Works by Jansen, Ritsert C.

Results: 61

Errors in genomics and proteomics.
Published in:
Nature Biotechnology, 2002, v. 20, n. 1, p. 19, doi. 10.1038/nbt0102-19b
By:
- Jansen, Ritsert C.;
- Nap, Jan-Peter;
- Mlynárová, Ludmila
Publication type:
Article
Pheno2Geno - High-throughput generation of genetic markers and maps from molecular phenotypes for crosses between inbred strains.
Published in:
BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0475-6
By:
- Zych, Konrad;
- Yang Li;
- van der Velde, Joeri K.;
- Joosen, Ronny V. L.;
- Ligterink, Wilco;
- Jansen, Ritsert C.;
- Arends, Danny
Publication type:
Article
Pheno2Geno - High-throughput generation of genetic markers and maps from molecular phenotypes for crosses between inbred strains.
Published in:
BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0475-6
By:
- Zych, Konrad;
- Yang Li;
- van der Velde, Joeri K.;
- Joosen, Ronny V. L.;
- Ligterink, Wilco;
- Jansen, Ritsert C.;
- Arends, Danny
Publication type:
Article
The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button.
Published in:
BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S12-S12
By:
- Swertz, Morris A.;
- Dijkstra, Martijn;
- Adamusiak, Tomasz;
- van der Velde, Joeri K.;
- Kanterakis, Alexandros;
- Roos, Erik T.;
- Lops, Joris;
- Thorisson, Gudmundur A.;
- Arends, Danny;
- Byelas, George;
- Muilu, Juha;
- Brookes, Anthony J.;
- de Brock, Engbert O.;
- Jansen, Ritsert C.;
- Parkinson, Helen
Publication type:
Article
DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules.
Published in:
BMC Bioinformatics, 2010, v. 11, p. 497, doi. 10.1186/1471-2105-11-497
By:
- Tesson, Bruno M.;
- Breitling, Rainer;
- Jansen, Ritsert C.
Publication type:
Article
R/parallel -- speeding up bioinformatics analysis with R.
Published in:
BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-390
By:
- Vera, Gonzalo;
- Jansen, Ritsert C.;
- Suppi, Remo L.
Publication type:
Article
A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.
Published in:
BMC Bioinformatics, 2007, v. 8, p. 132, doi. 10.1186/1471-2105-8-132
By:
- Alberts, Rudi;
- Terpstra, Peter;
- Hardonk, Menno;
- Bystrykh, Leonid V;
- de Haan, Gerald;
- Breitling, Rainer;
- Nap, Jan-Peter;
- Jansen, Ritsert C
Publication type:
Article
QTL analysis of seed dormancy in Arabidopsis using recombinant inbred lines and MQM mapping.
Published in:
Heredity, 1997, v. 79, n. 2, p. 190, doi. 10.1038/sj.hdy.6881880
By:
- SCHAAR, WYBE VAN DER;
- ALONSO-BLANCO, CARLOS;
- LÉON-KLOOSTERZIEL, KAREN M;
- JANSEN, RITSERT C;
- VAN OOIJEN, JOHAN W;
- KOORNNEEF, MAARTEN
Publication type:
Article
Big data, but are we ready?
Published in:
2011
By:
- Trelles, Oswaldo;
- Prins, Pjotr;
- Snir, Marc;
- Jansen, Ritsert C.
Publication type:
Letter
Epigenome dynamics: a quantitative genetics perspective.
Published in:
2008
By:
- Johannes, Frank;
- Colot, Vincent;
- Jansen, Ritsert C.
Publication type:
research
Beyond standardization: dynamic software infrastructures for systems biology.
Published in:
Nature Reviews Genetics, 2007, v. 8, n. 3, p. 235, doi. 10.1038/nrg2048
By:
- Swertz, Morris A.;
- Jansen, Ritsert C.
Publication type:
Article
Opinion: Studying complex biological systems using multifactorial perturbation.
