Works matching AU Jansen, Ritsert C

Results: 61

xQTL workbench: a scalable web environment for multi-level QTL analysis.

Published in:

Bioinformatics, 2012, v. 28, n. 7, p. 1042, doi. 10.1093/bioinformatics/bts049

By:

Arends, Danny;
van der Velde, K. Joeri;
Prins, Pjotr;
Broman, Karl W.;
Möller, Steffen;
Jansen, Ritsert C.;
Swertz, Morris A.

Publication type:

Article

MixupMapper: correcting sample mix-ups in genome-wide datasets increases power to detect small genetic effects.

Published in:

Bioinformatics, 2011, v. 27, n. 15, p. 2104, doi. 10.1093/bioinformatics/btr323

By:

Westra, Harm-Jan;
Jansen, Ritsert C.;
Fehrmann, Rudolf S. N.;
te Meerman, Gerard J.;
van Heel, David;
Wijmenga, Cisca;
Franke, Lude

Publication type:

Article

R/qtl: high-throughput multiple QTL mapping.

Published in:

Bioinformatics, 2010, v. 26, n. 23, p. 2990, doi. 10.1093/bioinformatics/btq565

By:

Arends, Danny;
Prins, Pjotr;
Jansen, Ritsert C.;
Broman, Karl W.

Publication type:

Article

Comparing genome-wide chromatin profiles using ChIP-chip or ChIP-seq.

Published in:

Bioinformatics, 2010, v. 26, n. 8, p. 1000, doi. 10.1093/bioinformatics/btq087

By:

Johannes, Frank;
Wardenaar, René;
Colomé-Tatché, Maria;
Mousson, Florence;
De Graaf, Petra;
Mokry, Michal;
Guryev, Victor;
Timmers, H.Th. Marc;
Cuppen, Edwin;
Jansen, Ritsert C.

Publication type:

Article

affyGG: computational protocols for genetical genomics with Affymetrix arrays.

Published in:

Bioinformatics, 2008, v. 24, n. 3, p. 433, doi. 10.1093/bioinformatics/btm614

By:

Rudi Alberts;
Gonzalo Vera;
Ritsert C. Jansen

Publication type:

Article

Mapping Quantitative Trait Loci in Plant Breeding Populations: Use of Parental Haplotype Sharing.

Published in:

Crop Science, 2003, v. 43, n. 3, p. 829, doi. 10.2135/cropsci2003.0829

By:

Jansen, Ritsert C.;
Jannink, Jean-Luc;
Beavis, William D.

Publication type:

Article

RNAi-induced off-target effects in Drosophila melanogaster: frequencies and solutions.

Published in:

Briefings in Functional Genomics, 2011, v. 10, n. 4, p. 206, doi. 10.1093/bfgp/elr017

By:

Seinen, Erwin;
Burgerhof, Johannes G. M.;
Jansen, Ritsert C.;
Sibon, Ody C. M.

Publication type:

Article

Gene expression analysis identifies global gene dosage sensitivity in cancer.

Published in:

Nature Genetics, 2015, v. 47, n. 2, p. 115, doi. 10.1038/ng.3173

By:

Fehrmann, Rudolf S N;
Simeonov, Anton;
Wijmenga, Cisca;
Franke, Lude;
Krajewska, Małgorzata;
Hirschhorn, Joel N;
Schultes, Erik A;
van Haagen, Herman H H B M;
Westra, Harm-Jan;
te Meerman, Gerard J;
Maloney, David;
Jansen, Ritsert C;
Karjalainen, Juha M;
de Vries, Elisabeth G E;
van Vugt, Marcel A T M;
Pers, Tune H

Publication type:

Article

System-wide molecular evidence for phenotypic buffering in Arabidopsis.

Published in:

Nature Genetics, 2009, v. 41, n. 2, p. 166, doi. 10.1038/ng.308

By:

Jingyuan Fu;
Keurentjes, Joost J. B.;
Bouwmeester, Harro;
America, Twan;
Verstappen, Francel W. A.;
Ward, Jane L.;
Beale, Michael H.;
de Vos, Ric C. H.;
Dijkstra, Martijn;
Scheltema, Richard A.;
Johannes, Frank;
Koornneef, Maarten;
Vreugdenhil, Dick;
Breitling, Rainer;
Jansen, Ritsert C.

