Works by Ivanova, Natalia

Results: 278
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    Medicago root nodule microbiomes: insights into a complex ecosystem with potential candidates for plant growth promotion.

    Published in:
    Plant & Soil, 2022, v. 471, n. 1/2, p. 507, doi. 10.1007/s11104-021-05247-7
    By:
    • Martínez-Hidalgo, Pilar;
    • Humm, Ethan A.;
    • Still, David W.;
    • Shi, Baochen;
    • Pellegrini, Matteo;
    • de la Roca, Gabriela;
    • Veliz, Esteban;
    • Maymon, Maskit;
    • Bru, Pierrick;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mukherjee, Supratim;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Ivanova, Natalia N.;
    • Kyrpides, Nikos C.;
    • Shapiro, Nicole;
    • Eloe-Fadrosh, Emiley A.
    Publication type:
    Article
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    High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T (DSM 29698).

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0236-4
    By:
    • Patil, Yogita;
    • Müller, Nicolai;
    • Schink, Bernhard;
    • Whitman, William B.;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, T. B. K.;
    • Daum, Chris;
    • Shapiro, Nicole;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Woyke, Tanja;
    • Junghare, Madan
    Publication type:
    Article
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    High-quality permanent draft genome sequence of the Bradyrhizobium elkanii type strain USDA 76<sup>T</sup>, isolated from Glycine max (L.) Merr.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0238-2
    By:
    • Reeve, Wayne;
    • van Berkum, Peter;
    • Ardley, Julie;
    • Tian, Rui;
    • Gollagher, Margaret;
    • Marinova, Dora;
    • Elia, Patrick;
    • Reddy, T. B. K.;
    • Pillay, Manoj;
    • Varghese, Neha;
    • Seshadri, Rekha;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Baeshen, Mohamed N.;
    • Baeshen, Nabih A.;
    • Kyrpides, Nikos
    Publication type:
    Article
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    Complete genome sequence of Jiangella gansuensis strain YIM 002<sup>T</sup> (DSM 44835<sup>T</sup>), the type species of the genus Jiangella and source of new antibiotic compounds.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0226-6
    By:
    • Jian-Yu Jiao;
    • Carro, Lorena;
    • Lan Liu;
    • Xiao-Yang Gao;
    • Xiao-Tong Zhang;
    • Hozzein, Wael N.;
    • Lapidus, Alla;
    • Huntemann, Marcel;
    • Reddy, T. B. K.;
    • Varghese, Neha;
    • Hadjithomas, Michalis;
    • Ivanova, Natalia N.;
    • Göker, Markus;
    • Pillay, Manoj;
    • Eisen, Jonathan A.;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Wen-Jun Li
    Publication type:
    Article
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    High-quality draft genome sequence of Rhizobium mesoamericanum strain STM6155, a Mimosa pudica microsymbiont from New Caledonia.

    Published in:
    Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-016-0212-4
    By:
    • Klonowska, Agnieszka;
    • López-López, Aline;
    • Moulin, Lionel;
    • Ardley, Julie;
    • Gollagher, Margaret;
    • Marinova, Dora;
    • Tian, Rui;
    • Huntemann, Marcel;
    • Reddy, T. B. K.;
    • Varghese, Neha;
    • Woyke, Tanja;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Seshadri, Rekha;
    • Baeshen, Mohamed N.;
    • Baeshen, Nabih A.;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article
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    Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0194-2
    By:
    • Anderson, Iain J.;
    • DasSarma, Priya;
    • Lucas, Susan;
    • Copeland, Alex;
    • Lapidus, Alla;
    • Del Rio, Tijana Glavina;
    • Tice, Hope;
    • Dalin, Eileen;
    • Bruce, David C.;
    • Goodwin, Lynne;
    • Pitluck, Sam;
    • Sims, David;
    • Brettin, Thomas S.;
    • Detter, John C.;
    • Han, Cliff S.;
    • Larimer, Frank;
    • Hauser, Loren;
    • Land, Miriam;
    • Ivanova, Natalia;
    • Richardson, Paul
    Publication type:
    Article
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    Permanent draft genome of Thermithiobacillus tepidarius DSM 3134T, a moderately thermophilic, obligately chemolithoautotrophic member of the Acidithiobacillia.

