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New insights on the catalytic center of proteins from peptidylprolyl isomerase group based on the FOD‐M model.
- Published in:
- Journal of Cellular Biochemistry, 2023, v. 124, n. 6, p. 818, doi. 10.1002/jcb.30407
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- Publication type:
- Article
Search for structural similarity in proteins.
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- Bioinformatics, 2003, v. 19, n. 1, p. 117, doi. 10.1093/bioinformatics/19.1.117
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- Publication type:
- Article
Editorial: Structure and function of trans-membrane proteins.
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- 2024
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- Publication type:
- Editorial
Model of the external force field for the protein folding process -- the role of prefoldin.
- Published in:
- Frontiers in Chemistry, 2024, p. 01, doi. 10.3389/fchem.2024.1342434
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- Publication type:
- Article
Sequence-Structure-Function Relation Characterized in silico.
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- In Silico Biology, 2006, v. 6, n. 6, p. 589
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- Publication type:
- Article
Gauss-Function-Based Model of Hydrophobicity Density in Proteins.
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- In Silico Biology, 2006, v. 6, n. 1/2, p. 15
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- Publication type:
- Article
SPI – Structure Predictability Index for Protein Sequences.
- Published in:
- In Silico Biology, 2005, v. 5, n. 3, p. 227
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- Publication type:
- Article
The Status of Edge Strands in Ferredoxin-Like Fold.
- Published in:
- Symmetry (20738994), 2020, v. 12, n. 6, p. 1032, doi. 10.3390/sym12061032
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- Publication type:
- Article
Alternative Hydrophobic Core in Proteins—The Effect of Specific Synergy.
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- Symmetry (20738994), 2020, v. 12, n. 2, p. 273, doi. 10.3390/sym12020273
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- Publication type:
- Article
Symmetry and Dissymmetry in Protein Structure—System-Coding Its Biological Specificity.
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- Symmetry (20738994), 2019, v. 11, n. 10, p. 1215, doi. 10.3390/sym11101215
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- Publication type:
- Article
Lightweight ProteinUnet2 network for protein secondary structure prediction: a step towards proper evaluation.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04623-z
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- Publication type:
- Article
Alternative Structures of α-Synuclein.
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- Molecules, 2020, v. 25, n. 3, p. 600, doi. 10.3390/molecules25030600
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- Publication type:
- Article
The Amyloid as a Ribbon-Like Micelle in Contrast to Spherical Micelles Represented by Globular Proteins.
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- Molecules, 2019, v. 24, n. 23, p. 4395, doi. 10.3390/molecules24234395
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- Publication type:
- Article
Secondary structure in polymorphic forms of alpha-synuclein amyloids.
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- Acta Biochimica Polonica, 2023, v. 70, n. 2, p. 435, doi. 10.18388/abp.2020_6788
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- Publication type:
- Article
Internal force field in selected proteins.
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- Acta Biochimica Polonica, 2019, v. 66, n. 4, p. 451, doi. 10.18388/abp.2019_2865
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- Publication type:
- Article
Amyloids, Congo red and the apple-green effect.
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- Acta Biochimica Polonica, 2019, v. 66, n. 1, p. 39
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- Publication type:
- Article
Structural analysis of the Aβ(15-40) amyloid fibril based on hydrophobicity distribution.
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- Acta Biochimica Polonica, 2018, v. 65, n. 4, p. 595, doi. 10.18388/abp.2018_2647
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- Publication type:
- Article
Silver ions as EM marker of congo red ligation sites in amyloids and amyloid-like aggregates.
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- Acta Biochimica Polonica, 2017, v. 64, n. 1, p. 161, doi. 10.18388/abp.2016_1393
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- Publication type:
- Article
The use of supramolecular structures as protein ligands.
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- Journal of Molecular Modeling, 2013, v. 19, n. 11, p. 4731, doi. 10.1007/s00894-012-1744-1
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- Publication type:
- Article
Hypothetical in silico model of the early-stage intermediate in protein folding.