Publication type:

Article

The genetics of plant metabolism.

Published in:

Nature Genetics, 2006, v. 38, n. 7, p. 842, doi. 10.1038/ng1815

By:

Keurentjes, Joost J. B.;
Jingyuan Fu;
de Vos, C. H. Ric;
Lommen, Arjen;
Hall, Robert D.;
Bino, Raoul J.;
van der Plas, Linus H. W.;
Jansen, Ritsert C.;
Vreugdenhil, Dick;
Koornneef, Maarten

Publication type:

Article

Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics'.

Published in:

Nature Genetics, 2005, v. 37, n. 3, p. 225, doi. 10.1038/ng1497

By:

Bystrykh, Leonid;
Weersing, Ellen;
Dontje, Bert;
Sutton, Sue;
Pletcher, Mathew T;
Wiltshire, Tim;
Su, Andrew I;
Vellenga, Edo;
Wang, Jintao;
Manly, Kenneth F;
Lu, Lu;
Chesler, Elissa J;
Alberts, Rudi;
Jansen, Ritsert C;
Williams, Robert W;
Cooke, Michael P;
de Haan, Gerald

Publication type:

Article

Molecular Genetics Information System (MOLGENIS): alternatives in developing local experimental genomics databases.

Published in:

Bioinformatics, 2004, v. 20, n. 13, p. 2075, doi. 10.1093/bioinformatics/bth206

By:

Morris A. Swertz;
E. O. (Bert) de Brock;
Sacha A. F. T. van Hijum;
Anne de Jong;
Girbe Buist;
Richard J. S. Baerends;
Jan Kok;
Oscar P. Kuipers;
Ritsert C. Jansen

Publication type:

Article

Long term lily scale bulblet storage: effects of temperature and storage in polyethylene bags.

Published in:

Annals of Applied Biology, 1996, v. 129, n. 1, p. 161, doi. 10.1111/j.1744-7348.1996.tb05740.x

By:

BONNIER, FRANS J M;
JANSEN, RITSERT C;
TUYL, JAAP M VAN

Publication type:

Article

Mapping of Gene Expression Reveals CYP27A1 as a Susceptibility Gene for Sporadic ALS.

Published in:

PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0035333

By:

Diekstra, Frank P.;
Saris, Christiaan G. J.;
Rheenen, Wouter van;
Franke, Lude;
Jansen, Ritsert C.;
van Es, Michael A.;
van Vught, Paul W. J.;
Blauw, Hylke M.;
Groen, Ewout J. N.;
Horvath, Steve;
Estrada, Karol;
Rivadeneira, Fernando;
Hofman, Albert;
Uitterlinden, Andre G.;
Robberecht, Wim;
Andersen, Peter M.;
Melki, Judith;
Meininger, Vincent;
Hardiman, Orla;
Landers, John E.

Publication type:

Article

RNAi Experiments in D. melanogaster: Solutions to the Overlooked Problem of Off-Targets Shared by Independent dsRNAs.

Published in:

PLoS ONE, 2010, v. 5, n. 10, p. 1, doi. 10.1371/journal.pone.0013119

By:

Seinen, Erwin;
Burgerhof, Johannes G. M.;
Jansen, Ritsert C.;
Sibon, Ody C. M.

Publication type:

Article

Pheno2Geno - High-throughput generation of genetic markers and maps from molecular phenotypes for crosses between inbred strains.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0475-6

By:

Zych, Konrad;
Yang Li;
van der Velde, Joeri K.;
Joosen, Ronny V. L.;
Ligterink, Wilco;
Jansen, Ritsert C.;
Arends, Danny

Publication type:

Article

Pheno2Geno - High-throughput generation of genetic markers and maps from molecular phenotypes for crosses between inbred strains.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0475-6

By:

Zych, Konrad;
Yang Li;
van der Velde, Joeri K.;
Joosen, Ronny V. L.;
Ligterink, Wilco;
Jansen, Ritsert C.;
Arends, Danny

