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Building genomic infrastructure: Sequencing platinum‐standard reference‐quality genomes of all cetacean species.
- Published in:
- Marine Mammal Science, 2020, v. 36, n. 4, p. 1356, doi. 10.1111/mms.12721
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- Article
False gene and chromosome losses in genome assemblies caused by GC content variation and repeats.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02765-0
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- Article
Widespread false gene gains caused by duplication errors in genome assemblies.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02764-1
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- Article
Avian Binocularity and Adaptation to Nocturnal Environments: Genomic Insights from a Highly Derived Visual Phenotype.
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- Genome Biology & Evolution, 2019, v. 11, n. 8, p. 2244, doi. 10.1093/gbe/evz111
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- Article
Novel Insights into Chromosome Evolution in Birds, Archosaurs, and Reptiles.
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- Genome Biology & Evolution, 2016, v. 8, n. 8, p. 2442, doi. 10.1093/gbe/evw166
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- Article
Whole-Genome Identification, Phylogeny, and Evolution of the Cytochrome P450 Family 2 (CYP2) Subfamilies in Birds.
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- Genome Biology & Evolution, 2016, v. 8, n. 4, p. 1115, doi. 10.1093/gbe/evw041
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- Article
A Relationship between the Characteristics of the Oval Nucleus of the Mesopallium and Parrot Vocal Response to Playback.
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- Brain, Behavior & Evolution, 2021, v. 96, n. 1, p. 37, doi. 10.1159/000517489
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- Article
NSF Workshop Report: Discovering General Principles of Nervous System Organization by Comparing Brain Maps across Species.
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- Brain, Behavior & Evolution, 2014, v. 83, n. 1, p. 1, doi. 10.1159/000360152
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- Article
Social Context-Dependent Singing-Regulated Dopamine.
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- Journal of Neuroscience, 2006, v. 26, n. 35, p. 9010, doi. 10.1523/jneurosci.1335-06.2006
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- Article
Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds.
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- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1924-3
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- Article
Genomic resources for the endangered Hawaiian honeycreepers.
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- BMC Genomics, 2014, v. 15, n. 1, p. 1167, doi. 10.1186/1471-2164-15-1098
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- Article
Comparative genomics reveals molecular features unique to the songbird lineage.
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- BMC Genomics, 2014, v. 15, n. 1, p. 693, doi. 10.1186/1471-2164-15-1082
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- Article
Reconstruction of gross avian genome structure, organization and evolution suggests that the chicken lineage most closely resembles the dinosaur avian ancestor.
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- BMC Genomics, 2014, v. 15, n. 1, p. 39, doi. 10.1186/1471-2164-15-1060
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- Article
Genetic Structure and DNA Sequences at Junctions Involved in the Rearrangements of Bacillus subtilis Strains Carrying the trpE26 Mutation.
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- Genetics, 1990, v. 126, n. 4, p. 785
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- Article
Chromosomal Organization of rRNA Operons in Bacillus subtilis.
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- Genetics, 1988, v. 120, n. 3, p. 625
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- Article
The Vertebrate TLR Supergene Family Evolved Dynamically by Gene Gain/Loss and Positive Selection Revealing a Host–Pathogen Arms Race in Birds.
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- Diversity (14242818), 2019, v. 11, n. 8, p. 131, doi. 10.3390/d11080131
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- Article
Rapid Behavioral and Genomic Responses to Social Opportunity.
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- PLoS Biology, 2005, v. 3, n. 11, p. 1996, doi. 10.1371/journal.pbio.0030363
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- Article
Rapid Behavioral and Genomic Responses to Social Opportunity.
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- PLoS Biology, 2005, v. 3, n. 10, p. 1, doi. 10.1371/journal.pbio.0030363
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- Article
Comparative genomics based on massive parallel transcriptome sequencing reveals patterns of substitution and selection across 10 bird species.
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- Molecular Ecology, 2010, v. 19, p. 266, doi. 10.1111/j.1365-294X.2009.04487.x
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- Article
The basal ganglia within a cognitive system in birds and mammals.
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- Behavioral & Brain Sciences, 2014, v. 37, n. 6, p. 568, doi. 10.1017/S0140525X13004160
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- Article
Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition.
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- Genome Biology, 2014, v. 15, n. 12, p. 120, doi. 10.1186/s13059-014-0549-1
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- Article
Low frequency of paleoviral infiltration across the avian phylogeny.
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- Genome Biology, 2014, v. 15, n. 12, p. 33, doi. 10.1186/s13059-014-0539-3
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- Article
Night-time neuronal activation of Cluster N in a day- and night-migrating songbird.
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- European Journal of Neuroscience, 2010, v. 32, n. 4, p. 619, doi. 10.1111/j.1460-9568.2010.07311.x
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- Article
Early onset of deafening-induced song deterioration and differential requirements of the pallial-basal ganglia vocal pathway.
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- European Journal of Neuroscience, 2008, v. 28, n. 12, p. 2519, doi. 10.1111/j.1460-9568.2008.06535.x
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- Article
Profiling of experience-regulated proteins in the songbird auditory forebrain using quantitative proteomics.