Published in:
Nature Reviews Genetics, 2003, v. 4, n. 2, p. 145, doi. 10.1038/nrg996
By:
- Jansen, Ritsert C.
Publication type:
Article
Optimal analysis of complex protein mass spectra.
Published in:
Proteomics, 2009, v. 9, n. 15, p. 3869, doi. 10.1002/pmic.200701064
By:
- Dijkstra, Martijn;
- Jansen, Ritsert C.
Publication type:
Article
Increasing the mass accuracy of high-resolution LC-MS data using background ions - a case study on the LTQ-Orbitrap.
Published in:
Proteomics, 2008, v. 8, n. 22, p. 4647, doi. 10.1002/pmic.200800314
By:
- Scheltema, Richard A.;
- Kamleh, Anas;
- Wildridge, David;
- Ebikeme, Charles;
- Watson, David G.;
- Barrett, Michael P.;
- Jansen, Ritsert C.;
- Breitling, Rainer
Publication type:
Article
Peak quantification in surface-enhanced laser desorption/ionization by using mixture models.
Published in:
Proteomics, 2006, v. 6, n. 19, p. 5106, doi. 10.1002/pmic.200600181
By:
- Martijn Dijkstra;
- Han Roelofsen;
- Roel J. Vonk;
- Ritsert C. Jansen
Publication type:
Article
Long term lily scale bulblet storage: effects of temperature and storage in polyethylene bags.
Published in:
Annals of Applied Biology, 1996, v. 129, n. 1, p. 161, doi. 10.1111/j.1744-7348.1996.tb05740.x
By:
- BONNIER, FRANS J M;
- JANSEN, RITSERT C;
- TUYL, JAAP M VAN
Publication type:
Article
Bioinformatics tools and database resources for systems genetics analysis in mice—a short review and an evaluation of future needs.
Published in:
Briefings in Bioinformatics, 2012, v. 13, n. 2, p. 135, doi. 10.1093/bib/bbr026
By:
- Durrant, Caroline;
- Swertz, Morris A.;
- Alberts, Rudi;
- Arends, Danny;
- Möller, Steffen;
- Mott, Richard;
- Prins, Pjotr;
- van der Velde, K. Joeri;
- Jansen, Ritsert C.;
- Schughart, Klaus
Publication type:
Article
Genome-Wide Association Study Identifies Novel Loci Associated with Circulating Phospho- and Sphingolipid Concentrations.
Published in:
PLoS Genetics, 2012, v. 8, n. 2, p. 1, doi. 10.1371/journal.pgen.1002490
By:
- van Duijn, Cornelia M.;
- Ugocsai, Peter;
- Isaacs, Aaron;
- Pramstaller, Peter P.;
- Liebisch, Gerhard;
- Wilson, James F.;
- Johansson, Åsa;
- Rudan, Igor;
- Aulchenko, Yurii S.;
- Kirichenko, Anatoly V.;
- Janssens, A. Cecile J. W.;
- Jansen, Ritsert C.;
- Gnewuch, Carsten;
- Domingues, Francisco S.;
- Pattaro, Cristian;
- Wild, Sarah H.;
- Jonasson, Inger;
- Polasek, Ozren;
- Zorkoltseva, Irina V.;
- Hofman, Albert
Publication type:
Article
Unraveling the Regulatory Mechanisms Underlying Tissue-Dependent Genetic Variation of Gene Expression.
Published in:
PLoS Genetics, 2012, v. 8, n. 1, p. 1, doi. 10.1371/journal.pgen.1002431
By:
- Jingyuan Fu;
- Wolfs, Marcel G. M.;
- Deelen, Patrick;
- Westra, Harm-Jan;
- Fehrmann, Rudolf S. N.;
- Te Meerman, Gerard J.;
- Buurman, Wim A.;
- Rensen, Sander S. M.;
- Groen, Harry J. M.;
- Weersma, Rinse K.;
- Van den Berg, Leonard H.;
- Veldink, Jan;
- Ophoff, Roel A.;
- Snieder, Harold;
- van Heel, David;
- Jansen, Ritsert C.;
- Hofker, Marten H.;
- Wijmenga, Cisca;
- Franke, Lude
Publication type:
Article
Trans-eQTLs Reveal That Independent Genetic Variants Associated with a Complex Phenotype Converge on Intermediate Genes, with a Major Role for the HLA.
