Works matching AU Ivanova, Natalia N.

Results: 55
    1

    Leichte Neucodierung von Selenocystein in der Natur.

    Published in:
    Angewandte Chemie, 2016, v. 128, n. 17, p. 5423, doi. 10.1002/ange.201511657
    By:
    • Mukai, Takahito;
    • Englert, Markus;
    • Tripp, H. James;
    • Miller, Corwin;
    • Ivanova, Natalia N.;
    • Rubin, Edward M.;
    • Kyrpides, Nikos C.;
    • Söll, Dieter
    Publication type:
    Article
    2
    3
    4

    Annotation of metagenome short reads using proxygenes.

    Published in:
    Bioinformatics, 2008, v. 24, n. 16, p. i7, doi. 10.1093/bioinformatics/btn276
    By:
    • Daniel Dalevi;
    • Natalia N. Ivanova;
    • Konstantinos Mavromatis;
    • Sean D. Hooper;
    • Ernest Szeto;
    • Philip Hugenholtz;
    • Nikos C. Kyrpides;
    • Victor M. Markowitz
    Publication type:
    Article
    5

    Technological innovation in Russia.

    Published in:
    Research Technology Management, 1998, v. 41, n. 1, p. 44, doi. 10.1080/08956308.1998.11671183
    By:
    • Dynkin, Alexander A.;
    • Ivanova, Natalia N.
    Publication type:
    Article
    6

    The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25646-9
    By:
    • Martin, Kara;
    • Schmidt, Katrin;
    • Toseland, Andrew;
    • Boulton, Chris A.;
    • Barry, Kerrie;
    • Beszteri, Bánk;
    • Brussaard, Corina P. D.;
    • Clum, Alicia;
    • Daum, Chris G.;
    • Eloe-Fadrosh, Emiley;
    • Fong, Allison;
    • Foster, Brian;
    • Foster, Bryce;
    • Ginzburg, Michael;
    • Huntemann, Marcel;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.;
    • Lindquist, Erika;
    • Mukherjee, Supratim;
    • Palaniappan, Krishnaveni
    Publication type:
    Article
    7
    8
    9
    10
    11

    Complete genome sequence of Jiangella gansuensis strain YIM 002<sup>T</sup> (DSM 44835<sup>T</sup>), the type species of the genus Jiangella and source of new antibiotic compounds.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0226-6
    By:
    • Jian-Yu Jiao;
    • Carro, Lorena;
    • Lan Liu;
    • Xiao-Yang Gao;
    • Xiao-Tong Zhang;
    • Hozzein, Wael N.;
    • Lapidus, Alla;
    • Huntemann, Marcel;
    • Reddy, T. B. K.;
    • Varghese, Neha;
    • Hadjithomas, Michalis;
    • Ivanova, Natalia N.;
    • Göker, Markus;
    • Pillay, Manoj;
    • Eisen, Jonathan A.;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Wen-Jun Li
    Publication type:
    Article
    12

    Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050<sup>T</sup> (DSM 19838<sup>T</sup>) and Gramella portivictoriae UST040801-001<sup>T</sup> (DSM 23547<sup>T</sup>), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0163-9
    By:
    • Panschin, Irina;
    • Sixing Huang;
    • Meier-Kolthoff, Jan P.;
    • Tindall, Brian J.;
    • Rohde, Manfred;
    • Verbarg, Susanne;
    • Lapidus, Alla;
    • Han, James;
    • Trong, Stephan;
    • Haynes, Matthew;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Göker, Markus;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    13

    High quality draft genome sequence of Meganema perideroedes str. Gr1<sup>T</sup> and a proposal for its reclassification to the family Meganemaceae fam. nov.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0013-1
    By:
    • McIlroy, Simon J.;
    • Lapidus, Alla;
    • Thomsen, Trine R.;
    • Han, James;
    • Haynes, Matthew;
    • Lobos, Elizabeth;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Markowitz, Victor;
    • Verbarg, Susanne;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos;
    • Nielsen, Per H.
    Publication type:
    Article
    14

