Works matching AU Jeddeloh, Jeffrey A

Results: 27

Sorghum Genome Sequencing by Methylation Filtration.

Published in:

PLoS Biology, 2005, v. 3, n. 1, p. 1, doi. 10.1371/journal.pbio.0030013

By:

Bedell, Joseph A;
Budiman, Muhammad A;
Nunberg, Andrew;
Citek, Robert W;
Robbins, Dan;
Jones, Joshua;
Flick, Elizabeth;
Rohlfing, Theresa;
Fries, Jason;
Bradford, Kourtney;
McMenamy, Jennifer;
Smith, Michael;
Holeman, Heather;
Roe, Bruce A;
Wiley, Graham;
Korf, Ian F;
Rabinowicz, Pablo D;
Lakey, Nathan;
McCombie, W. Richard;
Jeddeloh, Jeffrey A

Publication type:

Article

Sorghum Genome Sequencing by Methylation Filtration.

Published in:

PLoS Biology, 2005, v. 3, n. 1, p. 103, doi. 10.1371/journal.pbio.0030013

By:

Bedell, Joseph A.;
Budiman, Muhammad A.;
Nunberg, Andrew;
Citek, Robert W.;
Robbins, Dan;
Jones, Joshua;
Flick, Elizabeth;
Rohlfing, Theresa;
Fries, Jason;
Bradford, Kourtney;
McMenamy, Jennifer;
Smith, Michael;
Holeman, Heather;
Roe, Bruce A.;
Wiley, Graham;
Korf, Ian F.;
Rabinowicz, Pablo D.;
Lakey, Nathan;
McCombie, W. Richard;
Jeddeloh, Jeffrey A.

Publication type:

Article

Fluorescence in situ hybridization with high-complexity repeat-free oligonucleotide probes generated by massively parallel synthesis.

Published in:

Chromosome Research, 2011, v. 19, n. 7, p. 901, doi. 10.1007/s10577-011-9245-0

By:

Boyle, Shelagh;
Rodesch, Matthew;
Halvensleben, Heather;
Jeddeloh, Jeffrey;
Bickmore, Wendy

Publication type:

Article

Extreme-phenotype genome-wide association study ( XP- GWAS): a method for identifying trait-associated variants by sequencing pools of individuals selected from a diversity panel.

Published in:

Plant Journal, 2015, v. 84, n. 3, p. 587, doi. 10.1111/tpj.13029

By:

Yang, Jinliang;
Jiang, Haiying;
Yeh, Cheng‐Ting;
Yu, Jianming;
Jeddeloh, Jeffrey A.;
Nettleton, Dan;
Schnable, Patrick S.

Publication type:

Article

Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum.

Published in:

Plant Journal, 2014, v. 79, n. 6, p. 993, doi. 10.1111/tpj.12601

By:

Evans, Joseph;
Kim, Jeongwoon;
Childs, Kevin L.;
Vaillancourt, Brieanne;
Crisovan, Emily;
Nandety, Aruna;
Gerhardt, Daniel J.;
Richmond, Todd A.;
Jeddeloh, Jeffrey A.;
Kaeppler, Shawn M.;
Casler, Michael D.;
Buell, C. Robin

Publication type:

Article

RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships.

Published in:

Epigenetics & Chromatin, 2015, v. 8, p. 1, doi. 10.1186/s13072-015-0040-6

By:

Nadel, Julie;
Athanasiadou, Rodoniki;
Lemetre, Christophe;
Wijetunga, N. Ari;
Broin, Pilib Ó;
Sato, Hanae;
Zhengdong Zhang;
Jeddeloh, Jeffrey;
Montagna, Cristina;
Golden, Aaron;
Seoighe, Cathal;
Greally, John M.

Publication type:

Article

Changes in genome content generated via segregation of non-allelic homologs.

Published in:

Plant Journal, 2012, v. 72, n. 3, p. 390, doi. 10.1111/j.1365-313X.2012.05087.x

By:

Liu, Sanzhen;
Ying, Kai;
Yeh, Cheng-Ting;
Yang, Jinliang;
Swanson-Wagner, Ruth;
Wu, Wei;
Richmond, Todd;
Gerhardt, Daniel J.;
Lai, Jinsheng;
Springer, Nathan;
Nettleton, Dan;
Jeddeloh, Jeffrey A.;
Schnable, Patrick S.

Publication type:

Article

Repeat subtraction-mediated sequence capture from a complex genome.