Published in:
PLoS Genetics, 2011, v. 7, n. 8, p. 1, doi. 10.1371/journal.pgen.1002197
By:
- Fehrmann, Rudolf S. N.;
- Jansen, Ritsert C.;
- Veldink, Jan H.;
- Westra, Harm-Jan;
- Arends, Danny;
- Bonder, Marc Jan;
- Fu, Jingyuan;
- Deelen, Patrick;
- Groen, Harry J. M.;
- Smolonska, Asia;
- Weersma, Rinse K.;
- Hofstra, Robert M. W.;
- Buurman, Wim A.;
- Rensen, Sander;
- Wolfs, Marcel G. M.;
- Platteel, Mathieu;
- Zhernakova, Alexandra;
- Elbers, Clara C.;
- Festen, Eleanora M.;
- Trynka, Gosia
Publication type:
Article
Expression Quantitative Trait Loci Are Highly Sensitive to Cellular Differentiation State.
Published in:
PLoS Genetics, 2009, v. 5, n. 10, p. 1, doi. 10.1371/journal.pgen.1000692
By:
- Gerrits, Alice;
- Yang Li;
- Tesson, Bruno M.;
- Bystrykh, Leonid V.;
- Weersing, Ellen;
- Ausema, Albertina;
- Dontje, Bert;
- Xusheng Wang;
- Breitling, Rainer;
- Jansen, Ritsert C.;
- de Haan, Gerald
Publication type:
Article
Genetical Genomics: Spotlight on QTL Hotspots.
Published in:
2008
By:
- Breitling, Rainer;
- Yang Li;
- Tesson, Bruno M.;
- Jingyuan Fu;
- Chunlei Wu;
- Wiltshire, Tim;
- Gerrits, Alice;
- Bystrykh, Leonid V.;
- de Haan, Gerald;
- Su, Andrew I.;
- Ritsert C. Jansen
Publication type:
Opinion
Mapping Determinants of Gene Expression Plasticity by Genetical Genomics in C. elegans.
Published in:
PLoS Genetics, 2006, v. 3, n. 6, p. 2155, doi. 10.1371/journal.pgen.0020222
By:
- Yang Li;
- Álvarez, Olga Alda;
- Gutteling, Evert W.;
- Tijsterman, Marcel;
- Jingyuan Fu;
- Riksen, Joost A. G.;
- Hazendonk, Esther;
- Prins, Pjotr;
- Plasterk, Ronald H. A.;
- Jansen, Ritsert C.;
- Breitling, Rainer;
- Kammenga, Jan E.
Publication type:
Article
A view from the clinic – Perspectives from Dutch patients and professionals on high myopia care.
Published in:
Ophthalmic & Physiological Optics, 2023, v. 43, n. 3, p. 327, doi. 10.1111/opo.13091
By:
- Ravenstijn, Monica;
- du Bois, Gerlof;
- Jansen, Ritsert C.;
- Liu, Chang;
- Luyten, Gregorius P. M.;
- van Leeuwen, Redmer;
- Dickman, Mor M.;
- Reus, Nic J.;
- Yzer, Suzanne;
- Klaver, Caroline C. W.
Publication type:
Article
Quantile-Based Permutation Thresholds for Quantitative Trait Loci Hotspots.
Published in:
Genetics, 2012, v. 191, n. 4, p. 1355, doi. 10.1534/genetics.112.139451
By:
- Neto, Elias Chaibub;
- Keller, Mark P.;
- Broman, Andrew F.;
- Attie, Alan D.;
- Jansen, Ritsert C.;
- Broman, Karl W.;
- Yandell, Brian S.
