Found: 49
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A Bayesian approach for accurate de novo transcriptome assembly.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-97015-x
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- Publication type:
- Article
ChIP-GSM: Inferring active transcription factor modules to predict functional regulatory elements.
- Published in:
- PLoS Computational Biology, 2021, v. 17, n. 7, p. 1, doi. 10.1371/journal.pcbi.1009203
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- Publication type:
- Article
ChIP-BIT2: a software tool to detect weak binding events using a Bayesian integration approach.
- Published in:
- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04108-5
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- Publication type:
- Article
IntAPT: integrated assembly of phenotype-specific transcripts from multiple RNA-seq profiles.
- Published in:
- Bioinformatics, 2021, v. 37, n. 5, p. 650, doi. 10.1093/bioinformatics/btaa852
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- Publication type:
- Article
Identifying intracellular signaling modules and exploring pathways associated with breast cancer recurrence.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-020-79603-5
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- Publication type:
- Article
Author Correction: BICORN: An R package for integrative inference of de novo cis-regulatory modules.
- Published in:
- 2020
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- Publication type:
- Correction Notice
Inactivation of Arid1a in the endometrium is associated with endometrioid tumorigenesis through transcriptional reprogramming.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16416-0
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- Publication type:
- Article
BICORN: An R package for integrative inference of de novo cis-regulatory modules.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-63043-2
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- Publication type:
- Article
CRNET: an efficient sampling approach to infer functional regulatory networks by integrating large-scale ChIP-seq and time-course RNA-seq data.
- Published in:
- Bioinformatics, 2018, v. 34, n. 10, p. 1733, doi. 10.1093/bioinformatics/btx827
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- Publication type:
- Article
SparseIso: a novel Bayesian approach to identify alternatively spliced isoforms from RNA-seq data.
- Published in:
- Bioinformatics, 2018, v. 34, n. 1, p. 56, doi. 10.1093/bioinformatics/btx557
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- Publication type:
- Article
Maternal intake of high n-6 polyunsaturated fatty acid diet during pregnancy causes transgenerational increase in mammary cancer risk in mice.
- Published in:
- 2017
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- Publication type:
- journal article
CyNetSVM: A Cytoscape App for Cancer Biomarker Identification Using Network Constrained Support Vector Machines.
- Published in:
- PLoS ONE, 2017, v. 12, n. 1, p. 1, doi. 10.1371/journal.pone.0170482
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- Publication type:
- Article
DM-BLD: differential methylation detection using a hierarchical Bayesian model exploiting local dependency.
- Published in:
- Bioinformatics, 2017, v. 33, n. 2, p. 161, doi. 10.1093/bioinformatics/btw596
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- Publication type:
- Article
PSSV: a novel pattern-based probabilistic approach for somatic structural variation identification.
- Published in:
- Bioinformatics, 2017, v. 33, n. 2, p. 177, doi. 10.1093/bioinformatics/btw605
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- Publication type:
- Article
ChIP-BIT: Bayesian inference of target genes using a novel joint probabilistic model of ChIP-seq profiles.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. 7, p. e65, doi. 10.1093/nar/gkv1491
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- Publication type:
- Article
Isoflavones in soy flour diet have different effects on whole-genome expression patterns than purified isoflavone mix in human MCF-7 breast tumors in ovariectomized athymic nude mice.
- Published in:
- Molecular Nutrition & Food Research, 2015, v. 59, n. 8, p. 1419, doi. 10.1002/mnfr.201500028
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- Publication type:
- Article
BMRF-Net: a software tool for identification of protein interaction subnetworks by a bagging Markov random field-based method.
- Published in:
- 2015
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- Publication type:
- Product Review
BMRF-MI: integrative identification of protein interaction network by modeling the gene dependency.
- Published in:
- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/1471-2164-16-S7-S10
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- Publication type:
- Article
KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring.
- Published in:
- 2015
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- Publication type:
- Case Study
UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples.
- Published in:
- Bioinformatics, 2015, v. 31, n. 1, p. 137, doi. 10.1093/bioinformatics/btu607
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- Publication type:
- Article
BADGE: A novel Bayesian model for accurate abundance quantification and differential analysis of RNA-Seq data.
- Published in:
- BMC Bioinformatics, 2014, v. 15, p. 1, doi. 10.1186/1471-2105-15-S9-S6
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- Publication type:
- Article
Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic.
- Published in:
- 2014
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- Publication type:
- Correction Notice
Knowledge-fused differential dependency network models for detecting significant rewiring in biological networks.
- Published in:
- BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0087-1
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- Publication type:
- Article
mAPC-GibbsOS: an integrated approach for robust identification of gene regulatory networks.
- Published in:
- BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S5-S4
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- Publication type:
- Article
The CAM Software for Nonnegative Blind Source Separation in R-Java.
- Published in:
- Journal of Machine Learning Research, 2013, v. 14, p. 2899
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- Publication type:
- Article
Identifying protein interaction subnetworks by a bagging Markov random field-based method.
