Works by Johnson, Welkin E.

Results: 24

TRIM5 Suppresses Cross-Species Transmission of a Primate Immunodeficiency Virus and Selects for Emergence of Resistant Variants in the New Species.

Published in:

PLoS Biology, 2010, v. 8, n. 8, p. 1, doi. 10.1371/journal.pbio.1000462

By:

Kirmaier, Andrea;
Fan Wu;
Newman, Ruchi M.;
Hall, Laura R.;
Morgan, Jennifer S.;
O'Connor, Shelby;
Marx, Preston A.;
Meythaler, Mareike;
Goldstein, Simoy;
Buckler-White, Alicia;
Kaur, Amitinder;
Hirsch, Vanessa M.;
Johnson, Welkin E.

Publication type:

Article

Recombinant origin and interspecies transmission of a HERV-K(HML-2)-related primate retrovirus with a novel RNA transport element.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.80216

By:

Williams, Zachary H.;
Imedio, Alvaro Dafonte;
Gaucherand, Lea;
Lee, Derek C.;
Mostafa, Salwa Mohd;
Phelan, James P.;
Coffin, John M.;
Johnson, Welkin E.

Publication type:

Article

Refinement of primate copy number variation hotspots identifies candidate genomic regions evolving under positive selection.

Published in:

Genome Biology, 2011, v. 12, n. 5, p. 1, doi. 10.1186/gb-2011-12-5-r52

By:

Gokcumen, Omer;
Babb, Paul L.;
Iskow, Rebecca C.;
Qihui Zhu;
Xinghua Shi;
Mills, Ryan E.;
Ionita-Laza, Iuliana;
Vallender, Eric J.;
Clark, Andrew G.;
Johnson, Welkin E.;
Lee, Charles

Publication type:

Article

Prevention of Infection by a Granulocyte-Macrophage Colony-Stimulating Factor Co-Expressing DNA/Modified Vaccinia Ankara Simian Immunodeficiency Virus Vaccine.

Published in:

Journal of Infectious Diseases, 2011, v. 204, n. 1, p. 164, doi. 10.1093/infdis/jir199

By:

Lai, Lilin;
Kwa, SueFen;
Kozlowski, Pamela A.;
Montefiori, David C.;
Ferrari, Guido;
Johnson, Welkin E.;
Hirsch, Vanessa;
Villinger, Francois;
Chennareddi, Lakshmi;
Earl, Patricia L.;
Moss, Bernard;
Amara, Rama Rao;
Robinson, Harriet L.

Publication type:

Article

Evolutionary and Functional Analysis of Old World Primate TRIM5 Reveals the Ancient Emergence of Primate Lentiviruses and Convergent Evolution Targeting a Conserved Capsid Interface.

Published in:

PLoS Pathogens, 2015, v. 11, n. 8, p. 1, doi. 10.1371/journal.ppat.1005085

By:

McCarthy, Kevin R.;
Kirmaier, Andrea;
Autissier, Patrick;
Johnson, Welkin E.

Publication type:

Article

Phylogeny and History of the Lost SIV from Crab-Eating Macaques: SIVmfa.

Published in:

PLoS ONE, 2016, v. 11, n. 7, p. 1, doi. 10.1371/journal.pone.0159281

By:

McCarthy, Kevin R.;
Johnson, Welkin E.;
Kirmaier, Andrea

Publication type:

Article

An Intact Retroviral Gene Conserved in Spiny-Rayed Fishes for over 100 My.

Published in:

Molecular Biology & Evolution, 2017, v. 34, n. 3, p. 634, doi. 10.1093/molbev/msw262

By:

Henzy, Jamie E.;
Gifford, Robert J.;
Kenaley, Christopher P.;
Johnson, Welkin E.

Publication type:

Article

Immunohistochemical identification of trigeminal ganglion neurons that innervate the mouse cornea: Relevance to intercellular spread of herpes simplex virus.

Published in:

Journal of Comparative Neurology, 1993, v. 327, n. 1, p. 133, doi. 10.1002/cne.903270111

By:

LaVail, Jennifer H.;
Johnson, Welkin E.;
Spencer, Lawrence C.

Publication type:

Article

The evolution of infectious agents in relation to sex in animals and humans: brief discussions of some individual organisms.

Published in:

Annals of the New York Academy of Sciences, 2011, v. 1230, n. 1, p. 74, doi. 10.1111/j.1749-6632.2011.06133.x

By:

Reed, David L.;
Currier, Russell W.;
Walton, Shelley F.;
Conrad, Melissa;
Sullivan, Steven A.;
Carlton, Jane M.;
Read, Timothy D.;
Severini, Alberto;
Tyler, Shaun;
Eberle, R.;
Johnson, Welkin E.;
Silvestri, Guido;
Clarke, Ian N.;
Lagergård, Teresa;
Lukehart, Sheila A.;
Unemo, Magnus;
Shafer, William M.;
Beasley, R. Palmer;
Bergström, Tomas;
Norberg, Peter

Publication type:

Article

A penalized regression approach to haplotype reconstruction of viral populations arising in early HIV/SIV infection.

