Works by Iwasaki, Shintaro

Results: 46

Translational regulation enhances distinction of cell types in the nervous system.

Published in:

eLife, 2024, p. 1, doi. 10.7554/eLife.90713

By:

Toshiharu Ichinose;
Shu Kondo;
Mai Kanno;
Yuichi Shichino;
Mari Mito;
Shintaro Iwasaki;
Hiromu Tanimoto

Publication type:

Article

Girolline is a sequence context-selective modulator of eIF5A activity.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-024-54838-2

By:

Schneider-Poetsch, Tilman;
Dang, Yongjun;
Iwasaki, Wakana;
Arata, Mayumi;
Shichino, Yuichi;
Al Mourabit, Ali;
Moriou, Celine;
Romo, Daniel;
Liu, Jun O.;
Ito, Takuhiro;
Iwasaki, Shintaro;
Yoshida, Minoru

Publication type:

Article

Mettl1-dependent m<sup>7</sup>G tRNA modification is essential for maintaining spermatogenesis and fertility in Drosophila melanogaster.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-52389-0

By:

Kaneko, Shunya;
Miyoshi, Keita;
Tomuro, Kotaro;
Terauchi, Makoto;
Tanaka, Ryoya;
Kondo, Shu;
Tani, Naoki;
Ishiguro, Kei-Ichiro;
Toyoda, Atsushi;
Kamikouchi, Azusa;
Noguchi, Hideki;
Iwasaki, Shintaro;
Saito, Kuniaki

Publication type:

Article

DMDA-PatA mediates RNA sequence-selective translation repression by anchoring eIF4A and DDX3 to GNG motifs.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-51635-9

By:

Saito, Hironori;
Handa, Yuma;
Chen, Mingming;
Schneider-Poetsch, Tilman;
Shichino, Yuichi;
Takahashi, Mari;
Romo, Daniel;
Yoshida, Minoru;
Fürstner, Alois;
Ito, Takuhiro;
Fukuzawa, Kaori;
Iwasaki, Shintaro

Publication type:

Article

Calibrated ribosome profiling assesses the dynamics of ribosomal flux on transcripts.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-51258-0

By:

Tomuro, Kotaro;
Mito, Mari;
Toh, Hirotaka;
Kawamoto, Naohiro;
Miyake, Takahito;
Chow, Siu Yu A.;
Doi, Masao;
Ikeuchi, Yoshiho;
Shichino, Yuichi;
Iwasaki, Shintaro

Publication type:

Article

The microRNA pathway and cancer.

Published in:

Cancer Science, 2010, v. 101, n. 11, p. 2309, doi. 10.1111/j.1349-7006.2010.01683.x

By:

Kwak, Pieter Bas;
Iwasaki, Shintaro;
Tomari, Yukihide

Publication type:

Article

Guanosine‐specific single‐stranded ribonuclease effectors of a phytopathogenic fungus potentiate host immune responses.

Published in:

New Phytologist, 2024, v. 242, n. 1, p. 170, doi. 10.1111/nph.19582

By:

Kumakura, Naoyoshi;
Singkaravanit‐Ogawa, Suthitar;
Gan, Pamela;
Tsushima, Ayako;
Ishihama, Nobuaki;
Watanabe, Shunsuke;
Seo, Mitsunori;
Iwasaki, Shintaro;
Narusaka, Mari;
Narusaka, Yoshihiro;
Takano, Yoshitaka;
Shirasu, Ken

Publication type:

Article

Selective translation of epigenetic modifiers affects the temporal pattern and differentiation of neural stem cells.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28097-y

By:

Wu, Quan;
Shichino, Yuichi;
Abe, Takaya;
Suetsugu, Taeko;
Omori, Ayaka;
Kiyonari, Hiroshi;
Iwasaki, Shintaro;
Matsuzaki, Fumio

Publication type:

Article

eIF2B-capturing viral protein NSs suppresses the integrated stress response.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27337-x

By:

Kashiwagi, Kazuhiro;
Shichino, Yuichi;
Osaki, Tatsuya;
Sakamoto, Ayako;
Nishimoto, Madoka;
Takahashi, Mari;
Mito, Mari;
Weber, Friedemann;
Ikeuchi, Yoshiho;
Iwasaki, Shintaro;
Ito, Takuhiro

Publication type:

Article

Translation of zinc finger domains induces ribosome collision and Znf598-dependent mRNA decay in zebrafish.