    Published in:
    Standards in Genomic Sciences, 2016, p. 1, doi. 10.1186/s40793-016-0188-0
    By:
    • Boden, Rich;
    • Hutt, Lee P.;
    • Huntemann, Marcel;
    • Clum, Alicia;
    • Pillay, Manoj;
    • Palaniappan, Krishnaveni;
    • Varghese, Neha;
    • Mikhailova, Natalia;
    • Stamatis, Dimitrios;
    • Reddy, Tatiparthi;
    • Chew Yee Ngan;
    • Daum, Chris;
    • Shapiro, Nicole;
    • Markowitz, Victor;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Kyrpides, Nikos
    Publication type:
    Article
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    High quality draft genome sequences of Pseudomonas fulva DSM 17717<sup>T</sup>, Pseudomonas parafulva DSM 17004<sup>T</sup> and Pseudomonas cremoricolorata DSM 17059<sup>T</sup> type strains.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0178-2
    By:
    • Peña, Arantxa;
    • Busquets, Antonio;
    • Gomila, Margarita;
    • Mulet, Magdalena;
    • Gomila, Rosa M.;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Markowitz, Victor;
    • García-Valdés, Elena;
    • Göker, Markus;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos;
    • Lalucat, Jorge
    Publication type:
    Article
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    High-quality permanent draft genome sequence of Ensifer sp. PC2, isolated from a nitrogen-fixing root nodule of the legume tree (Khejri) native to the Thar Desert of India.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0157-7
    By:
    • Gehlot, Hukam Singh;
    • Ardley, Julie;
    • Tak, Nisha;
    • Rui Tian;
    • Poonar, Neetu;
    • Meghwal, Raju R.;
    • Rathi, Sonam;
    • Tiwari, Ravi;
    • Adnawani, Wan;
    • Seshadri, Rekha;
    • Reddy, T. B. K.;
    • Pati, Amrita;
    • Woyke, Tanja;
    • Pillay, Manoj;
    • Markowitz, Victor;
    • Baeshen, Mohammed N.;
    • Al-Hejin, Ahmed M.;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Reeve, Wayne
    Publication type:
    Article
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    High-quality draft genome sequence of Flavobacterium suncheonense GH29-5<sup>T</sup> (DSM 17707<sup>T</sup>) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5<sup>T</sup>.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0159-5
    By:
    • Tashkandy, Nisreen;
    • Sabban, Sari;
    • Fakieh, Mohammad;
    • Meier-Kolthoff, Jan P.;
    • Sixing Huang;
    • Tindall, Brian J.;
    • Rohde, Manfred;
    • Baeshen, Mohammed N.;
    • Baeshen, Nabih A.;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Pillay, Manoj;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Göker, Markus;
    • Klenk, Hans-Peter
    Publication type:
    Article
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    Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050<sup>T</sup> (DSM 19838<sup>T</sup>) and Gramella portivictoriae UST040801-001<sup>T</sup> (DSM 23547<sup>T</sup>), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0163-9
    By:
    • Panschin, Irina;
    • Sixing Huang;
    • Meier-Kolthoff, Jan P.;
    • Tindall, Brian J.;
    • Rohde, Manfred;
    • Verbarg, Susanne;
    • Lapidus, Alla;
    • Han, James;
    • Trong, Stephan;
    • Haynes, Matthew;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Göker, Markus;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.
    Publication type:
    Article
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    Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477<sup>T</sup>).

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, p. 1, doi. 10.1186/s40793-016-0162-x
    By:
    • Kappler, Ulrike;
    • Davenport, Karen;
    • Beatson, Scott;
    • Lapidus, Alla;
    • Pan, Chongle;
    • Han, Cliff;
    • del Carmen Montero-Calasanz, Maria;
    • Land, Miriam;
    • Hauser, Loren;
    • Rohde, Manfred;
    • Göker, Markus;
    • Ivanova, Natalia;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.
    Publication type:
    Article
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    The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4).

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0138-x
    By:
    • Huntemann, Marcel;
    • Ivanova, Natalia;
    • Mavromatis, Konstantinos;
    • Tripp, H.;
    • Paez-Espino, David;
    • Tennessen, Kristin;
    • Palaniappan, Krishnaveni;
    • Szeto, Ernest;
    • Pillay, Manoj;
    • Chen, I-Min;
    • Pati, Amrita;
    • Nielsen, Torben;
    • Markowitz, Victor;
    • Kyrpides, Nikos
    Publication type:
    Article
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    Complete genome sequence of Methanospirillum hungatei type strain JF1.

