Works by Jojic, Vladimir

Results: 19

Single-cell transcriptomics of the naked mole-rat reveals unexpected features of mammalian immunity.

Published in:

PLoS Biology, 2019, v. 17, n. 11, p. 1, doi. 10.1371/journal.pbio.3000528

By:

Hilton, Hugo G.;
Rubinstein, Nimrod D.;
Janki, Peter;
Ireland, Andrea T.;
Bernstein, Nicholas;
Fong, Nicole L.;
Wright, Kevin M.;
Smith, Megan;
Finkle, David;
Martin-McNulty, Baby;
Roy, Margaret;
Imai, Denise M.;
Jojic, Vladimir;
Buffenstein, Rochelle

Publication type:

Article

Efficient approximations for learning phylogenetic HMM models from data.

Published in:

Bioinformatics, 2004, v. 20, n. suppl_1, p. i161, doi. 10.1093/bioinformatics/bth917

By:

Jojic, Vladimir;
Jojic, Nebojsa;
Meek, Chris;
Geiger, Dan;
Siepel, Adam;
Haussler, David;
Heckerman, D.

Publication type:

Article

Efficient approximations for learning phylogenetic HMM models from data.

Published in:

Bioinformatics, 2004, v. 20, p. i161, doi. 10.1093/bioinformatics/bth917

By:

Jojic, Vladimir;
Jojic, Nebojsa;
Meek, Chris;
Geiger, Dan;
Siepel, Adam;
Haussler, David;
Heckerman, D.

Publication type:

Article

Molecular definition of the identity and activation of natural killer cells.

Published in:

Nature Immunology, 2012, v. 13, n. 10, p. 1000, doi. 10.1038/ni.2395

By:

Bezman, Natalie A;
Kim, Charles C;
Sun, Joseph C;
Min-Oo, Gundula;
Hendricks, Deborah W;
Kamimura, Yosuke;
Best, J Adam;
Goldrath, Ananda W;
Lanier, Lewis L;
Gautier, Emmanuel L;
Jakubzick, Claudia;
Randolph, Gwendalyn J;
Best, Adam J;
Knell, Jamie;
Goldrath, Ananda;
Miller, Jennifer;
Brown, Brian;
Merad, Miriam;
Jojic, Vladimir;
Koller, Daphne

Publication type:

Article

Deciphering the transcriptional network of the dendritic cell lineage.

Published in:

Nature Immunology, 2012, v. 13, n. 9, p. 888, doi. 10.1038/ni.2370

By:

Miller, Jennifer C;
Brown, Brian D;
Shay, Tal;
Gautier, Emmanuel L;
Jojic, Vladimir;
Cohain, Ariella;
Pandey, Gaurav;
Leboeuf, Marylene;
Elpek, Kutlu G;
Helft, Julie;
Hashimoto, Daigo;
Chow, Andrew;
Price, Jeremy;
Greter, Melanie;
Bogunovic, Milena;
Bellemare-Pelletier, Angelique;
Frenette, Paul S;
Randolph, Gwendalyn J;
Turley, Shannon J;
Merad, Miriam

Publication type:

Article

Automated, high-dimensional evaluation of physiological aging and resilience in outbred mice.

Published in:

eLife, 2022, p. 1, doi. 10.7554/eLife.72664

By:

Zhenghao Chen;
Raj, Anil;
Prateek, G. V.;
Di Francesco, Andrea;
Liu, Justin;
Keyes, Brice E.;
Kolumam, Ganesh;
Jojic, Vladimir;
Freund, Adam

Publication type:

Article

Apoptosis and other immune biomarkers predict influenza vaccine responsiveness.

Published in:

Molecular Systems Biology, 2014, v. 10, n. 9, p. n/a, doi. 10.15252/msb.20145632

By:

Furman, David;
Jojic, Vladimir;
Kidd, Brian;
Shen‐Orr, Shai;
Price, Jordan;
Jarrell, Justin;
Tse, Tiffany;
Huang, Huang;
Lund, Peder;
Maecker, Holden T;
Utz, Paul J;
Dekker, Cornelia L;
Koller, Daphne;
Davis, Mark M

Publication type:

Article

Erratum To: Apoptosis and other immune biomarkers predict influenza vaccine responsiveness.

Published in:

2013

By:

Furman, David;
Jojic, Vladimir;
Kidd, Brian;
Shen‐Orr, Shai;
Price, Jordan;
Jarrell, Justin;
Tse, Tiffany;
Huang, Huang;
Lund, Peder;
Maecker, Holden T;
Utz, Paul J;
Dekker, Cornelia L;
Koller, Daphne;
Davis, Mark M

Publication type:

Correction Notice

Apoptosis and other immune biomarkers predict influenza vaccine responsiveness.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.15

By:

Furman, David;
Jojic, Vladimir;
Kidd, Brian;
Shen‐Orr, Shai;
Price, Jordan;
Jarrell, Justin;
Tse, Tiffany;
Huang, Huang;
Lund, Peder;
Maecker, Holden T;
Utz, Paul J;
Dekker, Cornelia L;
Koller, Daphne;
Davis, Mark M

Publication type:

Article

Apoptosis and other immune biomarkers predict influenza vaccine responsiveness.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.15

By:

Furman, David;
Jojic, Vladimir;
Kidd, Brian;
Shen‐Orr, Shai;
Price, Jordan;
Jarrell, Justin;
Tse, Tiffany;
Huang, Huang;
Lund, Peder;
Maecker, Holden T;
Utz, Paul J;
Dekker, Cornelia L;
Koller, Daphne;
Davis, Mark M

Publication type:

Article

Comparison of Immunogen Designs That Optimize Peptide Coverage: Reply to Fischer et al.