Publication type:

Article

Multiple Testing Issues in Discriminating Compound-Related Peaks and Chromatograms from High Frequency Noise, Spikes and Solvent-Based Noise in LC - MS Data Sets.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2007, v. 6, n. 1, p. 1, doi. 10.2202/1544-6115.1295

By:

Nyangoma, Stephen O.;
Van Kampen, Antoine A. H. C.;
Reijmers, Theo H.;
Govorukhina, Natalia I.;
Van der Zee, Ate G. J.;
Billingham, Lucinda J.;
Bischoff, Rainer;
Jansen, Ritsert C.

Publication type:

Article

Peak quantification in surface-enhanced laser desorption/ionization by using mixture models.

Published in:

Proteomics, 2006, v. 6, n. 19, p. 5106, doi. 10.1002/pmic.200600181

By:

Martijn Dijkstra;
Han Roelofsen;
Roel J. Vonk;
Ritsert C. Jansen

Publication type:

Article

Quantile-Based Permutation Thresholds for Quantitative Trait Loci Hotspots.

Published in:

Genetics, 2012, v. 191, n. 4, p. 1355, doi. 10.1534/genetics.112.139451

By:

Neto, Elias Chaibub;
Keller, Mark P.;
Broman, Andrew F.;
Attie, Alan D.;
Jansen, Ritsert C.;
Broman, Karl W.;
Yandell, Brian S.

Publication type:

Article

Genome-Wide Epigenetic Perturbation Jump-Starts Patterns of Heritable Variation Found in Nature.

Published in:

Genetics, 2011, v. 188, n. 4, p. 1015, doi. 10.1534/genetics.111.128744

By:

Roux, Fabrice;
Colomé-Tatché, Maria;
Edelist, Cécile;
Wardenaar, René;
Guerche, Philippe;
Hospital, Frédéric;
Colot, Vincent;
Jansen, Ritsert C.;
Johannes, Frank

Publication type:

Article

Optimal Design of Genetic Studies of Gene Expression With Two-Color Microarrays in Outbred Crosses.

Published in:

Genetics, 2008, v. 180, n. 3, p. 1691, doi. 10.1534/genetics.108.090308

By:

Lam, Alex C.;
Jingyuan Fu;
Jansen, Ritsert C.;
Haley, Chris S.;
de Koning, Dirk-Jan

Publication type:

Article

Optimal Design and Analysis of Genetic Studies on Gene Expression.

Published in:

Genetics, 2006, v. 172, n. 3, p. 1993, doi. 10.1534/genetics.105.047001

By:

Jingyuan Fu;
Jansen, Ritsert C.

Publication type:

Article

A Statistical Multiprobe Model for Analyzing cis and trans Genes in Genetical Genomics Experiments With Short-Oligonucleotide Arrays.

Published in:

Genetics, 2005, v. 171, n. 3, p. 1437, doi. 10.1534/genetics.105.045930

By:

Alberts, Rudi;
Terpstra, Peter;
Bystrykh, Leonid V.;
de Haan, Gerald;
Jansen, Ritsert C.

Publication type:

Article

A Penalized Likelihood Method for Mapping Epistatic Quantitative Trait Loci With One-Dimensional Genome Searches.

Published in:

Genetics, 2002, v. 162, n. 2, p. 951, doi. 10.1093/genetics/162.2.951

By:

Boer, Martin P.;
Braak, Cajo J.F. ter;
Jansen, Ritsert C.

Publication type:

Article

Assembly of Two Transgenes in an Artificial Chromatin Domain Gives Highly Coordinated Expression in Tobacco.

Published in:

Genetics, 2002, v. 160, n. 2, p. 727, doi. 10.1093/genetics/160.2.727

By:

Mlynàrovà, Ludmila;
Loonen, Annelies;
Mietkiewska, Elzbieta;
Jansen, Ritsert C.;
Nap, Jan-Peter

Publication type:

Article

reGenotyper: Detecting mislabeled samples in genetic data.