    High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7<sup>T</sup>, and emended description of the genus Halotalea.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0052-7
    By:
    • Ntougias, Spyridon;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Reddy, T. B. K.;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Markowitz, Victor M.;
    • Klenk, Hans-Peter;
    • Woyke, Tanja;
    • Fasseas, Constantinos;
    • Kyrpides, Nikos C.;
    • Zervakis, Georgios I.
    Publication type:
    Article
    15
    16

    High quality draft genome sequence of Brachymonas chironomi AIMA4T (DSM 19884<sup>T</sup>) isolated from a Chironomus sp. egg mass.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0010-4
    By:
    • Laviad, Sivan;
    • Lapidus, Alla;
    • Han, James;
    • Haynes, Matthew;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Lang, Elke;
    • Rohde, Manfred;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Halpern, Malka
    Publication type:
    Article
    17
    18

    Draft genome sequence of Halomonas lutea strain YIM 91125<sup>T</sup> (DSM 23508<sup>T</sup>) isolated from the alkaline Lake Ebinur in Northwest China.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-1
    By:
    • Gao, Xiao-Yang;
    • Zhi, Xiao-Yang;
    • Li, Hong-Wei;
    • Yu Zhou;
    • Alla Lapidus;
    • James Han;
    • Haynes, Matthew;
    • Lobos, Elizabeth;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Tindall, Brian J.;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Wen-Jun Li
    Publication type:
    Article
    19

    Metagenomic investigation of the geologically unique Hellenic Volcanic Arc reveals a distinctive ecosystem with unexpected physiology.

    Published in:
    Environmental Microbiology, 2016, v. 18, n. 4, p. 1122, doi. 10.1111/1462-2920.13095
    By:
    • Oulas, Anastasis;
    • Polymenakou, Paraskevi N.;
    • Seshadri, Rekha;
    • Tripp, H. James;
    • Mandalakis, Manolis;
    • Paez ‐ Espino, A. David;
    • Pati, Amrita;
    • Chain, Patrick;
    • Nomikou, Paraskevi;
    • Carey, Steven;
    • Kilias, Stephanos;
    • Christakis, Christos;
    • Kotoulas, Georgios;
    • Magoulas, Antonios;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    20

    Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials.

    Published in:
    Scientific Data, 2019, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41597-019-0222-3
    By:
    • Högfors-Rönnholm, Eva;
    • Lopez-Fernandez, Margarita;
    • Christel, Stephan;
    • Brambilla, Diego;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Foster, Brian;
    • Foster, Bryce;
    • Roux, Simon;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mukherjee, Supratim;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Copeland, Alex;
    • Chen, I-Min A.;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.;
    • Harmon-Smith, Miranda;
    • Eloe-Fadrosh, Emiley A.
    Publication type:
    Article
    21
    22
    23
    24
    25

    IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata.

    Published in:
    Nucleic Acids Research, 2024, v. 52, n. D1, p. D164, doi. 10.1093/nar/gkad964
    By:
    • Camargo, Antonio Pedro;
    • Call, Lee;
    • Roux, Simon;
    • Nayfach, Stephen;
    • Huntemann, Marcel;
    • Palaniappan, Krishnaveni;
    • Ratner, Anna;
    • Chu, Ken;
    • Mukherjeep, Supratim;
    • Reddy, T B K;
    • Chen, I-Min A;
    • Ivanova, Natalia N;
    • Eloe-Fadrosh, Emiley A;
    • Woyke, Tanja;
    • Baltrus, David A;
    • Castañeda-Barba, Salvador;
    • de la Cruz, Fernando;
    • Funnell, Barbara E;
    • Hall, James P J;
    • Mukhopadhyay, Aindrila
    Publication type:
    Article
    26

    IMG/VR v4: an expanded database of uncultivated virus genomes within a framework of extensive functional, taxonomic, and ecological metadata.

