Works matching AU JAKOBSSON, MATTIAS

Results: 64

HLA diversity and signatures of selection in the Maniq, a nomadic hunter-gatherer population in Southern Thailand.

Published in:

Immunogenetics, 2025, v. 77, n. 1, p. 1, doi. 10.1007/s00251-025-01380-0

By:

Schaschl, Helmut;
Herzog, Tobias;
Oberreiter, Victoria;
Kutanan, Wibhu;
Jakobsson, Mattias;
Larena, Maximilian

Publication type:

Article

Haplotype variation and genotype imputation in African populations.

Published in:

Genetic Epidemiology, 2011, v. 35, n. 8, p. 766, doi. 10.1002/gepi.20626

By:

Huang, Lucy;
Jakobsson, Mattias;
Pemberton, Trevor J.;
Ibrahim, Muntaser;
Nyambo, Thomas;
Omar, Sabah;
Pritchard, Jonathan K.;
Tishkoff, Sarah A.;
Rosenberg, Noah A.

Publication type:

Article

COMPASS: a program for generating serial samples under an infinite sites model.

Published in:

Bioinformatics, 2009, v. 25, n. 21, p. 2845, doi. 10.1093/bioinformatics/btp534

By:

Jakobsson, Mattias

Publication type:

Article

ADZE: a rarefaction approach for counting alleles private to combinations of populations.

Published in:

Bioinformatics, 2008, v. 24, n. 21, p. 2498, doi. 10.1093/bioinformatics/btn478

By:

Zachary A. Szpiech;
Mattias Jakobsson;
Noah A. Rosenberg

Publication type:

Article

CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure.

Published in:

Bioinformatics, 2007, v. 23, n. 14, p. 1801, doi. 10.1093/bioinformatics/btm233

By:

Mattias Jakobsson;
Noah A. Rosenberg

Publication type:

Article

Bioarchaeological evidence of one of the earliest Islamic burials in the Levant.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03508-4

By:

Srigyan, Megha;
Bolívar, Héctor;
Ureña, Irene;
Santana, Jonathan;
Petersen, Andrew;
Iriarte, Eneko;
Kırdök, Emrah;
Bergfeldt, Nora;
Mora, Alice;
Jakobsson, Mattias;
Abdo, Khaled;
Braemer, Frank;
Smith, Colin;
Ibañez, Juan José;
Götherström, Anders;
Günther, Torsten;
Valdiosera, Cristina

Publication type:

Article

Mitochondrial genomes reveal an east to west cline of steppe ancestry in Corded Ware populations.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-29914-5

By:

Juras, Anna;
Chyleński, Maciej;
Ehler, Edvard;
Malmström, Helena;
Żurkiewicz, Danuta;
Włodarczak, Piotr;
Wilk, Stanisław;
Peška, Jaroslav;
Fojtík, Pavel;
Králík, Miroslav;
Libera, Jerzy;
Bagińska, Jolanta;
Tunia, Krzysztof;
Klochko, Viktor I.;
Dabert, Miroslawa;
Jakobsson, Mattias;
Kośko, Aleksander

Publication type:

Article

Epigenomic Modifications in Modern and Ancient Genomes.

Published in:

Genes, 2022, v. 13, n. 2, p. 178, doi. 10.3390/genes13020178

By:

Niiranen, Laura;
Leciej, Dawid;
Edlund, Hanna;
Bernhardsson, Carolina;
Fraser, Magdalena;
Quinto, Federico Sánchez;
Herzig, Karl-Heinz;
Jakobsson, Mattias;
Walkowiak, Jarosław;
Thalmann, Olaf

Publication type:

Article

Mobility patterns in inland southwestern Sweden during the Neolithic and Early Bronze Age.

Published in:

Archaeological & Anthropological Sciences, 2021, v. 13, n. 4, p. 1, doi. 10.1007/s12520-021-01294-4

By:

Blank, Malou;
Sjögren, Karl-Göran;
Knipper, Corina;
Frei, Karin M;
Malmström, Helena;
Fraser, Magdalena;
Svensson, Emma M.;
Günther, Torsten;
Yngve, Hannes;
Jakobsson, Mattias;
Götherström, Anders;
Storå, Jan

Publication type:

Article

Estimating genetic kin relationships in prehistoric populations.

