Works by Joly, Simon

Results: 49

Temperate Forests Dominated by Arbuscular or Ectomycorrhizal Fungi Are Characterized by Strong Shifts from Saprotrophic to Mycorrhizal Fungi with Increasing Soil Depth.

Published in:

Microbial Ecology, 2021, v. 82, n. 2, p. 377, doi. 10.1007/s00248-020-01540-7

By:

Carteron, Alexis;
Beigas, Marie;
Joly, Simon;
Turner, Benjamin L.;
Laliberté, Etienne

Publication type:

Article

Fast Diploidization in Close Mesopolyploid Relatives of Arabidopsis.

Published in:

Plant Cell, 2010, v. 22, n. 7, p. 2277, doi. 10.1105/tpc.110.074526

By:

Mandáková, Terezie;
Joly, Simon;
Krzywinski, Martin;
Mummenhoff, Klaus;
Lysak, Martin A.

Publication type:

Article

Explaining naturalization and invasiveness: new insights from historical ornamental plant catalogs.

Published in:

Ecology & Evolution (20457758), 2016, v. 6, n. 20, p. 7188, doi. 10.1002/ece3.2471

By:

Lavoie, Claude;
Joly, Simon;
Bergeron, Alexandre;
Guay, Geneviève;
Groeneveld, Elisabeth

Publication type:

Article

Explaining forest productivity using tree functional traits and phylogenetic information: two sides of the same coin over evolutionary scale?

Published in:

Ecology & Evolution (20457758), 2015, v. 5, n. 9, p. 1774, doi. 10.1002/ece3.1456

By:

Paquette, Alain;
Joly, Simon;
Messier, Christian

Publication type:

Article

Evolution of intraspecific floral variation in a generalist–specialist pollination system.

Published in:

Journal of Evolutionary Biology, 2024, v. 37, n. 12, p. 1474, doi. 10.1093/jeb/voae028

By:

Leménager, Marion;
Clark, John L;
Martén-Rodríguez, Silvana;
Almarales-Castro, Abel;
Joly, Simon

Publication type:

Article

Variation in flower size and shape of Impatiens capensis is correlated with urbanization in Montreal, Canada.

Published in:

Ecology & Evolution (20457758), 2023, v. 13, n. 12, p. 1, doi. 10.1002/ece3.10826

By:

Faure, Julie;
Volz, Valentine;
Joly, Simon

Publication type:

Article

Chromosome size matters: genome evolution in the cyperid clade.

Published in:

Annals of Botany, 2022, v. 130, n. 7, p. 999, doi. 10.1093/aob/mcac136

By:

Elliott, Tammy L;
Zedek, František;
Barrett, Russell L;
Bruhl, Jeremy J;
Escudero, Marcial;
Hroudová, Zdenka;
Joly, Simon;
Larridon, Isabel;
Luceño, Modesto;
Márquez-Corro, José Ignacio;
Martín-Bravo, Santiago;
Muasya, A Muthama;
Šmarda, Petr;
Thomas, William Wayt;
Wilson, Karen L;
Bureš, Petr

Publication type:

Article

Phylogeny and biogeography of wild roses with specific attention to polyploids.

Published in:

Annals of Botany, 2015, v. 115, n. 2, p. 275

By:

Fougère-Danezan, Marie;
Joly, Simon;
Bruneau, Anne;
Gao, Xin-Fen;
Zhang, Li-Bing

Publication type:

Article

The Evolutionary History of the Arabidopsis arenosa Complex: Diverse Tetraploids Mask the Western Carpathian Center of Species and Genetic Diversity.

Published in:

PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0042691

By:

Schmickl, Roswitha;
Paule, Juraj;
Klein, Johannes;
Marhold, Karol;
Koch, Marcus A.;
Joly, Simon

Publication type:

Article

Species Radiation by Niche Shifts in New Zealand's Rockcresses (Pachycladon, Brassicaceae).