    Published in:
    Nucleic Acids Research, 2023, v. 51, n. D1, p. D733, doi. 10.1093/nar/gkac1037
    By:
    • Camargo, Antonio Pedro;
    • Nayfach, Stephen;
    • Chen, I-Min A;
    • Palaniappan, Krishnaveni;
    • Ratner, Anna;
    • Chu, Ken;
    • Ritter, Stephan J;
    • Reddy, T B K;
    • Mukherjee, Supratim;
    • Schulz, Frederik;
    • Call, Lee;
    • Neches, Russell Y;
    • Woyke, Tanja;
    • Ivanova, Natalia N;
    • Eloe-Fadrosh, Emiley A;
    • Kyrpides, Nikos C;
    • Roux, Simon
    Publication type:
    Article
    27
    28
    29

    IMG/M v.5.0: an integrated data management and comparative analysis system for microbial genomes and microbiomes.

    Published in:
    Nucleic Acids Research, 2019, v. 47, n. D1, p. D666, doi. 10.1093/nar/gky901
    By:
    • Chen, I-Min A;
    • Chu, Ken;
    • Palaniappan, Krishna;
    • Pillay, Manoj;
    • Ratner, Anna;
    • Huang, Jinghua;
    • Huntemann, Marcel;
    • Varghese, Neha;
    • White, James R;
    • Seshadri, Rekha;
    • Smirnova, Tatyana;
    • Kirton, Edward;
    • Jungbluth, Sean P;
    • Woyke, Tanja;
    • Eloe-Fadrosh, Emiley A;
    • Ivanova, Natalia N;
    • Kyrpides, Nikos C
    Publication type:
    Article
    30
    31

    Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs.

    Published in:
    Nature Communications, 2016, v. 7, n. 1, p. 10476, doi. 10.1038/ncomms10476
    By:
    • Eloe-Fadrosh, Emiley A.;
    • Paez-Espino, David;
    • Jarett, Jessica;
    • Dunfield, Peter F.;
    • Hedlund, Brian P.;
    • Dekas, Anne E.;
    • Grasby, Stephen E.;
    • Brady, Allyson L.;
    • Dong, Hailiang;
    • Briggs, Brandon R.;
    • Li, Wen-Jun;
    • Goudeau, Danielle;
    • Malmstrom, Rex;
    • Pati, Amrita;
    • Pett-Ridge, Jennifer;
    • Rubin, Edward M.;
    • Woyke, Tanja;
    • Kyrpides, Nikos C.;
    • Ivanova, Natalia N.
    Publication type:
    Article
    32

    A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea.

    Published in:
    Nature, 2009, v. 462, n. 7276, p. 1056, doi. 10.1038/nature08656
    By:
    • Dongying Wu;
    • Hugenholtz, Philip;
    • Mavromatis, Konstantinos;
    • Pukall, Rüdiger;
    • Dalin, Eileen;
    • Ivanova, Natalia N.;
    • Kunin, Victor;
    • Goodwin, Lynne;
    • Wu, Martin;
    • Tindall, Brian J.;
    • Hooper, Sean D.;
    • Pati, Amrita;
    • Lykidis, Athanasios;
    • Spring, Stefan;
    • Anderson, Iain J.;
    • D'haeseleer, Patrik;
    • Zemla, Adam;
    • Singer, Mitchell;
    • Lapidus, Alla;
    • Nolan, Matt
    Publication type:
    Article
    33

    Symbiosis insights through metagenomic analysis of a microbial consortium.

    Published in:
    Nature, 2006, v. 443, n. 7114, p. 950, doi. 10.1038/nature05192
    By:
    • Woyke, Tanja;
    • Teeling, Hanno;
    • Ivanova, Natalia N.;
    • Huntemann, Marcel;
    • Richter, Michael;
    • Gloeckner, Frank Oliver;
    • Boffelli, Dario;
    • Anderson, Iain J.;
    • Barry, Kerrie W.;
    • Shapiro, Harris J.;
    • Szeto, Ernest;
    • Kyrpides, Nikos C.;
    • Mussmann, Marc;
    • Amann, Rudolf;
    • Bergin, Claudia;
    • Ruehland, Caroline;
    • Rubin, Edward M.;
    • Dubilier, Nicole
    Publication type:
    Article
    34

    Towards a balanced view of the bacterial tree of life.