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- Journal of Molecular Modeling, 2013, v. 19, n. 10, p. 4259, doi. 10.1007/s00894-013-1909-6
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- Publication type:
- Article
Fuzzy oil drop model to interpret the structure of antifreeze proteins and their mutants.
- Published in:
- Journal of Molecular Modeling, 2012, v. 18, n. 1, p. 229, doi. 10.1007/s00894-011-1033-4
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- Publication type:
- Article
“Fuzzy oil drop” model applied to individual small proteins built of 70 amino acids.
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- Journal of Molecular Modeling, 2010, v. 16, n. 7, p. 1269, doi. 10.1007/s00894-009-0639-2
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- Publication type:
- Article
Secondary Structure in Amyloids in Relation to Their Wild Type Forms.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 1, p. 154, doi. 10.3390/ijms24010154
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- Publication type:
- Article
The Possible Mechanism of Amyloid Transformation Based on the Geometrical Parameters of Early-Stage Intermediate in Silico Model for Protein Folding.
- Published in:
- International Journal of Molecular Sciences, 2022, v. 23, n. 16, p. 9502, doi. 10.3390/ijms23169502
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- Publication type:
- Article
Congo Red as a Supramolecular Carrier System for Doxorubicin: An Approach to Understanding the Mechanism of Action.
- Published in:
- International Journal of Molecular Sciences, 2022, v. 23, n. 16, p. 8935, doi. 10.3390/ijms23168935
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- Publication type:
- Article
On the Dependence of Prion and Amyloid Structure on the Folding Environment.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 24, p. 13494, doi. 10.3390/ijms222413494
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- Publication type:
- Article
In Silico Modeling of the Influence of Environment on Amyloid Folding Using FOD-M Model.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 19, p. 10587, doi. 10.3390/ijms221910587
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- Publication type:
- Article
Solubility and Aggregation of Selected Proteins Interpreted on the Basis of Hydrophobicity Distribution.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 9, p. 5002, doi. 10.3390/ijms22095002
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- Publication type:
- Article
Model of Environmental Membrane Field for Transmembrane Proteins.
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- International Journal of Molecular Sciences, 2021, v. 22, n. 7, p. 3619, doi. 10.3390/ijms22073619
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- Publication type:
- Article
Downhill, Ultrafast and Fast Folding Proteins Revised.
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- International Journal of Molecular Sciences, 2020, v. 21, n. 20, p. 7632, doi. 10.3390/ijms21207632
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- Publication type:
- Article
The Structure of Amyloid Versus the Structure of Globular Proteins.
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- International Journal of Molecular Sciences, 2020, v. 21, n. 13, p. 4683, doi. 10.3390/ijms21134683
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- Publication type:
- Article
Different Synergy in Amyloids and Biologically Active Forms of Proteins.
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- International Journal of Molecular Sciences, 2019, v. 20, n. 18, p. 4436, doi. 10.3390/ijms20184436
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- Publication type:
- Article
Filamentous Aggregates of Tau Proteins Fulfil Standard Amyloid Criteria Provided by the Fuzzy Oil Drop (FOD) Model.
- Published in:
- International Journal of Molecular Sciences, 2018, v. 19, n. 10, p. 2910, doi. 10.3390/ijms19102910
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- Publication type:
- Article
Structural Interface Forms and Their Involvement in Stabilization of Multidomain Proteins or Protein Complexes.
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- International Journal of Molecular Sciences, 2016, v. 17, n. 10, p. 1741, doi. 10.3390/ijms17101741
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- Publication type:
- Article
Intermediates in the Protein Folding Process: A Computational Model.
- Published in:
- International Journal of Molecular Sciences, 2011, v. 12, n. 8, p. 4850, doi. 10.3390/ijms11084850
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- Publication type:
- Article
Chaperonin Structure -- The Large Multi-Subunit Protein Complex.
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- International Journal of Molecular Sciences, 2009, v. 10, n. 3, p. 844, doi. 10.3390/ijms10030844
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- Publication type:
- Article
Structural analysis of the Aβ(11–42) amyloid fibril based on hydrophobicity distribution.