Published in:

Systematic Biology, 2014, v. 63, n. 2, p. 192, doi. 10.1093/sysbio/syt104

By:

Joly, Simon;
Heenan, Peter B.;
Lockhart, Peter J.

Publication type:

Article

Measuring Branch Support in Species Trees Obtained by Gene Tree Parsimony.

Published in:

Systematic Biology, 2009, v. 58, n. 1, p. 100, doi. 10.1093/sysbio/syp013

By:

JOLY, SIMON;
BRUNEAU, ANNE

Publication type:

Article

Haplotype Networks Can Be Misleading in the Presence of Missing Data.

Published in:

Systematic Biology, 2007, v. 56, n. 5, p. 857, doi. 10.1080/10635150701633153

By:

Joly, Simon;
Stevens, Mark I.;
Van Vuuren, Bettine Jansen

Publication type:

Article

Incorporating Allelic Variation for Reconstructing the Evolutionary History of Organisms from Multiple Genes: An Example from Rosa in North America.

Published in:

Systematic Biology, 2006, v. 55, n. 4, p. 623, doi. 10.1080/10635150600863109

By:

Joly, Simon;
Bruneau, Anne

Publication type:

Article

Species delimitation in the Caribbean Gesneria viridiflora complex (Gesneriaceae) reveals unsuspected endemism.

Published in:

Taxon, 2017, v. 66, n. 5, p. 1171, doi. 10.12705/665.10

By:

Lambert, François;
Clark, John L.;
Joly, Simon

Publication type:

Article

Studying flowers in 3D using photogrammetry.

Published in:

New Phytologist, 2023, v. 237, n. 5, p. 1922, doi. 10.1111/nph.18553

By:

Leménager, Marion;
Burkiewicz, Jérôme;
Schoen, Daniel J.;
Joly, Simon

Publication type:

Article

Heliotropism in Trillium grandiflorum provides increased reproductive success.

Published in:

Botany, 2022, v. 100, n. 8, p. 643, doi. 10.1139/cjb-2021-0205

By:

Gradito, Maryane;
Fauteux, Catherine;
Joly, Simon

Publication type:

Article

Genetic structure of the American ginseng ( Panax quinquefolius L.) in Eastern Canada using reduced-representation high-throughput sequencing.

Published in:

Botany, 2017, v. 95, n. 4, p. 429, doi. 10.1139/cjb-2016-0144

By:

Joly, Simon;
Archambault, Annie;
Pellerin, Stéphanie;
Nault, Andrée

Publication type:

Article

Soil contamination alters the willow root and rhizosphere metatranscriptome and the root-rhizosphere interactome.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2018, v. 12, n. 3, p. 869, doi. 10.1038/s41396-017-0018-4

By:

Yergeau, Etienne;
Tremblay, Julien;
Joly, Simon;
Labrecque, Michel;
Maynard, Christine;
Pitre, Frederic E.;
St-Arnaud, Marc;
Greer, Charles W.

Publication type:

Article

Greater pollination generalization is not associated with reduced constraints on corolla shape in Antillean plants.

Published in:

Evolution, 2018, v. 72, n. 2, p. 244, doi. 10.1111/evo.13410

By:

Joly, Simon;
Lambert, François;
Alexandre, Hermine;
Clavel, Julien;
Léveillé‐Bourret, Étienne;
Clark, John L.

Publication type:

Article

MIGRATION RATES, FREQUENCY-DEPENDENT SELECTION AND THE SELF-INCOMPATIBILITY LOCUS IN LEAVENWORTHIA (BRASSICACEAE).

Published in:

Evolution, 2011, v. 65, n. 8, p. 2357, doi. 10.1111/j.1558-5646.2011.01300.x

By:

Joly, Simon;
Schoen, Daniel J.

Publication type:

Article

DOES MATE LIMITATION IN SELF-INCOMPATIBLE SPECIES PROMOTE THE EVOLUTION OF SELFING? THE CASE OF LEAVENWORTHIA ALABAMICA.