Published in:

PLoS ONE, 2018, v. 13, n. 3, p. 1, doi. 10.1371/journal.pone.0195491

By:

Monroy Kuhn, Jose Manuel;
Jakobsson, Mattias;
Günther, Torsten

Publication type:

Article

Evolution of chloroplast mononucleotide microsatellites in Arabidopsis thaliana.

Published in:

Theoretical & Applied Genetics, 2007, v. 114, n. 2, p. 223, doi. 10.1007/s00122-006-0425-9

By:

Jakobsson, Mattias;
Säll, Torbjörn;
Lind-Halldén, Christina;
Halldén, Christer

Publication type:

Article

A worldwide survey of haplotype variation and linkage disequilibrium in the human genome.

Published in:

Nature Genetics, 2006, v. 38, n. 11, p. 1251, doi. 10.1038/ng1911

By:

Conrad, Donald F.;
Jakobsson, Mattias;
Coop, Graham;
Xiaoquan Wen;
Wall, Jeffrey D.;
Rosenberg, Noah A.;
Pritchard, Jonathan K.

Publication type:

Article

Sequence determinants of human microsatellite variability.

Published in:

BMC Genomics, 2009, v. 10, p. 612, doi. 10.1186/1471-2164-10-612

By:

Pemberton, Trevor J.;
Sandefur, Conner I.;
Jakobsson, Mattias;
Rosenberg, Noah A.

Publication type:

Article

Evolution of cytokine production capacity in ancient and modern European populations.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.64971

By:

Domínguez-Andrés, Jorge;
Kuijpers, Yunus;
Bakker, Olivier B.;
Jaeger, Martin;
Cheng-Jian Xu;
Van der Meer, Jos W. M.;
Jakobsson, Mattias;
Bertranpetit, Jaume;
Joosten, Leo A. B.;
Yang Li;
Netea, Mihai G.

Publication type:

Article

Late Danubian mitochondrial genomes shed light into the Neolithisation of Central Europe in the 5<sup>th</sup> millennium BC.

Published in:

BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-017-0924-0

By:

Chyleński, Maciej;
Juras, Anna;
Ehler, Edvard;
Malmström, Helena;
Piontek, Janusz;
Jakobsson, Mattias;
Marciniak, Arkadiusz;
Dabert, Miroslawa

Publication type:

Article

Identification of microbial pathogens in Neolithic Scandinavian humans.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-56096-0

By:

Bergfeldt, Nora;
Kırdök, Emrah;
Oskolkov, Nikolay;
Mirabello, Claudio;
Unneberg, Per;
Malmström, Helena;
Fraser, Magdalena;
Sanchez-Quinto, Federico;
Jorgensen, Roger;
Skar, Birgitte;
Lidén, Kerstin;
Jakobsson, Mattias;
Storå, Jan;
Götherström, Anders

Publication type:

Article

Metagenomic analysis of Mesolithic chewed pitch reveals poor oral health among stone age individuals.

Published in:

Scientific Reports, 2024, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-48762-6

By:

Kırdök, Emrah;
Kashuba, Natalija;
Damlien, Hege;
Manninen, Mikael A.;
Nordqvist, Bengt;
Kjellström, Anna;
Jakobsson, Mattias;
Lindberg, A. Michael;
Storå, Jan;
Persson, Per;
Andersson, Björn;
Aravena, Andrés;
Götherström, Anders

Publication type:

Article

Microsatellite genotyping reveals end-Pleistocene decline in mammoth autosomal genetic variation.

Published in:

Molecular Ecology, 2012, v. 21, n. 14, p. 3391, doi. 10.1111/j.1365-294X.2012.05525.x

By:

NYSTRÖM, VERONICA;
HUMPHREY, JOANNE;
SKOGLUND, PONTUS;
McKEOWN, NIALL J.;
VARTANYAN, SERGEY;
SHAW, PAUL W.;
LIDÉN, KERSTIN;
JAKOBSSON, MATTIAS;
BARNES, IAN;
ANGERBJÖRN, ANDERS;
LISTER, ADRIAN;
DALÉN, LOVE

Publication type:

Article

Joint analysis of demography and selection in population genetics: where do we stand and where could we go?

Published in:

Molecular Ecology, 2012, v. 21, n. 1, p. 28, doi. 10.1111/j.1365-294X.2011.05308.x

By:

LI, JUNRUI;
LI, HAIPENG;
JAKOBSSON, MATTIAS;
LI, SEN;
SJÖDIN, PER;
LASCOUX, MARTIN

Publication type:

Article

The deep population history in Africa.