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- Journal of Computer-Aided Molecular Design, 2019, v. 33, n. 7, p. 665, doi. 10.1007/s10822-019-00209-9
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- Publication type:
- Article
Statistical dictionaries for hypothetical in silico model of the early-stage intermediate in protein folding.
- Published in:
- Journal of Computer-Aided Molecular Design, 2015, v. 29, n. 7, p. 609, doi. 10.1007/s10822-015-9839-2
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- Publication type:
- Article
Catalytic residues in hydrolases: analysis of methods designed for ligand-binding site prediction.
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- Journal of Computer-Aided Molecular Design, 2011, v. 25, n. 2, p. 117, doi. 10.1007/s10822-010-9402-0
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- Publication type:
- Article
Force-field parametrization and molecular dynamics simulations of Congo red.
- Published in:
- Journal of Computer-Aided Molecular Design, 2004, v. 18, n. 1, p. 41, doi. 10.1023/B:JCAM.0000022562.76762.f0
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- Publication type:
- Article
An approach to understand the complexation of supramolecular dye Congo red with immunoglobulin L chain λ.
- Published in:
- Biopolymers, 2005, v. 77, n. 3, p. 155, doi. 10.1002/bip.20197
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- Publication type:
- Article
Local and long-range structural effects caused by the removal of the N-terminal polypeptide fragment from immunoglobulin L chain λ.
- Published in:
- Biopolymers, 2003, v. 69, n. 2, p. 189, doi. 10.1002/bip.10355
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- Publication type:
- Article
The use of the Congo red-related dye DBACR to recognize the heavy chain-derived abnormality of myeloma immunoglobulins.
- Published in:
- Archivum Immunologiae & Therapiae Experimentalis, 2006, v. 54, n. 3, p. 217, doi. 10.1007/s00005-006-0024-0
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- Publication type:
- Article
Contribution to the Understanding of Protein–Protein Interface and Ligand Binding Site Based on Hydrophobicity Distribution—Application to Ferredoxin I and II Cases.
- Published in:
- Applied Sciences (2076-3417), 2021, v. 11, n. 18, p. 8514, doi. 10.3390/app11188514
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- Publication type:
- Article
New insights into disordered proteins and regions according to the FOD-M model.
- Published in:
- PLoS ONE, 2022, v. 17, n. 10, p. 1, doi. 10.1371/journal.pone.0275300
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- Publication type:
- Article
Prediction of Functional Sites Based on the Fuzzy Oil Drop Model.
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- PLoS Computational Biology, 2007, v. 3, n. 5, p. e94, doi. 10.1371/journal.pcbi.0030094
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- Publication type:
- Article
Fragment Aβ(18-41) presented within the CDR3 loop region of a shark immunoglobulin new antigen receptor single-variable domain antibody analyzed based on the fuzzy oil drop model.
- Published in:
- Bio-Algorithms & Med-Systems, 2018, v. 14, n. 3, p. N.PAG, doi. 10.1515/bams-2018-0028
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- Publication type:
- Article
Comparison of the structure of Aβ(1-40) amyloid with the one in complex with polyphenol ε-viniferin glucoside (EVG).
- Published in:
- Bio-Algorithms & Med-Systems, 2018, v. 14, n. 2, p. N.PAG, doi. 10.1515/bams-2018-0008
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- Publication type:
- Article
Chain-chain complexation and heme binding in haemoglobin with respect to the hydrophobic core structure.
- Published in:
- Bio-Algorithms & Med-Systems, 2017, v. 13, n. 4, p. 179, doi. 10.1515/bams-2017-0024
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- Publication type:
- Article
Chromatin 3D - will it make understanding of cancer transformation finally possible?
- Published in:
- Bio-Algorithms & Med-Systems, 2018, v. 14, n. 1, p. 1, doi. 10.1515/bams-2018-0002
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- Publication type:
- Article