Published in:

2008

By:

Nickle, David C.;
Rolland, Morgane;
Mullins, James I.;
Heckerman, David;
Kirovski, Darko;
Jojic, Vladimir;
Pond, Sergei Kosakovsky

Publication type:

Letter

HLA-B57 micropolymorphism defines the sequence and conformational breadth of the immunopeptidome.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07109-w

By:

Illing, Patricia T.;
Pymm, Phillip;
Croft, Nathan P.;
Hilton, Hugo G.;
Jojic, Vladimir;
Han, Alex S.;
Mendoza, Juan L.;
Mifsud, Nicole A.;
Dudek, Nadine L.;
McCluskey, James;
Parham, Peter;
Rossjohn, Jamie;
Vivian, Julian P.;
Purcell, Anthony W.

Publication type:

Article

Design of synthetic bacterial communities for predictable plant phenotypes.

Published in:

PLoS Biology, 2018, v. 16, n. 2, p. 1, doi. 10.1371/journal.pbio.2003962

By:

Herrera Paredes, Sur;
Gao, Tianxiang;
Law, Theresa F.;
Finkel, Omri M.;
Mucyn, Tatiana;
Teixeira, Paulo José Pereira Lima;
Salas González, Isaí;
Feltcher, Meghan E.;
Powers, Matthew J.;
Shank, Elizabeth A.;
Jones, Corbin D.;
Jojic, Vladimir;
Dangl, Jeffery L.;
Castrillo, Gabriel

Publication type:

Article

Identification of transcriptional regulators in the mouse immune system.

Published in:

Nature Immunology, 2013, v. 14, n. 6, p. 633, doi. 10.1038/ni.2587

By:

Jojic, Vladimir;
Shay, Tal;
Sylvia, Katelyn;
Zuk, Or;
Sun, Xin;
Kang, Joonsoo;
Regev, Aviv;
Koller, Daphne;
Best, Adam J;
Knell, Jamie;
Goldrath, Ananda;
Cohen, Nadia;
Brennan, Patrick;
Brenner, Michael;
Kim, Francis;
Rao, Tata Nageswara;
Wagers, Amy;
Heng, Tracy;
Ericson, Jeffrey;
Rothamel, Katherine

Publication type:

Article

The transcriptional landscape of αβ T cell differentiation.

Published in:

Nature Immunology, 2013, v. 14, n. 6, p. 619, doi. 10.1038/ni.2590

By:

Mingueneau, Michael;
Kreslavsky, Taras;
Gray, Daniel;
Heng, Tracy;
Cruse, Richard;
Ericson, Jeffrey;
Bendall, Sean;
Spitzer, Matthew H;
Nolan, Garry P;
Kobayashi, Koichi;
von Boehmer, Harald;
Mathis, Diane;
Benoist, Christophe;
Best, Adam J;
Knell, Jamie;
Goldrath, Ananda;
Jojic, Vladimir;
Koller, Daphne;
Shay, Tal;
Regev, Aviv

Publication type:

Article

Age and diet shape the genetic architecture of body weight in diversity outbred mice.

Published in:

eLife, 2022, p. 1, doi. 10.7554/eLife.64329

By:

Wrigh, Kevin M.;
Deighan, Andrew G.;
Di Francesco, Andrea;
Freund, Adam;
Jojic, Vladimir;
Churchill, Gary A.;
Raj, Anil

Publication type:

Article

Tradict enables accurate prediction of eukaryotic transcriptional states from 100 marker genes.

Published in:

Nature Communications, 2017, v. 8, n. 5, p. 15309, doi. 10.1038/ncomms15309

By:

Biswas, Surojit;
Kerner, Konstantin;
Teixeira, Paulo José Pereira Lima;
Dangl, Jeffery L.;
Jojic, Vladimir;
Wigge, Philip A.

Publication type:

Article

Cytomegalovirus infection enhances the immune response to influenza.

Published in:

Science Translational Medicine, 2015, v. 7, n. 281, p. 1, doi. 10.1126/scitranslmed.aaa2293

By:

Furman, David;
Jojic, Vladimir;
Sharma, Shalini;
Shen-Orr, Shai S.;
Angel, Cesar J. L.;
Onengut-Gumuscu, Suna;
Kidd, Brian A.;
Maecker, Holden T.;
Concannon, Patrick;
Dekker, Cornelia L.;
Thomas, Paul G.;
Davis, Mark M.

Publication type:

Article

Fully phased sequence of a diploid human genome determined de novo from the DNA of a single individual.

Published in:

G3: Genes | Genomes | Genetics, 2020, v. 10, n. 9, p. 1, doi. 10.1534/g3.119.400995

By:

Soifer, Ilya;
Fong, Nicole L.;
Yi, Nelda;
Ireland, Andrea T.;
Lam, Irene;
Sooknah, Matthew;
Paw, Jonathan S.;
Peluso, Paul;
Concepcion, Gregory T.;
Rank, David;
Hastie, Alex R.;
Jojic, Vladimir;
Graham Ruby, J.;
Botstein, David;
Roy, Margaret A.

Publication type:

Article