Published in:

Evolution, 2010, v. 64, n. 6, p. 1657, doi. 10.1111/j.1558-5646.2009.00925.x

By:

Busch, Jeremiah W.;
Joly, Simon;
Schoen, Daniel J.

Publication type:

Article

Transcriptomic Response of Purple Willow (Salix purpurea) to Arsenic Stress.

Published in:

Frontiers in Plant Science, 2017, p. 1, doi. 10.3389/fpls.2017.01115

By:

Yanitch, Aymeric;
Brereton, Nicholas J. B.;
Gonzalez, Emmanuel;
Labrecque, Michel;
Joly, Simon;
Pitre, Frederic E.

Publication type:

Article

Population isolation shapes plant genetics, phenotype and germination in naturally patchy ecosystems.

Published in:

Journal of Plant Ecology, 2017, v. 10, n. 4, p. 649, doi. 10.1093/jpe/rtw071

By:

De Vriendt, Laurent;
Lemay, Marc-André;
Jean, Martine;
Renaut, Sébastien;
Pellerin, Stéphanie;
Joly, Simon;
Belzile, François;
Poulin, Monique

Publication type:

Article

Molecular markers indicate that the narrow Québec endemics Rosa rousseauiorum and Rosa williamsii are synonymous with the widespread Rosa blanda.

Published in:

Canadian Journal of Botany, 2005, v. 83, n. 4, p. 386, doi. 10.1139/B05-012

By:

Bruneau, Anne;
Joly, Simon;
Starr, Julian R.;
Drouin, Josée-Nadia

Publication type:

Article

Reversing extinction trends: new uses of (old) herbarium specimens to accelerate conservation action on threatened species.

Published in:

New Phytologist, 2021, v. 230, n. 2, p. 433, doi. 10.1111/nph.17133

By:

Albani Rocchetti, Giulia;
Armstrong, Chelsey Geralda;
Abeli, Thomas;
Orsenigo, Simone;
Jasper, Caroline;
Joly, Simon;
Bruneau, Anne;
Zytaruk, Maria;
Vamosi, Jana C.

Publication type:

Article

An evaluation of alternative explanations for widespread cytonuclear discordance in annual sunflowers (Helianthus).

Published in:

New Phytologist, 2019, v. 221, n. 1, p. 515, doi. 10.1111/nph.15386

By:

Lee‐Yaw, Julie A.;
Grassa, Christopher J.;
Joly, Simon;
Andrew, Rose L.;
Rieseberg, Loren H.

Publication type:

Article

Angular Quasi-Phase-Matching in Periodically Poled Uniaxial and Biaxial Crystals.

Published in:

Crystals (2073-4352), 2022, v. 12, n. 7, p. N.PAG, doi. 10.3390/cryst12070979

By:

Petit, Yannick;
Peña, Alexandra;
Joly, Simon;
Lu, Dazhi;
Segonds, Patricia;
Boulanger, Benoît

Publication type:

Article

Global dispersal and diversification of the genus Schoenus (Cyperaceae) from the Western Australian biodiversity hotspot.

Published in:

Journal of Systematics & Evolution, 2021, v. 59, n. 4, p. 791, doi. 10.1111/jse.12742

By:

Elliott, Tammy L.;
Mazijk, Ruan;
Barrett, Russell L.;
Bruhl, Jeremy J.;
Joly, Simon;
Muthaphuli, Ngalirendwe;
Wilson, Karen L.;
Muasya, A. Muthama

Publication type:

Article

Judge it by its shape: a pollinator‐blind approach reveals convergence in petal shape and infers pollination modes in the genus Erythrina.

Published in:

American Journal of Botany, 2021, v. 108, n. 9, p. 1716, doi. 10.1002/ajb2.1735

By:

Bilbao, Gonzalo;
Bruneau, Anne;
Joly, Simon

Publication type:

Article

POLYPLOID AND HYBRID EVOLUTION IN ROSES EAST OF THE ROCKY MOUNTAINS.

