publication type:

Article

Comparison of a culture-based and a PCR-based methods for estimating bacterial abundance on eggshells, with comments on statistical analyses.

Published in:

Journal of Field Ornithology, 2013, v. 84, n. 3, p. 304, doi. 10.1111/jofo.12031

By:

Lee, Won Young;
Lee, Ki‐hyun;
Chun, Jongsik;
Choe, Jae Chun;
Jablonski, Piotr G.;
Lee, Sang‐im

Publication type:

Article

jPHYDIT: a JAVA-based integrated environment for molecular phylogeny of ribosomal RNA sequences.

Published in:

Bioinformatics, 2005, v. 21, n. 14, p. 3171, doi. 10.1093/bioinformatics/bti463

By:

Yoon-Seong Jeon;
Hwanwon Chung;
Sunyoung Park;
Inae Hur;
Jae-Hak Lee;
Jongsik Chun

Publication type:

Article

Improved Metagenomic Taxonomic Profiling Using a Curated Core Gene-Based Bacterial Database Reveals Unrecognized Species in the Genus Streptococcus.

Published in:

Pathogens, 2020, v. 9, n. 3, p. 204, doi. 10.3390/pathogens9030204

By:

Chalita, Mauricio;
Ha, Sung-min;
Kim, Yeong Ouk;
Oh, Hyun-Seok;
Yoon, Seok-Hwan;
Chun, Jongsik

Publication type:

Article

VCGIDB: A Database and Web Resource for the Genomic Islands from Vibrio cholerae.

Published in:

Pathogens, 2019, v. 8, n. 4, p. 261, doi. 10.3390/pathogens8040261

By:

Hur, YoungJae;
Chalita, Mauricio;
Ha, Sung-min;
Baek, Inwoo;
Chun, Jongsik

Publication type:

Article

Toll-like receptor 9 mediates oral bacteria-induced IL-8 expression in gingival epithelial cells.

Published in:

Immunology & Cell Biology, 2012, v. 90, n. 6, p. 655, doi. 10.1038/icb.2011.85

By:

Kim, Youngsook;
Jo, Ah-ram;
Jang, Da Hyun;
Cho, Yong-Joon;
Chun, Jongsik;
Min, Byung-Moo;
Choi, Youngnim

Publication type:

Article

The Effect of Probiotics on Gut Microbiota during the Helicobacter pylori Eradication: Randomized Controlled Trial.

Published in:

Helicobacter, 2016, v. 21, n. 3, p. 165, doi. 10.1111/hel.12270

By:

Oh, Bumjo;
Kim, Bong‐Soo;
Kim, Ji Won;
Kim, Jong Seung;
Koh, Seong‐Joon;
Kim, Byeong Gwan;
Lee, Kook Lae;
Chun, Jongsik

Publication type:

Article

Phylogenetic characterization ofLegionella-like endosymbiotic X-bacteria inAmoeba proteus: a proposal for‘ CandidatusLegionella jeonii’ sp. nov.

Published in:

Environmental Microbiology, 2004, v. 6, n. 12, p. 1252, doi. 10.1111/j.1462-2920.2004.00659.x

By:

Miey Park;
Seong Tae Yun;
Mu Soo Kim;
Jongsik Chun;
Tae In Ahn

Publication type:

Article

Stool Microbiota Changes and Recovery in Patients with Coronavirus Disease 2019.

Published in:

Infection & Chemotherapy, 2022, v. 54, p. 350

By:

Kyoung Hwa Lee;
Yeong Ouk Kim;
So Hee Dho;
Hyun-Seok Oh;
Je Hee Lee;
Seung-Jo Yang;
Inseong Cha;
Jongsik Chun;
Eun Hwa Lee;
Sang Hoon Han;
Lark Kyun Kim;
Huh, Jun R.;
Young Goo Song

Publication type:

Article

Application of the Whole Genome-Based Bacterial Identification System, TrueBac ID, Using Clinical Isolates That Were Not Identified With Three Matrix-Assisted Laser Desorption/Ionization Time-of-Flight Mass Spectrometry (MALDI-TOF MS) Systems.

Published in:

Annals of Laboratory Medicine, 2019, v. 39, n. 6, p. 530, doi. 10.3343/alm.2019.39.6.530

By:

Sung-Min Ha;
Chang Ki Kim;
Juhye Roh;
Jung-Hyun Byun;
Seung-Jo Yang;
Seon-Bin Choi;
Jongsik Chun;
Dongeun Yong

Publication type:

Article

Comparative Genomic and Phylogenomic Analyses Clarify Relationships Within and Between Bacillus cereus and Bacillus thuringiensis : Proposal for the Recognition of Two Bacillus thuringiensis Genomovars.