Published in:

Human Molecular Genetics, 2021, v. 30, n. R1, p. R2, doi. 10.1093/hmg/ddab005

By:

Hollfelder, Nina;
Breton, Gwenna;
Sjödin, Per;
Jakobsson, Mattias

Publication type:

Article

HaploPOP: a software that improves population assignment by combining markers into haplotypes.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0661-6

By:

Duforet-Frebourg, Nicolas;
Gattepaille, Lucie M.;
Blum, Michael G. B.;
Jakobsson, Mattias

Publication type:

Article

Comparing Spatial Maps of Human Population-Genetic Variation Using Procrustes Analysis.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2010, v. 9, n. 1, p. 1, doi. 10.2202/1544-6115.1493

By:

Chaolong Wang;
Szpiech, Zachary A.;
Degnan, James H.;
Jakobsson, Mattias;
Pemberton, Trevor J.;
Hardy, John A.;
Singleton, Andrew B.;
Rosenberg, Noah A.

Publication type:

Article

Estimating divergence times from DNA sequences.

Published in:

Genetics, 2021, v. 217, n. 4, p. 1, doi. 10.1093/genetics/iyab008

By:

Sjödin, Per;
McKenna, James;
Jakobsson, Mattias

Publication type:

Article

Inferring Past Effective Population Size from Distributions of Coalescent Times.

Published in:

Genetics, 2016, v. 204, n. 3, p. 1191, doi. 10.1534/genetics.115.185058

By:

Gattepaille, Lucie;
Günther, Torsten;
Jakobsson, Mattias

Publication type:

Article

The Relationship Between F<sub>ST</sub> and the Frequency of the Most Frequent Allele.

Published in:

Genetics, 2013, v. 193, n. 2, p. 515, doi. 10.1534/genetics.112.144758

By:

Jakobsson, Mattias;
Edge, Michael D.;
Rosenberg, Noah A.

Publication type:

Article

Combining Markers into Haplotypes Can Improve Population Structure Inference.

Published in:

Genetics, 2012, v. 190, n. 1, p. 159, doi. 10.1534/genetics.111.131136

By:

Gattepaille, Lucie M.;
Jakobsson, Mattias

Publication type:

Article

The Relationship Between Homozygosity and the Frequency of the Most Frequent Allele.

Published in:

Genetics, 2008, v. 179, n. 4, p. 2027, doi. 10.1534/genetics.107.084772

By:

Rosenberg, Noah A.;
Jakobsson, Mattias

Publication type:

Article

Possible Positive Selection for an Arsenic-Protective Haplotype in Humans.

Published in:

Environmental Health Perspectives, 2013, v. 121, n. 1, p. 53, doi. 10.1289/ehp.1205504

By:

Schlebusch, Carina M.;
Lewis Jr., Cecil M.;
Vahter, Marie;
Engström, Karin;
Tito, Raúl Y.;
Obregön-Tito, Alexandra J.;
Huerta, Doris;
Polo, Susan I.;
Medina, Ángel C.;
Brutsaert, Tom D.;
Concha, Gabriela;
Jakobsson, Mattias;
Broberg, Karin

Publication type:

Article

The Pattern of Polymorphism in Arabidopsis thaliana.

Published in:

PLoS Biology, 2005, v. 3, n. 5, p. 1, doi. 10.1371/journal.pbio.0030196

By:

Nordborg, Magnus;
Hu, Tina T;
Ishino, Yoko;
Jhaveri, Jinal;
Toomajian, Christopher;
Zheng, Honggang;
Bakker, Erica;
Calabrese, Peter;
Gladstone, Jean;
Goyal, Rana;
Jakobsson, Mattias;
Kim, Sung;
Morozov, Yuri;
Padhukasahasram, Badri;
Plagnol, Vincent;
Rosenberg, Noah A;
Shah, Chitiksha;
Wall, Jeffrey D;
Wang, Jue;
Zhao, Keyan

Publication type:

Article

Robust genome-wide ancestry inference for heterogeneous datasets: illustrated using the 1,000 genome project with 3D facial images.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-68259-w

By:

Li, Jiarui;
Zarzar, Tomás González;
White, Julie D.;
Indencleef, Karlijne;
Hoskens, Hanne;
Matthews, Harry;
Nauwelaers, Nele;
Zaidi, Arslan;
Eller, Ryan J.;
Herrick, Noah;
Günther, Torsten;
Svensson, Emma M.;
Jakobsson, Mattias;
Walsh, Susan;
Van Steen, Kristel;
Shriver, Mark D.;
Claes, Peter

Publication type:

Article

Stronger signal of recent selection for lactase persistence in Maasai than in Europeans.