Published in:

PLoS ONE, 2017, v. 12, n. 2, p. 1, doi. 10.1371/journal.pone.0171324

By:

Zych, Konrad;
Snoek, Basten L.;
Elvin, Mark;
Rodriguez, Miriam;
Van der Velde, K. Joeri;
Arends, Danny;
Westra, Harm-Jan;
Swertz, Morris A.;
Poulin, Gino;
Kammenga, Jan E.;
Breitling, Rainer;
Jansen, Ritsert C.;
Li, Yang

Publication type:

Article

Errors in genomics and proteomics.

Published in:

Nature Biotechnology, 2002, v. 20, n. 1, p. 19, doi. 10.1038/nbt0102-19b

By:

Jansen, Ritsert C.;
Nap, Jan-Peter;
Mlynárová, Ludmila

Publication type:

Article

Big data, but are we ready?

Published in:

2011

By:

Trelles, Oswaldo;
Prins, Pjotr;
Snir, Marc;
Jansen, Ritsert C.

Publication type:

Letter

Epigenome dynamics: a quantitative genetics perspective.

Published in:

2008

By:

Johannes, Frank;
Colot, Vincent;
Jansen, Ritsert C.

Publication type:

research

Beyond standardization: dynamic software infrastructures for systems biology.

Published in:

Nature Reviews Genetics, 2007, v. 8, n. 3, p. 235, doi. 10.1038/nrg2048

By:

Swertz, Morris A.;
Jansen, Ritsert C.

Publication type:

Article

Opinion: Studying complex biological systems using multifactorial perturbation.

Published in:

Nature Reviews Genetics, 2003, v. 4, n. 2, p. 145, doi. 10.1038/nrg996

By:

Jansen, Ritsert C.

Publication type:

Article

Bioinformatics tools and database resources for systems genetics analysis in mice—a short review and an evaluation of future needs.

Published in:

Briefings in Bioinformatics, 2012, v. 13, n. 2, p. 135, doi. 10.1093/bib/bbr026

By:

Durrant, Caroline;
Swertz, Morris A.;
Alberts, Rudi;
Arends, Danny;
Möller, Steffen;
Mott, Richard;
Prins, Pjotr;
van der Velde, K. Joeri;
Jansen, Ritsert C.;
Schughart, Klaus

Publication type:

Article

Combining microarrays and genetic analysis.

Published in:

Briefings in Bioinformatics, 2005, v. 6, n. 2, p. 135, doi. 10.1093/bib/6.2.135

By:

Alberts, Rudi;
Jingyuan Fu;
Swertz, Morris A.;
Lubbers, L. Alrik;
Albers, Casper J.;
Jansen, Ritsert C.

Publication type:

Article

Optimal analysis of complex protein mass spectra.

Published in:

Proteomics, 2009, v. 9, n. 15, p. 3869, doi. 10.1002/pmic.200701064

By:

Dijkstra, Martijn;
Jansen, Ritsert C.

Publication type:

Article

Increasing the mass accuracy of high-resolution LC-MS data using background ions - a case study on the LTQ-Orbitrap.

Published in:

Proteomics, 2008, v. 8, n. 22, p. 4647, doi. 10.1002/pmic.200800314

By:

Scheltema, Richard A.;
Kamleh, Anas;
Wildridge, David;
Ebikeme, Charles;
Watson, David G.;
Barrett, Michael P.;
Jansen, Ritsert C.;
Breitling, Rainer

Publication type:

Article

A Comment on Codominant Scoring of AFLP Markers.

Published in:

Genetics, 2001, v. 158, n. 2, p. 925, doi. 10.1093/genetics/158.2.925

By:

Jansen, Ritsert C.;
Geerlings, Henk;
Van Oeveren, A. Jan;
Van Schaik, René C.

Publication type:

Article

A mixture model approach to the mapping of quantitative trait loci in complex populations with...

Published in:

Genetics, 1998, v. 148, n. 1, p. 391, doi. 10.1093/genetics/148.1.391

By:

Jansen, Ritsert C.;
Johnson, David L.;
Van Arendonk, Johan A.M.

Publication type:

Article

A general Monte Carlo method for mapping multiple...