Publication type:
Article
Genome-Wide Epigenetic Perturbation Jump-Starts Patterns of Heritable Variation Found in Nature.
Published in:
Genetics, 2011, v. 188, n. 4, p. 1015, doi. 10.1534/genetics.111.128744
By:
- Roux, Fabrice;
- Colomé-Tatché, Maria;
- Edelist, Cécile;
- Wardenaar, René;
- Guerche, Philippe;
- Hospital, Frédéric;
- Colot, Vincent;
- Jansen, Ritsert C.;
- Johannes, Frank
Publication type:
Article
Optimal Design of Genetic Studies of Gene Expression With Two-Color Microarrays in Outbred Crosses.
Published in:
Genetics, 2008, v. 180, n. 3, p. 1691, doi. 10.1534/genetics.108.090308
By:
- Lam, Alex C.;
- Jingyuan Fu;
- Jansen, Ritsert C.;
- Haley, Chris S.;
- de Koning, Dirk-Jan
Publication type:
Article
Optimal Design and Analysis of Genetic Studies on Gene Expression.
Published in:
Genetics, 2006, v. 172, n. 3, p. 1993, doi. 10.1534/genetics.105.047001
By:
- Jingyuan Fu;
- Jansen, Ritsert C.
Publication type:
Article
A Statistical Multiprobe Model for Analyzing cis and trans Genes in Genetical Genomics Experiments With Short-Oligonucleotide Arrays.
Published in:
Genetics, 2005, v. 171, n. 3, p. 1437, doi. 10.1534/genetics.105.045930
By:
- Alberts, Rudi;
- Terpstra, Peter;
- Bystrykh, Leonid V.;
- de Haan, Gerald;
- Jansen, Ritsert C.
Publication type:
Article
A Penalized Likelihood Method for Mapping Epistatic Quantitative Trait Loci With One-Dimensional Genome Searches.
Published in:
Genetics, 2002, v. 162, n. 2, p. 951, doi. 10.1093/genetics/162.2.951
By:
- Boer, Martin P.;
- Braak, Cajo J.F. ter;
- Jansen, Ritsert C.
Publication type:
Article
Assembly of Two Transgenes in an Artificial Chromatin Domain Gives Highly Coordinated Expression in Tobacco.
Published in:
Genetics, 2002, v. 160, n. 2, p. 727, doi. 10.1093/genetics/160.2.727
By:
- Mlynàrovà, Ludmila;
- Loonen, Annelies;
- Mietkiewska, Elzbieta;
- Jansen, Ritsert C.;
- Nap, Jan-Peter
Publication type:
Article
A Comment on Codominant Scoring of AFLP Markers.
Published in:
Genetics, 2001, v. 158, n. 2, p. 925, doi. 10.1093/genetics/158.2.925
By:
- Jansen, Ritsert C.;
- Geerlings, Henk;
- Van Oeveren, A. Jan;
- Van Schaik, René C.
Publication type:
Article
A mixture model approach to the mapping of quantitative trait loci in complex populations with...
Published in:
Genetics, 1998, v. 148, n. 1, p. 391, doi. 10.1093/genetics/148.1.391
By:
- Jansen, Ritsert C.;
- Johnson, David L.;
- Van Arendonk, Johan A.M.
Publication type:
Article
A general Monte Carlo method for mapping multiple...
Published in:
Genetics, 1996, v. 142, n. 1, p. 305, doi. 10.1093/genetics/142.1.305
By:
- Jansen, Ritsert C.
Publication type:
Article
Controlling the type I and type II errors in mapping quantitative trait loci.
Published in:
Genetics, 1994, v. 138, n. 3, p. 871, doi. 10.1093/genetics/138.3.871
By:
- Jansen, Ritsert C.
Publication type:
Article
High resolution of quantitative traits into multiple loci via interval mapping.