Published in:

PLoS Biology, 2024, v. 22, n. 12, p. 1, doi. 10.1371/journal.pbio.3002887

By:

Ishibashi, Kota;
Shichino, Yuichi;
Han, Peixun;
Wakabayashi, Kimi;
Mito, Mari;
Inada, Toshifumi;
Kimura, Seisuke;
Iwasaki, Shintaro;
Mishima, Yuichiro

Publication type:

Article

Translational Landscape of Protein-Coding and Non-Protein-Coding RNAs upon Light Exposure in Arabidopsis.

Published in:

Plant & Cell Physiology, 2020, v. 61, n. 3, p. 536, doi. 10.1093/pcp/pcz219

By:

Kurihara, Yukio;
Makita, Yuko;
Shimohira, Haruka;
Fujita, Tomoya;
Iwasaki, Shintaro;
Matsui, Minami

Publication type:

Article

The Plant Translatome Surveyed by Ribosome Profiling.

Published in:

Plant & Cell Physiology, 2019, v. 60, n. 9, p. 1917, doi. 10.1093/pcp/pcz059

By:

Fujita, Tomoya;
Kurihara, Yukio;
Iwasaki, Shintaro

Publication type:

Article

The Mechanism Selecting the Guide Strand from Small RNA Duplexes is Different Among Argonaute Proteins.

Published in:

Plant & Cell Physiology, 2008, v. 49, n. 4, p. 493, doi. 10.1093/pcp/pcn043

By:

Atsushi Takeda;
Shintaro Iwasaki;
Toshiaki Watanabe;
Maki Utsumi;
Yuichiro Watanabe

Publication type:

Article

Multifarious Translational Regulation during Replicative Aging in Yeast.

Published in:

Journal of Fungi, 2022, v. 8, n. 9, p. N.PAG, doi. 10.3390/jof8090938

By:

Zhao, Tianyu;
Chida, Asaka;
Shichino, Yuichi;
Choi, Dongwoo;
Mizunuma, Masaki;
Iwasaki, Shintaro;
Ohya, Yoshikazu

Publication type:

Article

A widespread family of heat-resistant obscure (Hero) proteins protect against protein instability and aggregation.

Published in:

PLoS Biology, 2020, v. 18, n. 3, p. 1, doi. 10.1371/journal.pbio.3000632

By:

Tsuboyama, Kotaro;
Osaki, Tatsuya;
Matsuura-Suzuki, Eriko;
Kozuka-Hata, Hiroko;
Okada, Yuki;
Oyama, Masaaki;
Ikeuchi, Yoshiho;
Iwasaki, Shintaro;
Tomari, Yukihide

Publication type:

Article

Quality control of protein synthesis in the early elongation stage.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38077-5

By:

Nagao, Asuteka;
Nakanishi, Yui;
Yamaguchi, Yutaro;
Mishina, Yoshifumi;
Karoji, Minami;
Toya, Takafumi;
Fujita, Tomoya;
Iwasaki, Shintaro;
Miyauchi, Kenjyo;
Sakaguchi, Yuriko;
Suzuki, Tsutomu

Publication type:

Article

RPL3L-containing ribosomes determine translation elongation dynamics required for cardiac function.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37838-6

By:

Shiraishi, Chisa;
Matsumoto, Akinobu;
Ichihara, Kazuya;
Yamamoto, Taishi;
Yokoyama, Takeshi;
Mizoo, Taisuke;
Hatano, Atsushi;
Matsumoto, Masaki;
Tanaka, Yoshikazu;
Matsuura-Suzuki, Eriko;
Iwasaki, Shintaro;
Matsushima, Shouji;
Tsutsui, Hiroyuki;
Nakayama, Keiichi I.

Publication type:

Article

Selective translation of epigenetic modifiers affects the temporal pattern and differentiation of neural stem cells.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28097-y

By:

Wu, Quan;
Shichino, Yuichi;
Abe, Takaya;
Suetsugu, Taeko;
Omori, Ayaka;
Kiyonari, Hiroshi;
Iwasaki, Shintaro;
Matsuzaki, Fumio

Publication type:

Article

Publisher Correction: miRNA-mediated gene silencing in Drosophila larval development involves GW182-dependent and independent mechanisms.

Published in:

2024

By:

Matsuura-Suzuki, Eriko;
Kiyokawa, Kaori;
Iwasaki, Shintaro;
Tomari, Yukihide

Publication type:

Correction Notice

miRNA-mediated gene silencing in Drosophila larval development involves GW182-dependent and independent mechanisms.