Published in:

Plant Journal, 2010, v. 62, n. 5, p. 898, doi. 10.1111/j.1365-313X.2010.04196.x

By:

Yan Fu;
Springer, Nathan M.;
Gerhardt, Daniel J.;
Kai Ying;
Cheng-Ting Yeh;
Wei Wu;
Swanson-Wagner, Ruth;
D'Ascenzo, Mark;
Millard, Tracy;
Freeberg, Lindsay;
Aoyama, Natsuyo;
Kitzman, Jacob;
Burgess, Daniel;
Richmond, Todd;
Albert, Thomas J.;
Barbazuk, W. Brad;
Jeddeloh, Jeffrey A.;
Schnable, Patrick S.

Publication type:

Article

Maintenance of genomic methylation requires a SWI2/SNF2-like protein.

Published in:

Nature Genetics, 1999, v. 22, n. 1, p. 94, doi. 10.1038/8803

By:

Jeddeloh, Jeffrey A.;
Stokes, Trevor L.;
Richards, Eric J.

Publication type:

Article

Maize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content.

Published in:

PLoS Genetics, 2009, v. 5, n. 11, p. 1, doi. 10.1371/journal.pgen.1000734

By:

Springer, Nathan M.;
Kai Ying;
Yan Fu;
Tieming Ji;
Cheng-Ting Yeh;
Yi Jia;
Wei Wu;
Richmond, Todd;
Kitzman, Jacob;
Rosenbaum, Heidi;
Iniguez, A. Leonardo;
Barbazuk, W. Brad;
Jeddeloh, Jeffrey A.;
Nettleton, Dan;
Schnable, Patrick S.

Publication type:

Article

Genetic Perturbation of the Maize Methylome.

Published in:

Plant Cell, 2014, v. 26, n. 12, p. 4602, doi. 10.1105/tpc.114.133140

By:

Li, Qing;
Eichten, Steven R.;
Hermanson, Peter J.;
Zaunbrecher, Virginia M.;
Song, Jawon;
Wendt, Jennifer;
Rosenbaum, Heidi;
Madzima, Thelma F.;
Sloan, Amy E.;
Huang, Ji;
Burgess, Daniel L.;
Richmond, Todd A.;
McGinnis, Karen M.;
Meeley, Robert B.;
Danilevskaya, Olga N.;
Vaughn, Matthew W.;
Kaeppler, Shawn M.;
Jeddeloh, Jeffrey A.;
Springer, Nathan M.

Publication type:

Article

mCCG methylation in angiosperms.

Published in:

Plant Journal, 1996, v. 9, n. 5, p. 579, doi. 10.1046/j.1365-313X.1996.9050579.x

By:

Jeddeloh, Jeffrey A.;
Richards, Eric J.

Publication type:

Article

Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum.

Published in:

Cell Proliferation, 2014, v. 47, n. 6, p. 993, doi. 10.1111/tpj.12601

By:

Evans, Joseph;
Kim, Jeongwoon;
Childs, Kevin L.;
Vaillancourt, Brieanne;
Crisovan, Emily;
Nandety, Aruna;
Gerhardt, Daniel J.;
Richmond, Todd A.;
Jeddeloh, Jeffrey A.;
Kaeppler, Shawn M.;
Casler, Michael D.;
Buell, C. Robin

Publication type:

Article

Structural Variants in the Soybean Genome Localize to Clusters of Biotic Stress-Response Genes1[W][OA].

Published in:

Plant Physiology, 2012, v. 159, n. 4, p. 1295, doi. 10.1104/pp.112.194605

By:

McHale, Leah K.;
Haun, William J.;
Xu, Wayne W.;
Bhaskar, Pudota B.;
Anderson, Justin E.;
Hyten, David L.;
Gerhardt, Daniel J.;
Jeddeloh, Jeffrey A.;
Stupar, Robert M.

Publication type:

Article

B73-Mo17 Near-Isogenic Lines Demonstrate Dispersed Structural Variation in Maize1[W][OA].

Published in:

Plant Physiology, 2011, v. 156, n. 4, p. 1679, doi. 10.1104/pp.111.174748

By:

Eichten, Steven R.;
Foerster, Jillian M.;
de Leon, Natalia;
Ying Kai;
Cheng-Ting Yeh;
Liu, Sanzhen;
Jeddeloh, Jeffrey A.;
Schnable, Patrick S.;
Kaeppler, Shawn M.;
Springer, Nathan M.

Publication type:

Article

Phenotypic and Genomic Analyses of a Fast Neutron Mutant Population Resource in Soybean.

Published in:

Plant Physiology, 2011, v. 156, n. 1, p. 240, doi. 10.1104/pp.110.170811

By:

Yung-Tsi Bolon;
Haun, William J.;
Xu, Wayne W.;
Grant, David;
Stacey, Minviluz G.;
Nelson, Rex T.;
Gerhardt, Daniel J.;
Jeddeloh, Jeffrey A.;
Stacey, Gary;
Muehlbauer, Gary J.;
Orf, James H.;
Naeve, Seth L.;
Stupar, Robert M.;
Vance, Carroll P.