Published in:

Genetics, 1996, v. 142, n. 1, p. 305, doi. 10.1093/genetics/142.1.305

By:

Jansen, Ritsert C.

Publication type:

Article

Controlling the type I and type II errors in mapping quantitative trait loci.

Published in:

Genetics, 1994, v. 138, n. 3, p. 871, doi. 10.1093/genetics/138.3.871

By:

Jansen, Ritsert C.

Publication type:

Article

High resolution of quantitative traits into multiple loci via interval mapping.

Published in:

Genetics, 1994, v. 136, n. 4, p. 1447, doi. 10.1093/genetics/136.4.1447

By:

Jansen, Ritsert C.;
Stam, Piet

Publication type:

Article

Interval mapping of multiple quantitative trait loci.

Published in:

Genetics, 1993, v. 135, n. 1, p. 205, doi. 10.1093/genetics/135.1.205

By:

Jansen, Ritsert C.

Publication type:

Article

The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S12-S12

By:

Swertz, Morris A.;
Dijkstra, Martijn;
Adamusiak, Tomasz;
van der Velde, Joeri K.;
Kanterakis, Alexandros;
Roos, Erik T.;
Lops, Joris;
Thorisson, Gudmundur A.;
Arends, Danny;
Byelas, George;
Muilu, Juha;
Brookes, Anthony J.;
de Brock, Engbert O.;
Jansen, Ritsert C.;
Parkinson, Helen

Publication type:

Article

DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 497, doi. 10.1186/1471-2105-11-497

By:

Tesson, Bruno M.;
Breitling, Rainer;
Jansen, Ritsert C.

Publication type:

Article

R/parallel -- speeding up bioinformatics analysis with R.

Published in:

BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-390

By:

Vera, Gonzalo;
Jansen, Ritsert C.;
Suppi, Remo L.

Publication type:

Article

A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, human and rat.

Published in:

BMC Bioinformatics, 2007, v. 8, p. 132, doi. 10.1186/1471-2105-8-132

By:

Alberts, Rudi;
Terpstra, Peter;
Hardonk, Menno;
Bystrykh, Leonid V;
de Haan, Gerald;
Breitling, Rainer;
Nap, Jan-Peter;
Jansen, Ritsert C

Publication type:

Article

QTL analysis of seed dormancy in Arabidopsis using recombinant inbred lines and MQM mapping.

Published in:

Heredity, 1997, v. 79, n. 2, p. 190, doi. 10.1038/sj.hdy.6881880

By:

SCHAAR, WYBE VAN DER;
ALONSO-BLANCO, CARLOS;
LÉON-KLOOSTERZIEL, KAREN M;
JANSEN, RITSERT C;
VAN OOIJEN, JOHAN W;
KOORNNEEF, MAARTEN

Publication type:

Article

FitTetra 2.0 – improved genotype calling for tetraploids with multiple population and parental data support.

Published in:

BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2703-y

By:

Zych, Konrad;
Gort, Gerrit;
Maliepaard, Chris A.;
Jansen, Ritsert C.;
Voorrips, Roeland E.

Publication type:

Article

A view from the clinic – Perspectives from Dutch patients and professionals on high myopia care.

Published in:

Ophthalmic & Physiological Optics, 2023, v. 43, n. 3, p. 327, doi. 10.1111/opo.13091

By:

Ravenstijn, Monica;
du Bois, Gerlof;
Jansen, Ritsert C.;
Liu, Chang;
Luyten, Gregorius P. M.;
van Leeuwen, Redmer;
Dickman, Mor M.;
Reus, Nic J.;
Yzer, Suzanne;
Klaver, Caroline C. W.

Publication type:

Article

WormQTLHD—a web database for linking human disease to natural variation data in C. elegans.

Published in:

Nucleic Acids Research, 2014, v. 42, n. D1, p. D794, doi. 10.1093/nar/gkt1044

By:

van der Velde, K. Joeri;
de Haan, Mark;
Zych, Konrad;
Arends, Danny;
Snoek, L. Basten;
Kammenga, Jan E.;
Jansen, Ritsert C.;
Swertz, Morris A.;
Li, Yang

Publication type:

Article