Published in:

European Journal of Human Genetics, 2013, v. 21, n. 5, p. 550, doi. 10.1038/ejhg.2012.199

By:

Schlebusch, Carina M;
Sjödin, Per;
Skoglund, Pontus;
Jakobsson, Mattias

Publication type:

Article

BaTwa populations from Zambia retain ancestry of past hunter-gatherer groups.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-50733-y

By:

Breton, Gwenna;
Barham, Lawrence;
Mudenda, George;
Soodyall, Himla;
Schlebusch, Carina M.;
Jakobsson, Mattias

Publication type:

Article

Private haplotypes can reveal local adaptation.

Published in:

BMC Genetics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2156-15-61

By:

Sjöstrand, Agnès E.;
Sjödin, Per;
Jakobsson, Mattias

Publication type:

Article

Northeast African genomic variation shaped by the continuity of indigenous groups and Eurasian migrations.

Published in:

PLoS Genetics, 2017, v. 13, n. 8, p. 1, doi. 10.1371/journal.pgen.1006976

By:

Hollfelder, Nina;
Schlebusch, Carina M.;
Günther, Torsten;
Babiker, Hiba;
Hassan, Hisham Y.;
Jakobsson, Mattias

Publication type:

Article

Rickettsia felis DNA recovered from a child who lived in southern Africa 2000 years ago.

Published in:

Communications Biology, 2023, v. 6, n. 1, p. 1, doi. 10.1038/s42003-023-04582-y

By:

Rifkin, Riaan F.;
Vikram, Surendra;
Alcorta, Jaime;
Ramond, Jean-Baptiste;
Cowan, Don A.;
Jakobsson, Mattias;
Schlebusch, Carina M.;
Lombard, Marlize

Publication type:

Article

Ancient DNA HLA typing reveals significant shifts in frequency in Europe since the Neolithic.

Published in:

Scientific Reports, 2025, v. 15, n. 1, p. 1, doi. 10.1038/s41598-024-82449-w

By:

Plascencia, Alan Godínez;
Jakobsson, Mattias;
Sánchez-Quinto, Federico

Publication type:

Article

The Genetic Variation of Lactase Persistence Alleles in Sudan and South Sudan.

Published in:

Genome Biology & Evolution, 2021, v. 13, n. 5, p. 1, doi. 10.1093/gbe/evab065

By:

Hollfelder, Nina;
Babiker, Hiba;
Granehäll, Lena;
Schlebusch, Carina M;
Jakobsson, Mattias

Publication type:

Article

Y-Chromosome Variation in Southern African Khoe-San Populations Based on Whole-Genome Sequences.

Published in:

Genome Biology & Evolution, 2020, v. 12, n. 7, p. 1031, doi. 10.1093/gbe/evaa098

By:

Naidoo, Thijessen;
Xu, Jingzi;
Vicente, Mário;
Malmström, Helena;
Soodyall, Himla;
Jakobsson, Mattias;
Schlebusch, Carina M

Publication type:

Article

Comparison of sequencing data processing pipelines and application to underrepresented African human populations.

Published in:

BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04407-x

By:

Breton, Gwenna;
Johansson, Anna C. V.;
Sjödin, Per;
Schlebusch, Carina M.;
Jakobsson, Mattias

Publication type:

Article

A Unique Recent Origin of the Allotetraploid Species Arabidopsis suecica: Evidence from Nuclear DNA Markers.

Published in:

Molecular Biology & Evolution, 2006, v. 23, n. 6, p. 1217, doi. 10.1093/molbev/msk006

By:

Jakobsson, Mattias;
Hagenblad, Jenny;
Tavaré, Simon;
Säll, Torbjörn;
Halldén, Christer;
Lind-Halldén, Christina;
Nordborg, Magnus

Publication type:

Article

Genotype, haplotype and copy-number variation in worldwide human populations.