Published in:

Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01978

By:

Baek, Inwoo;
Lee, Kihyun;
Goodfellow, Michael;
Chun, Jongsik

Publication type:

Article

Large-Scale Genomics Reveals the Genetic Characteristics of Seven Species and Importance of Phylogenetic Distance for Estimating Pan-Genome Size.

Published in:

Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00834

By:

Park, Sang-Cheol;
Lee, Kihyun;
Kim, Yeong Ouk;
Won, Sungho;
Chun, Jongsik

Publication type:

Article

Genomic Insight Into the Predominance of Candidate Phylum Atribacteria JS1 Lineage in Marine Sediments.

Published in:

Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02909

By:

Lee, Yung Mi;
Hwang, Kyuin;
Lee, Jae Il;
Kim, Mincheol;
Hwang, Chung Yeon;
Noh, Hyun-Ju;
Choi, Hakkyum;
Lee, Hong Kum;
Chun, Jongsik;
Hong, Soon Gyu;
Shin, Seung Chul

Publication type:

Article

UFCG: database of universal fungal core genes and pipeline for genome-wide phylogenetic analysis of fungi.

Published in:

Nucleic Acids Research, 2023, v. 51, n. D1, p. D777, doi. 10.1093/nar/gkac894

By:

Kim, Dongwook;
Gilchrist, Cameron L M;
Chun, Jongsik;
Steinegger, Martin

Publication type:

Article

AMDB: a database of animal gut microbial communities with manually curated metadata.

Published in:

Nucleic Acids Research, 2022, v. 50, n. D1, p. D729, doi. 10.1093/nar/gkab1009

By:

Yang, Junwon;
Park, Jonghyun;
Jung, Yeonjae;
Chun, Jongsik

Publication type:

Article

Duplex-specific nuclease efficiently removes rRNA for prokaryotic RNA-seq.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 20, p. e140, doi. 10.1093/nar/gkr617

By:

Yi, Hana;
Cho, Yong-Joon;
Won, Sungho;
Lee, Jong-Eun;
Jin Yu, Hyung;
Kim, Sujin;
Schroth, Gary P.;
Luo, Shujun;
Chun, Jongsik

Publication type:

Article

A single gene of a commensal microbe affects host susceptibility to enteric infection.

Published in:

Nature Communications, 2016, v. 7, n. 5, p. 11606, doi. 10.1038/ncomms11606

By:

Yoon, Mi Young;
Min, Kyung Bae;
Lee, Kang-Mu;
Yoon, Yujin;
Kim, Yaeseul;
Oh, Young Taek;
Lee, Keehoon;
Chun, Jongsik;
Kim, Byung-Yong;
Yoon, Seok-Hwan;
Lee, Insuk;
Kim, Chan Yeong;
Yoon, Sang Sun

Publication type:

Article

Telomere maintenance through recruitment of internal genomic regions.

Published in:

Nature Communications, 2015, v. 6, n. 9, p. 8189, doi. 10.1038/ncomms9189

By:

Seo, Beomseok;
Kim, Chuna;
Hills, Mark;
Sung, Sanghyun;
Kim, Hyesook;
Kim, Eunkyeong;
Lim, Daisy S.;
Oh, Hyun-Seok;
Choi, Rachael Mi Jung;
Chun, Jongsik;
Shim, Jaegal;
Lee, Junho

Publication type:

Article

Changes in the Intestinal Microbiota of Patients with Inflammatory Bowel Disease with Clinical Remission during an 8-Week Infliximab Infusion Cycle.

Published in:

Microorganisms, 2020, v. 8, n. 6, p. 874, doi. 10.3390/microorganisms8060874

By:

Seong, Gyeol;
Kim, Namil;
Joung, Je-Gun;
Kim, Eun Ran;
Chang, Dong Kyung;
Chun, Jongsik;
Hong, Sung Noh;
Kim, Young-Ho

Publication type:

Article

Introducing Murine Microbiome Database (MMDB): A Curated Database with Taxonomic Profiling of the Healthy Mouse Gastrointestinal Microbiome.

Published in:

Microorganisms, 2019, v. 7, n. 11, p. 480, doi. 10.3390/microorganisms7110480

By:

Yang, Junwon;
Park, Jonghyun;
Park, Sein;
Baek, Inwoo;
Chun, Jongsik

Publication type:

Article

Metagenomic Insights into the Bioaerosols in the Indoor and Outdoor Environments of Childcare Facilities.

Published in:

PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0126960

By:

Shin, Su-Kyoung;
Kim, Jinman;
Ha, Sung-min;
Oh, Hyun-Seok;
Chun, Jongsik;
Sohn, Jongryeul;
Yi, Hana

Publication type:

Article