Published in:
Genetics, 1994, v. 136, n. 4, p. 1447, doi. 10.1093/genetics/136.4.1447
By:
- Jansen, Ritsert C.;
- Stam, Piet
Publication type:
Article
Interval mapping of multiple quantitative trait loci.
Published in:
Genetics, 1993, v. 135, n. 1, p. 205, doi. 10.1093/genetics/135.1.205
By:
- Jansen, Ritsert C.
Publication type:
Article
reGenotyper: Detecting mislabeled samples in genetic data.
Published in:
PLoS ONE, 2017, v. 12, n. 2, p. 1, doi. 10.1371/journal.pone.0171324
By:
- Zych, Konrad;
- Snoek, Basten L.;
- Elvin, Mark;
- Rodriguez, Miriam;
- Van der Velde, K. Joeri;
- Arends, Danny;
- Westra, Harm-Jan;
- Swertz, Morris A.;
- Poulin, Gino;
- Kammenga, Jan E.;
- Breitling, Rainer;
- Jansen, Ritsert C.;
- Li, Yang
Publication type:
Article
Gene expression analysis identifies global gene dosage sensitivity in cancer.
Published in:
Nature Genetics, 2015, v. 47, n. 2, p. 115, doi. 10.1038/ng.3173
By:
- Fehrmann, Rudolf S N;
- Simeonov, Anton;
- Wijmenga, Cisca;
- Franke, Lude;
- Krajewska, Małgorzata;
- Hirschhorn, Joel N;
- Schultes, Erik A;
- van Haagen, Herman H H B M;
- Westra, Harm-Jan;
- te Meerman, Gerard J;
- Maloney, David;
- Jansen, Ritsert C;
- Karjalainen, Juha M;
- de Vries, Elisabeth G E;
- van Vugt, Marcel A T M;
- Pers, Tune H
Publication type:
Article
System-wide molecular evidence for phenotypic buffering in Arabidopsis.
Published in:
Nature Genetics, 2009, v. 41, n. 2, p. 166, doi. 10.1038/ng.308
By:
- Jingyuan Fu;
- Keurentjes, Joost J. B.;
- Bouwmeester, Harro;
- America, Twan;
- Verstappen, Francel W. A.;
- Ward, Jane L.;
- Beale, Michael H.;
- de Vos, Ric C. H.;
- Dijkstra, Martijn;
- Scheltema, Richard A.;
- Johannes, Frank;
- Koornneef, Maarten;
- Vreugdenhil, Dick;
- Breitling, Rainer;
- Jansen, Ritsert C.
Publication type:
Article
The genetics of plant metabolism.
Published in:
Nature Genetics, 2006, v. 38, n. 7, p. 842, doi. 10.1038/ng1815
By:
- Keurentjes, Joost J. B.;
- Jingyuan Fu;
- de Vos, C. H. Ric;
- Lommen, Arjen;
- Hall, Robert D.;
- Bino, Raoul J.;
- van der Plas, Linus H. W.;
- Jansen, Ritsert C.;
- Vreugdenhil, Dick;
- Koornneef, Maarten
Publication type:
Article
Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'.
Published in:
Nature Genetics, 2005, v. 37, n. 3, p. 225, doi. 10.1038/ng1497
By:
- Bystrykh, Leonid;
- Weersing, Ellen;
- Dontje, Bert;
- Sutton, Sue;
- Pletcher, Mathew T;
- Wiltshire, Tim;
- Su, Andrew I;
- Vellenga, Edo;
- Wang, Jintao;
- Manly, Kenneth F;
- Lu, Lu;
- Chesler, Elissa J;
- Alberts, Rudi;
- Jansen, Ritsert C;
- Williams, Robert W;
- Cooke, Michael P;
- de Haan, Gerald
Publication type:
Article
xQTL workbench: a scalable web environment for multi-level QTL analysis.