Published in:

Nature, 2008, v. 451, n. 7181, p. 998, doi. 10.1038/nature06742

By:

Jakobsson, Mattias;
Scholz, Sonja W.;
Scheet, Paul;
Gibbs, J. Raphael;
VanLiere, Jenna M.;
Fung, Hon-Chung;
Szpiech, Zachary A.;
Degnan, James H.;
Wang, Kai;
Guerreiro, Rita;
Bras, Jose M.;
Schymick, Jennifer C.;
Hernandez, Dena G.;
Traynor, Bryan J.;
Simon-Sanchez, Javier;
Matarin, Mar;
Britton, Angela;
van de Leemput, Joyce;
Rafferty, Ian;
Bucan, Maja

Publication type:

Article

Nonlinear Dynamics of Nonsynonymous (dN) and Synonymous (dS) Substitution Rates Affects Inference of Selection.

Published in:

Genome Biology & Evolution, 2009, v. 1, p. 308, doi. 10.1093/gbe/evp030

By:

Wolf, Jochen B. W.;
Künstner, Axel;
Nam, Kiwoong;
Jakobsson, Mattias;
Ellegren, Hans

Publication type:

Article

Clumpak: a program for identifying clustering modes and packaging population structure inferences across K.

Published in:

Molecular Ecology Resources, 2015, v. 15, n. 5, p. 1179, doi. 10.1111/1755-0998.12387

By:

Kopelman, Naama M.;
Mayzel, Jonathan;
Jakobsson, Mattias;
Rosenberg, Noah A.;
Mayrose, Itay

Publication type:

Article

Patterns of variation in cis-regulatory regions: examining evidence of purifying selection.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-017-4422-y

By:

Naidoo, Thijessen;
Sjödin, Per;
Schlebusch, Carina;
Jakobsson, Mattias

Publication type:

Article

Episodes of Diversification and Isolation in Island Southeast Asian and Near Oceanian Male Lineages.

Published in:

Molecular Biology & Evolution, 2022, v. 39, n. 3, p. 1, doi. 10.1093/molbev/msac045

By:

Karmin, Monika;
Flores, Rodrigo;
Saag, Lauri;
Hudjashov, Georgi;
Brucato, Nicolas;
Crenna-Darusallam, Chelzie;
Larena, Maximilian;
Endicott, Phillip L;
Jakobsson, Mattias;
Lansing, J Stephen;
Sudoyo, Herawati;
Leavesley, Matthew;
Metspalu, Mait;
Ricaut, François-Xavier;
Cox, Murray P

Publication type:

Article

Khoe-San Genomes Reveal Unique Variation and Confirm the Deepest Population Divergence in Homo sapiens.

Published in:

Molecular Biology & Evolution, 2020, v. 37, n. 10, p. 2944, doi. 10.1093/molbev/msaa140

By:

Schlebusch, Carina M;
Sjödin, Per;
Breton, Gwenna;
Günther, Torsten;
Naidoo, Thijessen;
Hollfelder, Nina;
Sjöstrand, Agnes E;
Xu, Jingzi;
Gattepaille, Lucie M;
Vicente, Mário;
Scofield, Douglas G;
Malmström, Helena;
Jongh, Michael de;
Lombard, Marlize;
Soodyall, Himla;
Jakobsson, Mattias

Publication type:

Article

Genetic Affinities among Southern Africa Hunter-Gatherers and the Impact of Admixing Farmer and Herder Populations.

Published in:

Molecular Biology & Evolution, 2019, v. 36, n. 9, p. 1849, doi. 10.1093/molbev/msz089

By:

Vicente, Mário;
Jakobsson, Mattias;
Ebbesen, Peter;
Schlebusch, Carina M

Publication type:

Article

Human Adaptation to Arsenic-Rich Environments.

Published in:

Molecular Biology & Evolution, 2015, v. 32, n. 6, p. 1544, doi. 10.1093/molbev/msv046

By:

Schlebusch, Carina M.;
Gattepaille, Lucie M.;
Engström, Karin;
Vahter, Marie;
Jakobsson, Mattias;
Broberg, Karin

Publication type:

Article

Investigating Population History using Temporal Genetic Differentiation.

Published in:

Molecular Biology & Evolution, 2014, v. 31, n. 9, p. 1, doi. 10.1093/molbev/msu192

By:

Skoglund, Pontus;
Sjödin, Per;
Skoglund, Tobias;
Lascoux, Martin;
Jakobsson, Mattias

Publication type:

Article

Assessing the Maximum Contribution from Ancient Populations.

Published in:

Molecular Biology & Evolution, 2014, v. 31, n. 5, p. 1248, doi. 10.1093/molbev/msu059

By:

Sjödin, Per;
Skoglund, Pontus;
Jakobsson, Mattias

Publication type:

Article