Published in:

American Journal of Botany, 2006, v. 93, n. 3, p. 412, doi. 10.3732/ajb.93.3.412

By:

Joly, Simon;
Starr, Julian R.;
Lewis, Walter H.;
Bruneau, Anne

Publication type:

Article

A multi‐platform package for the analysis of intra‐ and interspecific trait evolution.

Published in:

Methods in Ecology & Evolution, 2020, v. 11, n. 11, p. 1439, doi. 10.1111/2041-210X.13458

By:

Gaboriau, Théo;
Mendes, Fábio K.;
Joly, Simon;
Silvestro, Daniele;
Salamin, Nicolas;
Price, Samantha

Publication type:

Article

On the importance of accounting for intraspecific genomic relatedness in multi‐species studies.

Published in:

Methods in Ecology & Evolution, 2019, v. 10, n. 7, p. 994, doi. 10.1111/2041-210X.13184

By:

Joly, Simon;
Flynn, Dan F. B.;
Wolkovich, Elizabeth M.;
Blomberg, Simone

Publication type:

Article

Flexible methods for estimating genetic distances from single nucleotide polymorphisms.

Published in:

Methods in Ecology & Evolution, 2015, v. 6, n. 8, p. 938, doi. 10.1111/2041-210X.12343

By:

Joly, Simon;
Bryant, David;
Lockhart, Peter J.;
Bunce, Michael

Publication type:

Article

Layer-Inversion Zones in Angular Distributions of Luminescence and Absorption Properties in Biaxial Crystals.

Published in:

Materials (1996-1944), 2010, v. 3, n. 4, p. 2474, doi. 10.3390/ma3042474

By:

Petit, Yannick;
Segonds, Patricia;
Joly, Simon;
Boulanger, Benoît

Publication type:

Article

Impact of RNA-seq attributes on false positive rates in differential expression analysis of de novo assembled transcriptomes.

Published in:

BMC Research Notes, 2013, v. 6, n. 1, p. 1, doi. 10.1186/1756-0500-6-503

By:

González, Emmanuel;
Joly, Simon

Publication type:

Article

Meta-transcriptomics indicates biotic cross-tolerance in willow trees cultivated on petroleum hydrocarbon contaminated soil.

Published in:

BMC Plant Biology, 2015, v. 15, p. 1, doi. 10.1186/s12870-015-0636-9

By:

Gonzalez, Emmanuel;
Brereton, Nicholas J. B.;
Marleau, Julie;
Nissim, Werther Guidi;
Labrecque, Michel;
Pitre, Frederic E.;
Joly, Simon

Publication type:

Article

Evolution and Phylogenetic Diversity of Yam Species (Dioscorea spp.): Implication for Conservation and Agricultural Practices.

Published in:

PLoS ONE, 2015, v. 10, n. 12, p. 1, doi. 10.1371/journal.pone.0145364

By:

Ngo Ngwe, Marie Florence Sandrine;
Omokolo, Denis Ndoumou;
Joly, Simon

Publication type:

Article

Evolutionary Dynamics and Preferential Expression of Homeologous 18S-5.8S-26S Nuclear Ribosomal Genes in Natural and Artificial Glycine Allopolyploids.

Published in:

Molecular Biology & Evolution, 2004, v. 21, n. 7, p. 1409, doi. 10.1093/molbev/msh140

By:

Joly, Simon;
Rauscher, Jason T.;
Sherman-Broyles, Susan L.;
Brown, A. H. D.;
Doyle, Jeff J.

Publication type:

Article

A four-year phytoremediation trial to decontaminate soil polluted by wood preservatives: phytoextraction of arsenic, chromium, copper, dioxins and furans.

Published in:

International Journal of Phytoremediation, 2020, v. 22, n. 14, p. 1505, doi. 10.1080/15226514.2020.1785387

By:

Yanitch, Aymeric;
Kadri, Hafssa;
Frenette-Dussault, Cédric;
Joly, Simon;
Pitre, Frederic E.;
Labrecque, Michel

Publication type:

Article

Symbiotic association between Salix purpurea L. and Rhizophagus irregularis: modulation of plant responses under copper stress.