Published in:

EMBO Journal, 2024, v. 43, n. 23, p. 6161, doi. 10.1038/s44318-024-00249-4

By:

Matsuura-Suzuki, Eriko;
Kiyokawa, Kaori;
Iwasaki, Shintaro;
Tomari, Yukihide

Publication type:

Article

The ASC‐1 complex promotes translation initiation by scanning ribosomes.

Published in:

EMBO Journal, 2023, v. 42, n. 12, p. 1, doi. 10.15252/embj.2022112869

By:

Kito, Yuki;
Matsumoto, Akinobu;
Ichihara, Kazuya;
Shiraishi, Chisa;
Tang, Ronghao;
Hatano, Atsushi;
Matsumoto, Masaki;
Han, Peixun;
Iwasaki, Shintaro;
Nakayama, Keiichi I

Publication type:

Article

Ribosome slowdown triggers codon‐mediated mRNA decay independently of ribosome quality control.

Published in:

EMBO Journal, 2022, v. 41, n. 5, p. 1, doi. 10.15252/embj.2021109256

By:

Mishima, Yuichiro;
Han, Peixun;
Ishibashi, Kota;
Kimura, Seisuke;
Iwasaki, Shintaro

Publication type:

Article

Nascent polypeptide within the exit tunnel stabilizes the ribosome to counteract risky translation.

Published in:

EMBO Journal, 2021, v. 40, n. 23, p. 1, doi. 10.15252/embj.2021108299

By:

Chadani, Yuhei;
Sugata, Nobuyuki;
Niwa, Tatsuya;
Ito, Yosuke;
Iwasaki, Shintaro;
Taguchi, Hideki

Publication type:

Article

dCas13-mediated translational repression for accurate gene silencing in mammalian cells.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46412-7

By:

Apostolopoulos, Antonios;
Kawamoto, Naohiro;
Chow, Siu Yu A.;
Tsuiji, Hitomi;
Ikeuchi, Yoshiho;
Shichino, Yuichi;
Iwasaki, Shintaro

Publication type:

Article

Into the matrix: current methods for mitochondrial translation studies.

Published in:

Journal of Biochemistry, 2022, v. 171, n. 4, p. 379, doi. 10.1093/jb/mvac005

By:

Apostolopoulos, Antonios;
Iwasaki, Shintaro

Publication type:

Article

Characterization of Arabidopsis decapping proteins AtDCP1 and AtDCP2, which are essential for post-embryonic development

Published in:

FEBS Letters, 2007, v. 581, n. 13, p. 2455, doi. 10.1016/j.febslet.2007.04.051

By:

Iwasaki, Shintaro;
Takeda, Atsushi;
Motose, Hiroyasu;
Watanabe, Yuichiro

Publication type:

Article

Preparing MPICH for exascale.

Published in:

International Journal of High Performance Computing Applications, 2025, v. 39, n. 2, p. 283, doi. 10.1177/10943420241311608

By:

Guo, Yanfei;
Raffenetti, Ken;
Zhou, Hui;
Balaji, Pavan;
Si, Min;
Amer, Abdelhalim;
Iwasaki, Shintaro;
Seo, Sangmin;
Congiu, Giuseppe;
Latham, Robert;
Oden, Lena;
Gillis, Thomas;
Zambre, Rohit;
Ouyang, Kaiming;
Archer, Charles;
Bland, Wesley;
Jose, Jithin;
Sur, Sayantan;
Fujita, Hajime;
Durnov, Dmitry

Publication type:

Article

Ubiquitination of stalled ribosome triggers ribosome-associated quality control.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-00188-1

By:

Yoshitaka Matsuo;
Ken Ikeuchi;
Yasushi Saeki;
Shintaro Iwasaki;
Schmidt, Christian;
Tsuyoshi Udagawa;
Fumiya Sato;
Hikaru Tsuchiya;
Becker, Thomas;
Keiji Tanaka;
Ingolia, Nicholas T.;
Beckmann, Roland;
Toshifumi Inada

Publication type:

Article

Selection of initiator tRNA and start codon by mammalian mitochondrial initiation factor 3 in leaderless mRNA translation.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 3, p. 1, doi. 10.1093/nar/gkaf021

By:

Lee, Muhoon;
Wakigawa, Taisei;
Jia, Qimin;
Liu, Chang;
Huang, Ruiyuan;
Huang, Shuai;
Nagao, Asuteka;
Suzuki, Tsutomu;
Tomita, Kozo;
Iwasaki, Shintaro;
Takeuchi-Tomita, Nono

Publication type:

Article

TRMT10A dysfunction perturbs codon translation of initiator methionine and glutamine and impairs brain functions in mice.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 15, p. 9230, doi. 10.1093/nar/gkae520

By:

Tresky, Roland;
Miyamoto, Yuta;
Nagayoshi, Yu;
Yabuki, Yasushi;
Araki, Kimi;
Takahashi, Yukie;
Komohara, Yoshihiro;
Ge, Huicong;
Nishiguchi, Kayo;
Fukuda, Takaichi;
Kaneko, Hitomi;
Maeda, Nobuko;
Matsuura, Jin;
Iwasaki, Shintaro;
Sakakida, Kourin;
Shioda, Norifumi;
Wei, Fan-Yan;
Tomizawa, Kazuhito;
Chujo, Takeshi

Publication type:

Article

Translation variation across genetic backgrounds reveals a post-transcriptional buffering signature in yeast.

Published in:

Nucleic Acids Research, 2024, v. 52, n. 5, p. 2434, doi. 10.1093/nar/gkae030

By:

Teyssonniere, Elie M;
Shichino, Yuichi;
Mito, Mari;
Friedrich, Anne;
Iwasaki, Shintaro;
Schacherer, Joseph

Publication type:

Article

Combinatorial analysis of translation dynamics reveals eIF2 dependence of translation initiation at near-cognate codons.

Published in:

Nucleic Acids Research, 2021, v. 49, n. 13, p. 7298, doi. 10.1093/nar/gkab549

By:

Ichihara, Kazuya;
Matsumoto, Akinobu;
Nishida, Hiroshi;
Kito, Yuki;
Shimizu, Hideyuki;
Shichino, Yuichi;
Iwasaki, Shintaro;
Imami, Koshi;
Ishihama, Yasushi;
Nakayama, Keiichi I

Publication type:

Article

ATP-dependent human RISC assembly pathways.

Published in:

Nature Structural & Molecular Biology, 2010, v. 17, n. 1, p. 17, doi. 10.1038/nsmb.1733

By:

Mayuko Yoda;
Tomoko Kawamata;
Zain Paroo;
Xuecheng Ye;
Iwasaki, Shintaro;
Qinghua Liu;
Tomari, Yukihide

Publication type:

Article

The Pentatricopeptide Repeat Protein PGR3 Is Required for the Translation of petL and ndhG by Binding Their 5′ UTRs.

Published in:

Plant & Cell Physiology, 2021, v. 62, n. 7, p. 1146, doi. 10.1093/pcp/pcaa180

By:

Higashi, Haruka;
Kato, Yoshinobu;
Fujita, Tomoya;
Iwasaki, Shintaro;
Nakamura, Masayuki;
Nishimura, Yoshiki;
Takenaka, Mizuki;
Shikanai, Toshiharu

Publication type:

Article

A parasitic fungus employs mutated eIF4A to survive on rocaglate-synthesizing Aglaia plants.

Published in:

eLife, 2023, p. 1, doi. 10.7554/eLife.81302

By:

Mingming Chen;
Naoyoshi Kumakura;
Hironori Saito;
Muller, Ryan;
Madoka Nishimoto;
Mito, Mari;
Gan, Pamela;
Ingolia, Nicholas T.;
Shirasu, Ken;
Takuhiro Ito;
Yuichi Shichino;
Shintaro Iwasaki

Publication type:

Article

METTL18-mediated histidine methylation of RPL3 modulates translation elongation for proteostasis maintenance.

Published in:

eLife, 2022, p. 1, doi. 10.7554/eLife.72780

By:

Eriko Matsuura Suzuki;
Tadahiro Shimazu;
Mari Takahashi;
Kaoru Kotoshiba;
Takehiro Suzuki;
Kazuhiro Kashiwagi;
Yoshihiro Sohtome;
Mai Akakabe;
Mikiko Sodeoka;
Naoshi Dohmae;
Takuhiro Ito;
Yoichi Shinkai;
Shintaro Iwasaki

Publication type:

Article

Ribosomal protein S7 ubiquitination during ER stress in yeast is associated with selective mRNA translation and stress outcome.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-76239-3

By:

Matsuki, Yasuko;
Matsuo, Yoshitaka;
Nakano, Yu;
Iwasaki, Shintaro;
Yoko, Hideyuki;
Udagawa, Tsuyoshi;
Li, Sihan;
Saeki, Yasushi;
Yoshihisa, Tohru;
Tanaka, Keiji;
Ingolia, Nicholas T.;
Inada, Toshifumi

Publication type:

Article

N-terminal deletion of Swi3 created by the deletion of a dubious ORF YJL175W mitigates protein burden effect in S. cerevisiae.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-66307-z

By:

Saeki, Nozomu;
Eguchi, Yuichi;
Kintaka, Reiko;
Makanae, Koji;
Shichino, Yuichi;
Iwasaki, Shintaro;
Kanno, Manabu;
Kimura, Nobutada;
Moriya, Hisao

Publication type:

Article

Selectivity of mRNA degradation by autophagy in yeast.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22574-6

By:

Makino, Shiho;
Kawamata, Tomoko;
Iwasaki, Shintaro;
Ohsumi, Yoshinori

Publication type:

Article

Complete chemical structures of human mitochondrial tRNAs.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-18068-6

By:

Suzuki, Takeo;
Yashiro, Yuka;
Kikuchi, Ittoku;
Ishigami, Yuma;
Saito, Hironori;
Matsuzawa, Ikuya;
Okada, Shunpei;
Mito, Mari;
Iwasaki, Shintaro;
Ma, Ding;
Zhao, Xuewei;
Asano, Kana;
Lin, Huan;
Kirino, Yohei;
Sakaguchi, Yuriko;
Suzuki, Tsutomu

Publication type:

Article

Mammalian HEMK1 methylates glutamine residue of the GGQ motif of mitochondrial release factors.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-08061-y

By:

Fang, Qi;
Kimura, Yusuke;
Shimazu, Tadahiro;
Suzuki, Takehiro;
Yamada, Ayumi;
Dohmae, Naoshi;
Iwasaki, Shintaro;
Shinkai, Yoichi

Publication type:

Article

Post-Translational Dosage Compensation Buffers Genetic Perturbations to Stoichiometry of Protein Complexes.

Published in:

PLoS Genetics, 2017, v. 13, n. 1, p. 1, doi. 10.1371/journal.pgen.1006554

By:

Ishikawa, Koji;
Makanae, Koji;
Iwasaki, Shintaro;
Ingolia, Nicholas T.;
Moriya, Hisao

Publication type:

Article

Cell-fate determination by ubiquitin-dependent regulation of translation.

Published in:

Nature, 2015, v. 525, n. 7570, p. 523, doi. 10.1038/nature14978

By:

Werner, Achim;
Iwasaki, Shintaro;
McGourty, Colleen A.;
Medina-Ruiz, Sofia;
Teerikorpi, Nia;
Fedrigo, Indro;
Ingolia, Nicholas T.;
Rape, Michael

Publication type:

Article

Defining fundamental steps in the assembly of the Drosophila RNAi enzyme complex.

Published in:

Nature, 2015, v. 521, n. 7553, p. 533, doi. 10.1038/nature14254

By:

Iwasaki, Shintaro;
Sasaki, Hiroshi M.;
Sakaguchi, Yuriko;
Suzuki, Tsutomu;
Tadakuma, Hisashi;
Tomari, Yukihide

Publication type:

Article

Defining fundamental steps in the assembly of the Drosophila RNAi enzyme complex.

Published in:

Nature, 2015, v. 521, n. 7553, p. 533, doi. 10.1038/nature14254

By:

Iwasaki, Shintaro;
Sasaki, Hiroshi M.;
Sakaguchi, Yuriko;
Suzuki, Tsutomu;
Tadakuma, Hisashi;
Tomari, Yukihide

Publication type:

Article

Codon bias confers stability to human mRNAs.

Published in:

EMBO Reports, 2019, v. 20, n. 11, p. N.PAG, doi. 10.15252/embr.201948220

By:

Hia, Fabian;
Yang, Sheng Fan;
Shichino, Yuichi;
Yoshinaga, Masanori;
Murakawa, Yasuhiro;
Vandenbon, Alexis;
Fukao, Akira;
Fujiwara, Toshinobu;
Landthaler, Markus;
Natsume, Tohru;
Adachi, Shungo;
Iwasaki, Shintaro;
Takeuchi, Osamu

Publication type:

Article