Published in:

Bioinformatics, 2017, v. 33, n. 16, p. 2455, doi. 10.1093/bioinformatics/btx187

By:

Leviyang, Sivan;
Griva, Igor;
Ita, Sergio;
Johnson, Welkin E.

Publication type:

Article

Nomenclature for endogenous retrovirus (ERV) loci.

Published in:

Retrovirology, 2018, v. 15, n. 1, p. N.PAG, doi. 10.1186/s12977-018-0442-1

By:

Gifford, Robert J.;
Blomberg, Jonas;
Coffin, John M.;
Fan, Hung;
Heidmann, Thierry;
Mayer, Jens;
Stoye, Jonathan;
Tristem, Michael;
Johnson, Welkin E.

Publication type:

Article

Plastic Proteins and Monkey Blocks: How Lentiviruses Evolved to Replicate in the Presence of Primate Restriction Factors.

Published in:

PLoS Pathogens, 2014, v. 10, n. 4, p. 1, doi. 10.1371/journal.ppat.1004017

By:

McCarthy, Kevin R.;
Johnson, Welkin E.

Publication type:

Article

APOBEC3G Polymorphism as a Selective Barrier to Cross-Species Transmission and Emergence of Pathogenic SIV and AIDS in a Primate Host.

Published in:

PLoS Pathogens, 2013, v. 9, n. 10, p. 1, doi. 10.1371/journal.ppat.1003641

By:

Krupp, Annabel;
McCarthy, Kevin R.;
Ooms, Marcel;
Letko, Michael;
Morgan, Jennifer S.;
Simon, Viviana;
Johnson, Welkin E.

Publication type:

Article

Gain-of-Sensitivity Mutations in a Trim5-Resistant Primary Isolate of Pathogenic SIV Identify Two Independent Conserved Determinants of Trim5α Specificity

Published in:

PLoS Pathogens, 2013, v. 9, n. 5, p. 1, doi. 10.1371/journal.ppat.1003352

By:

McCarthy, Kevin R.;
Schmidt, Aaron G.;
Kirmaier, Andrea;
Wyand, Allison L.;
Newman, Ruchi M.;
Johnson, Welkin E.

Publication type:

Article

Species-Specific Activity of SIV Nef and HIV-1 Vpu in Overcoming Restriction by Tetherin/BST2.

Published in:

PLoS Pathogens, 2009, v. 5, n. 5, p. 1, doi. 10.1371/journal.ppat.1000429

By:

Bin Jia;
Serra-Moreno, Ruth;
Neidermyer Jr., William;
Rahmberg, Andrew;
Mackey, John;
Fofana, Ismael Ben;
Johnson, Welkin E.;
Westmoreland, Susan;
Evans, David T.

Publication type:

Article

Species-Specific Activity of HIV-1 Vpu and Positive Selection of Tetherin Transmembrane Domain Variants.

Published in:

PLoS Pathogens, 2009, v. 5, n. 2, p. 1, doi. 10.1371/journal.ppat.1000300

By:

McNatt, Matthew W.;
Zang, Trinity;
Hatziioannou, Theodora;
Bartlett, Mackenzie;
Fofana, Ismael Ben;
Johnson, Welkin E.;
Neil, Stuart J. D.;
Bieniasz, Paul D.

Publication type:

Article

Analysis of copy number variation in the rhesus macaque genome identifies candidate loci for evolutionary and human disease studies.

Published in:

Human Molecular Genetics, 2008, v. 17, n. 8, p. 1127, doi. 10.1093/hmg/ddn002

By:

Lee, Arthur S.;
Gutiérrez-Arcelus, María;
Perry, George H.;
Vallender, Eric J.;
Johnson, Welkin E.;
Miller, Gregory M.;
Korbel, Jan O.;
Lee, Charles

Publication type:

Article

Unique Structure and Distinctive Properties of the Ancient and Ubiquitous Gamma-Type Envelope Glycoprotein.

Published in:

Viruses (1999-4915), 2023, v. 15, n. 2, p. 274, doi. 10.3390/v15020274

By:

Hogan, Victoria;
Johnson, Welkin E.

Publication type:

Article

Live Attenuated Rev-Independent Nef¯SIV Enhances Acquisition of Heterologous SIVsmE660 in Acutely Vaccinated Rhesus Macaques.

Published in:

PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0075556

By:

Byrareddy, Siddappa N.;
Ayash-Rashkovsky, Mila;
Kramer, Victor G.;
Lee, Sandra J.;
Correll, Mick;
Novembre, Francis J.;
Villinger, Francois;
Johnson, Welkin E.;
von Gegerfelt, Agneta;
Felber, Barbara K.;
Ruprecht, Ruth M.