Published in:

Tree Physiology, 2016, v. 36, n. 4, p. 407, doi. 10.1093/treephys/tpv119

By:

Almeida-Rodríguez, Adriana M.;
Gómes, Marcelo P.;
Loubert-Hudon, Audrey;
Joly, Simon;
Labrecque, Michel

Publication type:

Article

EVOLUTION OF TRIPLOIDY IN APIOS AMERICANA (LEGUMINOSAE) REVEALED BY GENEALOGICAL ANALYSIS OF THE HISTONE H3-D GENE.

Published in:

Evolution, 2004, v. 58, n. 2, p. 284, doi. 10.1554/03-149

By:

Joly, Simon;
Bruneau, Anne

Publication type:

Article

Recent advances in monoclinic crystal optics.

Published in:

Laser & Photonics Reviews, 2013, v. 7, n. 6, p. 920, doi. 10.1002/lpor.201200078

By:

Petit, Yannick;
Joly, Simon;
Segonds, Patricia;
Boulanger, Benoît

Publication type:

Article

Ecology in the age of DNA barcoding: the resource, the promise and the challenges ahead.

Published in:

Molecular Ecology Resources, 2014, v. 14, n. 2, p. 221, doi. 10.1111/1755-0998.12173

By:

Joly, Simon;
Davies, T. Jonathan;
Archambault, Annie;
Bruneau, Anne;
Derry, Alison;
Kembel, Steven W.;
Peres ‐ Neto, Pedro;
Vamosi, Jana;
Wheeler, Terry A.

Publication type:

Article

JML: testing hybridization from species trees.

Published in:

Molecular Ecology Resources, 2012, v. 12, n. 1, p. 179, doi. 10.1111/j.1755-0998.2011.03065.x

By:

JOLY, SIMON

Publication type:

Article

Testing candidate genes linked to corolla shape variation of a pollinator shift in Rhytidophyllum (Gesneriaceae).

Published in:

PLoS ONE, 2022, v. 17, n. 7, p. 1, doi. 10.1371/journal.pone.0267540

By:

Poulin, Valérie;
Amesefe, Delase;
Gonzalez, Emmanuel;
Alexandre, Hermine;
Joly, Simon

Publication type:

Article

Demographic Signatures Accompanying the Evolution of Selfing in Leavenworthia alabamica.

Published in:

Molecular Biology & Evolution, 2011, v. 28, n. 5, p. 1717, doi. 10.1093/molbev/msq352

By:

Busch, Jeremiah W.;
Joly, Simon;
Schoen, Daniel J.

Publication type:

Article

Phylogeny of Dinoflagellate Plastid Genes Recently Transferred to the Nucleus Supports a Common Ancestry with Red Algal Plastid Genes.

Published in:

Journal of Molecular Evolution, 2008, v. 66, n. 2, p. 175, doi. 10.1007/s00239-008-9070-z

By:

Yunling Wang;
Joly, Simon;
Morse, David

Publication type:

Article

Regional plant abundance explains patterns of host use by pollen‐specialist bees in eastern North America.

Published in:

Ecology, 2023, v. 104, n. 8, p. 1, doi. 10.1002/ecy.4122

By:

Smith, Colleen;
Joly, Simon;
Antoine, Cécile;
Hyjazie, Batoule;
Forrest, Jessica R. K.

Publication type:

Article

Comparative Transcriptomic Approaches Exploring Contamination Stress Tolerance in Salix sp. Reveal the Importance for a Metaorganismal de Novo Assembly Approach for Nonmodel Plants.

Published in:

Plant Physiology, 2016, v. 171, n. 1, p. 3, doi. 10.1104/pp.16.00090

By:

Brereton, Nicholas J. B.;
Gonzalez, Emmanuel;
Marleau, Julie;
Nissim, Werther Guidi;
Labrecque, Michel;
Joly, Simon;
Pitre, Frederic E.

Publication type:

Article