    Published in:
    Microbiome, 2017, v. 5, p. 1, doi. 10.1186/s40168-017-0360-9
    By:
    • Schulz, Frederik;
    • Eloe-Fadrosh, Emiley A.;
    • Bowers, Robert M.;
    • Jarett, Jessica;
    • Nielsen, Torben;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.;
    • Woyke, Tanja
    Publication type:
    Article
    35

    Genome-Based Taxonomic Classification of Bacteroidetes.

    Published in:
    Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.02003
    By:
    • Hahnke, Richard L.;
    • Meier-Kolthoff, Jan P.;
    • García-López, Marina;
    • Mukherjee, Supratim;
    • Huntemann, Marcel;
    • Ivanova, Natalia N.;
    • Woyke, Tanja;
    • Kyrpides, Nikos C.;
    • Klenk, Hans-Peter;
    • Göker, Markus
    Publication type:
    Article
    36

    Facile Recoding of Selenocysteine in Nature.

    Published in:
    Angewandte Chemie International Edition, 2016, v. 55, n. 17, p. 5337, doi. 10.1002/anie.201511657
    By:
    • Mukai, Takahito;
    • Englert, Markus;
    • Tripp, H. James;
    • Miller, Corwin;
    • Ivanova, Natalia N.;
    • Rubin, Edward M.;
    • Kyrpides, Nikos C.;
    • Söll, Dieter
    Publication type:
    Article
    37

    Medicago root nodule microbiomes: insights into a complex ecosystem with potential candidates for plant growth promotion.

    Published in:
    Plant & Soil, 2022, v. 471, n. 1/2, p. 507, doi. 10.1007/s11104-021-05247-7
    By:
    • Martínez-Hidalgo, Pilar;
    • Humm, Ethan A.;
    • Still, David W.;
    • Shi, Baochen;
    • Pellegrini, Matteo;
    • de la Roca, Gabriela;
    • Veliz, Esteban;
    • Maymon, Maskit;
    • Bru, Pierrick;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mukherjee, Supratim;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.;
    • Shapiro, Nicole;
    • Eloe-Fadrosh, Emiley A.
    Publication type:
    Article
    38

    Insights into the phylogeny and coding potential of microbial dark matter.

    Published in:
    Nature, 2013, v. 499, n. 7459, p. 431, doi. 10.1038/nature12352
    By:
    • Rinke, Christian;
    • Schwientek, Patrick;
    • Sczyrba, Alexander;
    • Ivanova, Natalia N.;
    • Anderson, Iain J.;
    • Cheng, Jan-Fang;
    • Darling, Aaron;
    • Malfatti, Stephanie;
    • Swan, Brandon K.;
    • Gies, Esther A.;
    • Dodsworth, Jeremy A.;
    • Hedlund, Brian P.;
    • Tsiamis, George;
    • Sievert, Stefan M.;
    • Liu, Wen-Tso;
    • Eisen, Jonathan A.;
    • Hallam, Steven J.;
    • Kyrpides, Nikos C.;
    • Stepanauskas, Ramunas;
    • Rubin, Edward M.
    Publication type:
    Article
    39
    40
    41

    Transfer RNAs with novel cloverleaf structures.

    Published in:
    Nucleic Acids Research, 2017, v. 45, n. 5, p. 2776, doi. 10.1093/nar/gkw898
    By:
    • Mukai, Takahito;
    • Vargas-Rodriguez, Oscar;
    • Englert, Markus;
    • Tripp, H. James;
    • Ivanova, Natalia N.;
    • Rubin, Edward M.;
    • Kyrpides, Nikos C.;
    • Söll, Dieter
    Publication type:
    Article
    42
    43

    IMG/M: integrated genome and metagenome comparative data analysis system.