    Published in:
    Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0124-8
    By:
    • Gunsalus, Robert;
    • Cook, Lauren;
    • Crable, Bryan;
    • Rohlin, Lars;
    • McDonald, Erin;
    • Mouttaki, Housna;
    • Sieber, Jessica;
    • Poweleit, Nicole;
    • Zhou, Hong;
    • Lapidus, Alla;
    • Daligault, Hajnalka;
    • Land, Miriam;
    • Gilna, Paul;
    • Ivanova, Natalia;
    • Kyrpides, Nikos;
    • Culley, David;
    • McInerney, Michael
    Publication type:
    Article
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    High quality draft genome sequence of Meganema perideroedes str. Gr1<sup>T</sup> and a proposal for its reclassification to the family Meganemaceae fam. nov.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0013-1
    By:
    • McIlroy, Simon J.;
    • Lapidus, Alla;
    • Thomsen, Trine R.;
    • Han, James;
    • Haynes, Matthew;
    • Lobos, Elizabeth;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Markowitz, Victor;
    • Verbarg, Susanne;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos;
    • Nielsen, Per H.
    Publication type:
    Article
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    High-quality permanent draft genome sequence of the extremely osmotolerant diphenol degrading bacterium Halotalea alkalilenta AW-7<sup>T</sup>, and emended description of the genus Halotalea.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0052-7
    By:
    • Ntougias, Spyridon;
    • Lapidus, Alla;
    • Copeland, Alex;
    • Reddy, T. B. K.;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Markowitz, Victor M.;
    • Klenk, Hans-Peter;
    • Woyke, Tanja;
    • Fasseas, Constantinos;
    • Kyrpides, Nikos C.;
    • Zervakis, Georgios I.
    Publication type:
    Article
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    Complete genome sequence of the phenanthrene-degrading soil bacterium Delftia acidovorans Cs1-4.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0041-x
    By:
    • Shetty, Ameesha R.;
    • de Gannes, Vidya;
    • Obi, Chioma C.;
    • Lucas, Susan;
    • Lapidus, Alla;
    • Jan-Fang Cheng;
    • Goodwin, Lynne A.;
    • Pitluck, Samuel;
    • Peters, Linda;
    • Mikhailova, Natalia;
    • Teshima, Hazuki;
    • Han, Cliff;
    • Tapia, Roxanne;
    • Land, Miriam;
    • Hauser, Loren J.;
    • Kyrpides, Nikos;
    • Ivanova, Natalia;
    • Pagani, Ioanna;
    • Chain, Patrick S. G.;
    • Denef, Vincent J
    Publication type:
    Article
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    High quality draft genome sequence of Brachymonas chironomi AIMA4T (DSM 19884<sup>T</sup>) isolated from a Chironomus sp. egg mass.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0010-4
    By:
    • Laviad, Sivan;
    • Lapidus, Alla;
    • Han, James;
    • Haynes, Matthew;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Lang, Elke;
    • Rohde, Manfred;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Halpern, Malka
    Publication type:
    Article
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    High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1<sup>T</sup> (DSM 17521<sup>T</sup>) isolated from muddy waters of a drainage system in Chandigarh, India.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-8
    By:
    • Mukherjee, Supratim;
    • Lapidus, Alla;
    • Shapiro, Nicole;
    • Jan-Fang Cheng;
    • Han, James;
    • Reddy, T. B. K.;
    • Huntemann, Marcel;
    • Ivanova, Natalia;
    • Mikhailova, Natalia;
    • Amy Chen;
    • Palaniappan, Krishna;
    • Spring, Stefan;
    • Göker, Markus;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Tindall, Brian J.;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Pati, Amrita
    Publication type:
    Article
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    Draft genome sequence of Halomonas lutea strain YIM 91125<sup>T</sup> (DSM 23508<sup>T</sup>) isolated from the alkaline Lake Ebinur in Northwest China.

    Published in:
    Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/1944-3277-10-1
    By:
    • Gao, Xiao-Yang;
    • Zhi, Xiao-Yang;
    • Li, Hong-Wei;
    • Yu Zhou;
    • Alla Lapidus;
    • James Han;
    • Haynes, Matthew;
    • Lobos, Elizabeth;
    • Huntemann, Marcel;
    • Pati, Amrita;
    • Ivanova, Natalia N.;
    • Mavromatis, Konstantinos;
    • Tindall, Brian J.;
    • Markowitz, Victor;
    • Woyke, Tanja;
    • Klenk, Hans-Peter;
    • Kyrpides, Nikos C.;
    • Wen-Jun Li
    Publication type:
    Article