Publication type:

Article

The Composition and Origins of Genomic Variation among Individuals of the Soybean Reference Cultivar Williams 82.

Published in:

Plant Physiology, 2011, v. 155, n. 2, p. 645, doi. 10.1104/pp.110.166736

By:

Haun, William J.;
Hyten, David L.;
Xu, Wayne W.;
Gerhardt, Daniel J.;
Albert, Thomas J.;
Richmond, Todd;
Jeddeloh, Jeffrey A.;
Jia, Gaofeng;
Springer, Nathan M.;
Vance, Carroll P.;
Stupar, Robert M.

Publication type:

Article

A comprehensive resequence analysis of the KLK15–KLK3–KLK2 locus on chromosome 19q13.33.

Published in:

Human Genetics, 2010, v. 127, n. 1, p. 91, doi. 10.1007/s00439-009-0751-5

By:

Parikh, Hemang;
Zuoming Deng;
Yeager, Meredith;
Boland, Joseph;
Matthews, Casey;
Jinping Jia;
Collins, Irene;
White, Ariel;
Burdett, Laura;
Hutchinson, Amy;
Liqun Qi;
Bacior, Jennifer A.;
Lonsberry, Victor;
Rodesch, Matthew J.;
Jeddeloh, Jeffrey A.;
Albert, Thomas J.;
Halvensleben, Heather A.;
Harkins, Timothy T.;
Jiyoung Ahn;
Berndt, Sonja I.

Publication type:

Article

Post-conversion targeted capture of modified cytosines in mammalian and plant genomes.

Published in:

Nucleic Acids Research, 2015, v. 43, n. 12, p. 1, doi. 10.1093/nar/gkv244

By:

Qing Li;
Masako Suzuki;
Wendt, Jennifer;
Patterson, Nicole;
Eichten, Steven R.;
Hermanson, Peter J.;
Green, Dawn;
Jeddeloh, Jeffrey;
Richmond, Todd;
Rosenbaum, Heidi;
Burgess, Daniel;
Springer, Nathan M.;
Greally, John M.

Publication type:

Article

An ENU mutagenesis screen identifies novel and known genes involved in epigenetic processes in the mouse.

Published in:

Genome Biology, 2013, v. 14, n. 9, p. 1, doi. 10.1186/gb-2013-14-9-r96

By:

Daxinger, Lucia;
Harten, Sarah K.;
Oey, Harald;
Epp, Trevor;
Isbel, Luke;
Huang, Edward;
Whitelaw, Nadia;
Apedaile, Anwyn;
Sorolla, Anabel;
Yong, Joan;
Bharti, Vandhana;
Sutton, Joanne;
Ashe, Alyson;
Zhenyi Pang;
Wallace, Nathan;
Gerhardt, Daniel J.;
Blewitt, Marnie E.;
Jeddeloh, Jeffrey A.;
Whitelaw, Emma

Publication type:

Article

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome.

Published in:

Genome Biology, 2013, v. 14, n. 6, p. 1, doi. 10.1186/gb-2013-14-6-r58

By:

Muñoz-Amatriaín, María;
Eichten, Steven R.;
Wicker, Thomas;
Richmond, Todd A.;
Mascher, Martin;
Steuernagel, Burkhard;
Scholz, Uwe;
Ariyadasa, Ruvini;
Spannagl, Manuel;
Nussbaumer, Thomas;
Mayer, Klaus F.X.;
Taudien, Stefan;
Platzer, Matthias;
Jeddeloh, Jeffrey A.;
Springer, Nathan M.;
Muehlbauer, Gary J.;
Stein, Nils

Publication type:

Article

Arabidopsis MET1 Cytosine Methyltransferase Mutants.

Published in:

Genetics, 2003, v. 163, n. 3, p. 1109, doi. 10.1093/genetics/163.3.1109

By:

Kankel, Mark W.;
Ramsey, Douglas E.;
Stokes, Trevor L.;
Flowers, Susan K.;
Haag, Jeremy R.;
Jeddeloh, Jeffrey A.;
Riddle, Nicole C.;
Verbsky, Michelle L.;
Richards, Eric J.

Publication type:

Article

Targeted re-sequencing of the allohexaploid wheat exome.

Published in:

Plant Biotechnology Journal, 2012, v. 10, n. 6, p. 733, doi. 10.1111/j.1467-7652.2012.00713.x

By:

Winfield, Mark O.;
Wilkinson, Paul A.;
Allen, Alexandra M.;
Barker, Gary L. A.;
Coghill, Jane A.;
Burridge, Amanda;
Hall, Anthony;
Brenchley, Rachael C.;
D'Amore, Rosalinda;
Hall, Neil;
Bevan, Michael W.;
Richmond, Todd;
Gerhardt, Daniel J.;
Jeddeloh, Jeffrey A.;
Edwards, Keith J.