    Published in:
    Nucleic Acids Research, 2017, v. 45, n. D1, p. D507, doi. 10.1093/nar/gkw929
    By:
    • Chen, I.-Min A.;
    • Markowitz, Victor M.;
    • Ken Chu;
    • Palaniappan, Krishna;
    • Szeto, Ernest;
    • Pillay, Manoj;
    • Ratner, Anna;
    • Jinghua Huang;
    • Andersen, Evan;
    • Huntemann, Marcel;
    • Varghese, Neha;
    • Hadjithomas, Michalis;
    • Tennessen, Kristin;
    • Nielsen, Torben;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    44

    IMG 4 version of the integrated microbial genomes comparative analysis system.

    Published in:
    Nucleic Acids Research, 2014, v. 42, n. D1, p. D560, doi. 10.1093/nar/gkt963
    By:
    • Markowitz, Victor M.;
    • Chen, I-Min A.;
    • Palaniappan, Krishna;
    • Chu, Ken;
    • Szeto, Ernest;
    • Pillay, Manoj;
    • Ratner, Anna;
    • Huang, Jinghua;
    • Woyke, Tanja;
    • Huntemann, Marcel;
    • Anderson, Iain;
    • Billis, Konstantinos;
    • Varghese, Neha;
    • Mavromatis, Konstantinos;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    45

    IMG/M 4 version of the integrated metagenome comparative analysis system.

    Published in:
    Nucleic Acids Research, 2014, v. 42, n. D1, p. D568, doi. 10.1093/nar/gkt919
    By:
    • Markowitz, Victor M.;
    • Chen, I-Min A.;
    • Chu, Ken;
    • Szeto, Ernest;
    • Palaniappan, Krishna;
    • Pillay, Manoj;
    • Ratner, Anna;
    • Huang, Jinghua;
    • Pagani, Ioanna;
    • Tringe, Susannah;
    • Huntemann, Marcel;
    • Billis, Konstantinos;
    • Varghese, Neha;
    • Tennessen, Kristin;
    • Mavromatis, Konstantinos;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    46

    IMG: the integrated microbial genomes database and comparative analysis system.

    Published in:
    Nucleic Acids Research, 2012, p. D115, doi. 10.1093/nar/gkr1044
    By:
    • Markowitz, Victor M.;
    • Chen, I-Min A.;
    • Palaniappan, Krishna;
    • Chu, Ken;
    • Szeto, Ernest;
    • Grechkin, Yuri;
    • Ratner, Anna;
    • Jacob, Biju;
    • Huang, Jinghua;
    • Williams, Peter;
    • Huntemann, Marcel;
    • Anderson, Iain;
    • Mavromatis, Konstantinos;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    47

    IMG/M: the integrated metagenome data management and comparative analysis system.

    Published in:
    Nucleic Acids Research, 2012, p. D123, doi. 10.1093/nar/gkr975
    By:
    • Markowitz, Victor M.;
    • Chen, I-Min A.;
    • Chu, Ken;
    • Szeto, Ernest;
    • Palaniappan, Krishna;
    • Grechkin, Yuri;
    • Ratner, Anna;
    • Jacob, Biju;
    • Pati, Amrita;
    • Huntemann, Marcel;
    • Liolios, Konstantinos;
    • Pagani, Ioanna;
    • Anderson, Iain;
    • Mavromatis, Konstantinos;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    48
    49

    IMG/M: a data management and analysis system for metagenomes.

    Published in:
    Nucleic Acids Research, 2008, v. 36, p. D534
    By:
    • Markowitz, Victor M.;
    • Ivanova, Natalia N.;
    • Szeto, Ernest;
    • Palaniappan, Krishna;
    • Chu, Ken;
    • Dalevi, Daniel;
    • Chen, I-Min A.;
    • Grechkin, Yuri;
    • Dubchak, Inna;
    • Anderson, Iain;
    • Lykidis, Athanasios;
    • Mavromatis, Konstantinos;
    • Hugenholtz, Philip;
    • Kyrpides, Nikos C.
    Publication type:
    Article
    50