Published in:
Bioinformatics, 2012, v. 28, n. 7, p. 1042, doi. 10.1093/bioinformatics/bts049
By:
- Arends, Danny;
- van der Velde, K. Joeri;
- Prins, Pjotr;
- Broman, Karl W.;
- Möller, Steffen;
- Jansen, Ritsert C.;
- Swertz, Morris A.
Publication type:
Article
MixupMapper: correcting sample mix-ups in genome-wide datasets increases power to detect small genetic effects.
Published in:
Bioinformatics, 2011, v. 27, n. 15, p. 2104, doi. 10.1093/bioinformatics/btr323
By:
- Westra, Harm-Jan;
- Jansen, Ritsert C.;
- Fehrmann, Rudolf S. N.;
- te Meerman, Gerard J.;
- van Heel, David;
- Wijmenga, Cisca;
- Franke, Lude
Publication type:
Article
R/qtl: high-throughput multiple QTL mapping.
Published in:
Bioinformatics, 2010, v. 26, n. 23, p. 2990, doi. 10.1093/bioinformatics/btq565
By:
- Arends, Danny;
- Prins, Pjotr;
- Jansen, Ritsert C.;
- Broman, Karl W.
Publication type:
Article
Comparing genome-wide chromatin profiles using ChIP-chip or ChIP-seq.
Published in:
Bioinformatics, 2010, v. 26, n. 8, p. 1000, doi. 10.1093/bioinformatics/btq087
By:
- Johannes, Frank;
- Wardenaar, René;
- Colomé-Tatché, Maria;
- Mousson, Florence;
- De Graaf, Petra;
- Mokry, Michal;
- Guryev, Victor;
- Timmers, H.Th. Marc;
- Cuppen, Edwin;
- Jansen, Ritsert C.
Publication type:
Article
affyGG: computational protocols for genetical genomics with Affymetrix arrays.
Published in:
Bioinformatics, 2008, v. 24, n. 3, p. 433, doi. 10.1093/bioinformatics/btm614
By:
- Rudi Alberts;
- Gonzalo Vera;
- Ritsert C. Jansen
Publication type:
Article
Molecular Genetics Information System (MOLGENIS): alternatives in developing local experimental genomics databases.
Published in:
Bioinformatics, 2004, v. 20, n. 13, p. 2075, doi. 10.1093/bioinformatics/bth206
By:
- Morris A. Swertz;
- E. O. (Bert) de Brock;
- Sacha A. F. T. van Hijum;
- Anne de Jong;
- Girbe Buist;
- Richard J. S. Baerends;
- Jan Kok;
- Oscar P. Kuipers;
- Ritsert C. Jansen
Publication type:
Article
Genome-wide methylation profiling identifies hypermethylated biomarkers in high-grade cervical intraepithelial neoplasia.
Published in:
Epigenetics, 2012, v. 7, n. 11, p. 1268, doi. 10.4161/epi.22301
By:
- Lendvai, Ágnes;
- Johannes, Frank;
- Grimm, Christina;
- Eijsink, Jasper J. H.;
- Wardenaar, René;
- Volders, Haukeline H.;
- Klip, Harry G.;
- Hollema, Harry;
- Jansen, Ritsert c.;
- Schuuring, Ed;
- Wisman, G. Bea A.;
- van der Zee, Ate G. J.
Publication type:
Article
Multiple Testing Issues in Discriminating Compound-Related Peaks and Chromatograms from High Frequency Noise, Spikes and Solvent-Based Noise in LC - MS Data Sets.
Published in:
Statistical Applications in Genetics & Molecular Biology, 2007, v. 6, n. 1, p. 1, doi. 10.2202/1544-6115.1295
By:
- Nyangoma, Stephen O.;
- Van Kampen, Antoine A. H. C.;
- Reijmers, Theo H.;
- Govorukhina, Natalia I.;
- Van der Zee, Ate G. J.;
- Billingham, Lucinda J.;
- Bischoff, Rainer;
- Jansen, Ritsert C.
Publication type:
Article