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- European Journal of Neuroscience, 2008, v. 27, n. 6, p. 1409, doi. 10.1111/j.1460-9568.2008.06102.x
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- Article
Identification of dopamine receptors across the extant avian family tree and analysis with other clades uncovers a polyploid expansion among vertebrates.
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- Frontiers in Neuroscience, 2015, v. 9, p. 1, doi. 10.3389/fnins.2015.00361
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- Article
Computational Inference of Neural Information Flow Networks.
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- PLoS Computational Biology, 2006, v. 2, n. 11, p. 1436, doi. 10.1371/journal.pcbi.0020161
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- Article
Gfastats: conversion, evaluation and manipulation of genome sequences using assembly graphs.
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- Bioinformatics, 2022, v. 38, n. 17, p. 4214, doi. 10.1093/bioinformatics/btac460
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- Article
Learned Birdsong and the Neurobiology of Human Language.
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- Annals of the New York Academy of Sciences, 2004, v. 1016, n. 1, p. 749, doi. 10.1196/annals.1298.038
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- Article
Songbirds and the Revised Avian Brain Nomenclature.
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- Annals of the New York Academy of Sciences, 2004, v. 1016, n. 1, p. 77, doi. 10.1196/annals.1298.013
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- Article
The genome of a songbird.
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- Nature, 2010, v. 464, n. 7289, p. 757, doi. 10.1038/nature08819
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- Article
Advances to Bayesian network inference for generating causal networks from observational biological data.
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- Bioinformatics, 2004, v. 20, n. 18, p. 3594
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- Article
Evaluating functional network inference using simulations of complex biological systems.
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- Bioinformatics, 2002, v. 18, p. S216, doi. 10.1093/bioinformatics/18.suppl_1.S216
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- Article
Response to Matsuyama and Matsushita's MicroCorrespondence regarding our paper ‘Classification and genetic characterization of pattern-forming Bacilli’ Mol Microbiol (1998) 27: 687–703.
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- Molecular Microbiology, 1999, v. 31, n. 4, p. 1279, doi. 10.1046/j.1365-2958.1999.01259.x
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- Article
Classification and genetic characterization of pattern-forming Bacilli.
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- Molecular Microbiology, 1998, v. 27, n. 4, p. 687, doi. 10.1046/j.1365-2958.1998.00717.x
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- Article
Balanced imitation sustains song culture in zebra finches.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22852-3
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- Article
Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-020-20536-y
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- Article
Empowering 21st Century Biology.
- Published in:
- BioScience, 2010, v. 60, n. 11, p. 923, doi. 10.1525/bio.2010.60.11.8
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- Article
Convergent differential regulation of SLIT-ROBO axon guidance genes in the brains of vocal learners.
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- Journal of Comparative Neurology, 2015, v. 523, n. 6, p. 892, doi. 10.1002/cne.23719
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- Article
NSF workshop report: Discovering general principles of nervous system organization by comparing brain maps across species.
- Published in:
- Journal of Comparative Neurology, 2014, v. 522, n. 7, p. 1445, doi. 10.1002/cne.23568
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- Article
Global view of the functional molecular organization of the avian cerebrum: Mirror images and functional columns.
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- Journal of Comparative Neurology, 2013, v. 521, n. 16, p. 3614, doi. 10.1002/cne.23404
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- Article
Global view of the functional molecular organization of the avian cerebrum: mirror images and functional columns.
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- Journal of Comparative Neurology, 2013, v. 521, n. 16, p. Spc1, doi. 10.1002/cne.23462
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- Article
Molecular profiling of the developing avian telencephalon: Regional timing and brain subdivision continuities.
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- Journal of Comparative Neurology, 2013, v. 521, n. 16, p. 3666, doi. 10.1002/cne.23406
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- Article
Bone-associated gene evolution and the origin of flight in birds.
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- BMC Genomics, 2016, v. 17, p. 2, doi. 10.1186/s12864-016-2681-7
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- Article
A high-quality, long-read genome assembly of the endangered ring-tailed lemur (Lemur catta).
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- GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac026
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- Article
high-quality genome and comparison of short- versus long-read transcriptome of the palaearctic duck Aythya fuligula (tufted duck).
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- GigaScience, 2021, v. 10, n. 12, p. 1, doi. 10.1093/gigascience/giab081
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A new duck genome reveals conserved and convergently evolved chromosome architectures of birds and mammals.
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- GigaScience, 2021, v. 10, n. 1, p. 1, doi. 10.1093/gigascience/giaa142
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- Article
De novo PacBio long-read and phased avian genome assemblies correct and add to reference genes generated with intermediate and short reads.
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- GigaScience, 2017, v. 6, n. 10, p. 1, doi. 10.1093/gigascience/gix085
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- Article
Core and Shell Song Systems Unique to the Parrot Brain.
- Published in:
- PLoS ONE, 2015, v. 10, n. 6, p. 1, doi. 10.1371/journal.pone.0118496
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- Article
Evolutionary Genomics and Adaptive Evolution of the Hedgehog Gene Family (Shh, Ihh and Dhh) in Vertebrates.
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- PLoS ONE, 2014, v. 9, n. 12, p. 1, doi. 10.1371/journal.pone.0074132
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- Article