- Published in:
- Nucleic Acids Research, 2013, v. 41, n. 2, p. e42, doi. 10.1093/nar/gks951
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- Publication type:
- Article
Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic.
- Published in:
- Bioinformatics, 2012, v. 28, n. 15, p. 1990
- By:
- Publication type:
- Article
DDN: a caBIG® analytical tool for differential network analysis.
- Published in:
- Bioinformatics, 2011, v. 27, n. 7, p. 1036, doi. 10.1093/bioinformatics/btr052
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- Publication type:
- Article
PUGSVM: a caBIGTM analytical tool for multiclass gene selection and predictive classification.
- Published in:
- Bioinformatics, 2011, v. 27, n. 5, p. 736, doi. 10.1093/bioinformatics/btq721
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- Publication type:
- Article
Endoplasmic reticulum stress, the unfolded protein response, and gene network modeling in antiestrogen resistant breast cancer.
- Published in:
- Hormone Molecular Biology & Clinical Investigation, 2011, v. 5, n. 1, p. 35, doi. 10.1515/HMBCI.2010.073
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- Publication type:
- Article
Motif-guided sparse decomposition of gene expression data for regulatory module identification.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. 1, p. 82, doi. 10.1186/1471-2105-12-82
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- Publication type:
- Article
Applications of DifferentWeighting Schemes to Improve Pathway-Based Analysis.
- Published in:
- Comparative & Functional Genomics, 2011, p. 1, doi. 10.1155/2011/463645
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- Publication type:
- Article
Multilevel learning-based segmentation of ill-defined and spiculated masses in mammograms.
- Published in:
- Medical Physics, 2010, v. 37, n. 11, p. 5993, doi. 10.1118/1.3490477
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- Publication type:
- Article
Matched Gene Selection and Committee Classifier for Molecular Classification of Heterogeneous Diseases.
- Published in:
- Journal of Machine Learning Research, 2010, v. 11, n. 8, p. 2141
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- Publication type:
- Article
Multilevel support vector regression analysis to identify condition-specific regulatory networks.
- Published in:
- Bioinformatics, 2010, v. 26, n. 11, p. 1416, doi. 10.1093/bioinformatics/btq144
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- Publication type:
- Article
Reconstruction of Gene Regulatory Modules in Cancer Cell Cycle by Multi-Source Data Integration.
- Published in:
- PLoS ONE, 2010, v. 5, n. 4, p. 1, doi. 10.1371/journal.pone.0010268
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- Publication type:
- Article
Knowledge-guided gene ranking by coordinative component analysis.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 162, doi. 10.1186/1471-2105-11-162
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- Publication type:
- Article
Differential dependency network analysis to identify condition-specific topological changes in biological networks.
- Published in:
- Bioinformatics, 2009, v. 25, n. 4, p. 526, doi. 10.1093/bioinformatics/btn660
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- Publication type:
- Article
Reverse engineering module networks by PSO-RNN hybrid modeling.
- Published in:
- BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-S1-S15
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- Publication type:
- Article
Motif-directed network component analysis for regulatory network inference.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S1-S21
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- Publication type:
- Article
caBIG VISDA: Modeling, visualization, and discovery for cluster analysis of genomic data.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-383
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- Publication type:
- Article
Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-203
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- Publication type:
- Article
The properties of high-dimensional data spaces: implications for exploring gene and protein expression data.
- Published in:
- Nature Reviews Cancer, 2008, v. 8, n. 1, p. 37, doi. 10.1038/nrc2294
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- Publication type:
- Article
VISDA: an open-source caBIGTM analytical tool for data clustering and beyond.
- Published in:
- Bioinformatics, 2007, v. 23, n. 15, p. 2024, doi. 10.1093/bioinformatics/btm290
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- Publication type:
- Article
Improved Diagnostics Using Polarization Imaging and Artificial Neural Networks.
- Published in:
- International Journal of Biomedical Imaging, 2007, p. 1, doi. 10.1155/2007/74143
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- Publication type:
- Article
Optimized multilayer perceptrons for molecular classification and diagnosis using genomic data.
- Published in:
- Bioinformatics, 2006, v. 22, n. 6, p. 755, doi. 10.1093/bioinformatics/btk036
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- Publication type:
- Article
Nonrigid Medical Image Registration by Finite-Element Deformable Sheet-Curve Models.
- Published in:
- International Journal of Biomedical Imaging, 2006, p. 1, doi. 10.1155/IJBI/2006/73430
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- Publication type:
- Article
Modeling and Reconstruction of Mixed Functional and Molecular Patterns.
- Published in:
- International Journal of Biomedical Imaging, 2006, p. 1, doi. 10.1155/IJBI/2006/29707
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- Publication type:
- Article
Automatic detection of foreign objects in computed radiography.
- Published in:
- Journal of Biomedical Optics, 2000, v. 5, n. 4, p. 425, doi. 10.1117/1.1289771
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- Publication type:
- Article