Publication type:

Article

Elevated Rate of Fixation of Endogenous Retroviral Elements in Haplorhini TRIM5 and TRIM22 Genomic Sequences: Impact on Transcriptional Regulation.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0058532

By:

Diehl, William E.;
Johnson, Welkin E.;
Hunter, Eric

Publication type:

Article

Early Emergence and Selection of a SIV-LTR C/EBP Site Variant in SIV- Infected Macaques That Increases Virus Infectivity.

Published in:

PLoS ONE, 2012, v. 7, n. 8, p. 1, doi. 10.1371/journal.pone.0042801

By:

Ravimohan, Shruthi;
Gama, Lucio;
Engle, Elizabeth L.;
Zink, M. Christine;
Clements, Janice E.;
Johnson, Welkin E.

Publication type:

Article

Phylogenetic sleuthing reveals pair of paralogous genes.

Published in:

eLife, 2016, p. 1, doi. 10.7554/eLife.17224

By:

HENZY, JAMIE E.;
JOHNSON, WELKIN E.

Publication type:

Article

Tracking interspecies transmission and long-term evolution of an ancient retrovirus using the genomes of modern mammals.

Published in:

eLife, 2016, p. 1, doi. 10.7554/eLife.12704

By:

Diehl, William E.;
Patel, Nirali;
Halm, Kate;
Johnson, Welkin E.

Publication type:

Article

Assisted suicide for retroviruses.

Published in:

Nature Biotechnology, 2007, v. 25, n. 6, p. 643, doi. 10.1038/nbt0607-643

By:

Johnson, Welkin E.

Publication type:

Article

Works by Johnson, Welkin E.

TRIM5 Suppresses Cross-Species Transmission of a Primate Immunodeficiency Virus and Selects for Emergence of Resistant Variants in the New Species.

Recombinant origin and interspecies transmission of a HERV-K(HML-2)-related primate retrovirus with a novel RNA transport element.

Refinement of primate copy number variation hotspots identifies candidate genomic regions evolving under positive selection.

Prevention of Infection by a Granulocyte-Macrophage Colony-Stimulating Factor Co-Expressing DNA/Modified Vaccinia Ankara Simian Immunodeficiency Virus Vaccine.

Evolutionary and Functional Analysis of Old World Primate TRIM5 Reveals the Ancient Emergence of Primate Lentiviruses and Convergent Evolution Targeting a Conserved Capsid Interface.

Phylogeny and History of the Lost SIV from Crab-Eating Macaques: SIVmfa.

An Intact Retroviral Gene Conserved in Spiny-Rayed Fishes for over 100 My.

Immunohistochemical identification of trigeminal ganglion neurons that innervate the mouse cornea: Relevance to intercellular spread of herpes simplex virus.

The evolution of infectious agents in relation to sex in animals and humans: brief discussions of some individual organisms.

A penalized regression approach to haplotype reconstruction of viral populations arising in early HIV/SIV infection.

Nomenclature for endogenous retrovirus (ERV) loci.

Plastic Proteins and Monkey Blocks: How Lentiviruses Evolved to Replicate in the Presence of Primate Restriction Factors.

<i>APOBEC3G</i> Polymorphism as a Selective Barrier to Cross-Species Transmission and Emergence of Pathogenic SIV and AIDS in a Primate Host.

Gain-of-Sensitivity Mutations in a Trim5-Resistant Primary Isolate of Pathogenic SIV Identify Two Independent Conserved Determinants of Trim5α Specificity

Species-Specific Activity of SIV Nef and HIV-1 Vpu in Overcoming Restriction by Tetherin/BST2.

Species-Specific Activity of HIV-1 Vpu and Positive Selection of Tetherin Transmembrane Domain Variants.

Analysis of copy number variation in the rhesus macaque genome identifies candidate loci for evolutionary and human disease studies.

Unique Structure and Distinctive Properties of the Ancient and Ubiquitous Gamma-Type Envelope Glycoprotein.

Live Attenuated Rev-Independent Nef¯SIV Enhances Acquisition of Heterologous SIVsmE660 in Acutely Vaccinated Rhesus Macaques.

Elevated Rate of Fixation of Endogenous Retroviral Elements in Haplorhini <i>TRIM5</i> and <i>TRIM22</i> Genomic Sequences: Impact on Transcriptional Regulation.

Early Emergence and Selection of a SIV-LTR C/EBP Site Variant in SIV- Infected Macaques That Increases Virus Infectivity.

Phylogenetic sleuthing reveals pair of paralogous genes.

Tracking interspecies transmission and long-term evolution of an ancient retrovirus using the genomes of modern mammals.

Assisted suicide for retroviruses.