Publication type:

Article

Somatic retrotransposition alters the genetic landscape of the human brain.

Published in:

Nature, 2011, v. 479, n. 7374, p. 534, doi. 10.1038/nature10531

By:

Baillie, J. Kenneth;
Barnett, Mark W.;
Upton, Kyle R.;
Gerhardt, Daniel J.;
Richmond, Todd A.;
De Sapio, Fioravante;
Brennan, Paul M.;
Rizzu, Patrizia;
Smith, Sarah;
Fell, Mark;
Talbot, Richard T.;
Gustincich, Stefano;
Freeman, Thomas C.;
Mattick, John S.;
Hume, David A.;
Heutink, Peter;
Carninci, Piero;
Jeddeloh, Jeffrey A.;
Faulkner, Geoffrey J.

Publication type:

Article

The Arabidopsis thaliana mobilome and its impact at the species level.

Published in:

eLife, 2016, p. 1, doi. 10.7554/eLife.15716

By:

Quadrana, Leandro;
Silveira, Amanda Bortolini;
Mayhew, George F.;
LeBlanc, Chantal;
Martienssen, Robert A.;
Jeddeloh, Jeffrey A.;
Colot, Vincent

Publication type:

Article

Mutation discovery in the mouse using genetically guided array capture and resequencing.

Published in:

Mammalian Genome, 2009, v. 20, n. 7, p. 424, doi. 10.1007/s00335-009-9200-y

By:

D'Ascenzo, Mark;
Meacham, Carl;
Kitzman, Jacob;
Middle, Christina;
Knight, Jim;
Winer, Roger;
Kukricar, Miroslav;
Richmond, Todd;
Albert, Thomas J.;
Czechanski, Anne;
Donahue, Leah Rae;
Affourtit, Jason;
Jeddeloh, Jeffrey A.;
Reinholdt, Laura

Publication type:

Article

Targeted RNA sequencing reveals the deep complexity of the human transcriptome.

Published in:

Nature Biotechnology, 2012, v. 30, n. 1, p. 99, doi. 10.1038/nbt.2024

By:

Mercer, Tim R;
Gerhardt, Daniel J;
Dinger, Marcel E;
Crawford, Joanna;
Trapnell, Cole;
Jeddeloh, Jeffrey A;
Mattick, John S;
Rinn, John L

Publication type:

Article

Works matching AU Jeddeloh, Jeffrey A

Sorghum Genome Sequencing by Methylation Filtration.

Sorghum Genome Sequencing by Methylation Filtration.

Fluorescence in situ hybridization with high-complexity repeat-free oligonucleotide probes generated by massively parallel synthesis.

Extreme-phenotype genome-wide association study ( XP- GWAS): a method for identifying trait-associated variants by sequencing pools of individuals selected from a diversity panel.

Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum.

RNA:DNA hybrids in the human genome have distinctive nucleotide characteristics, chromatin composition, and transcriptional relationships.

Changes in genome content generated via segregation of non-allelic homologs.

Repeat subtraction-mediated sequence capture from a complex genome.

Maintenance of genomic methylation requires a SWI2/SNF2-like protein.

Maize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content.

Genetic Perturbation of the Maize Methylome.

<sup>m</sup>CCG methylation in angiosperms.

Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum.

Structural Variants in the Soybean Genome Localize to Clusters of Biotic Stress-Response Genes<sup>1[W][OA]</sup>.

B73-Mo17 Near-Isogenic Lines Demonstrate Dispersed Structural Variation in Maize<sup>1[W][OA]</sup>.

Phenotypic and Genomic Analyses of a Fast Neutron Mutant Population Resource in Soybean.

The Composition and Origins of Genomic Variation among Individuals of the Soybean Reference Cultivar Williams 82.

A comprehensive resequence analysis of the KLK15–KLK3–KLK2 locus on chromosome 19q13.33.

Post-conversion targeted capture of modified cytosines in mammalian and plant genomes.

An ENU mutagenesis screen identifies novel and known genes involved in epigenetic processes in the mouse.

Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome.

Arabidopsis MET1 Cytosine Methyltransferase Mutants.

Targeted re-sequencing of the allohexaploid wheat exome.

Somatic retrotransposition alters the genetic landscape of the human brain.

The Arabidopsis thaliana mobilome and its impact at the species level.

Mutation discovery in the mouse using genetically guided array capture and resequencing.

Targeted RNA sequencing reveals the deep complexity of the human transcriptome.