Works by Ingvarsson, Pär K.

Results: 104

Variation in Mutation Rate and Polymorphism Among Mitochondrial Genes of Silene vulgaris.

Published in:

Molecular Biology & Evolution, 2007, v. 24, n. 8, p. 1783, doi. 10.1093/molbev/msm106

By:

Barr, Camille M.;
Keller, Stephen R.;
Ingvarsson, Pär K.;
Sloan, Daniel B.;
Taylor, Douglas R.

Publication type:

Article

Gene Expression and Protein Length Influence Codon Usage and Rates of Sequence Evolution in Populus tremula.

Published in:

Molecular Biology & Evolution, 2007, v. 24, n. 3, p. 836

By:

Ingvarsson, Pär K.

Publication type:

Article

Molecular Population Genetics of Herbivore-induced Protease Inhibitor Genes in European Aspen (Populus tremula L., Salicaceae).

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 9, p. 1802, doi. 10.1093/molbev/msi171

By:

Ingvarsson, Pär K.

Publication type:

Article

Molecular Evolution of Insertions and Deletion in the Chloroplast Genome of Silene.

Published in:

Molecular Biology & Evolution, 2003, v. 20, n. 11, p. 1737, doi. 10.1093/molbev/msg163

By:

Ingvarsson, Pär K.;
Ribstein, Sarah;
Taylor, Douglas R.

Publication type:

Article

Increased genetic divergence between two closely related fir species in areas of range overlap.

Published in:

Ecology & Evolution (20457758), 2014, v. 4, n. 7, p. 1019, doi. 10.1002/ece3.1007

By:

Wang, Jing;
Abbott, Richard J.;
Ingvarsson, Pär K.;
Liu, Jianquan

Publication type:

Article

Whole‐genome resequencing facilitates the development of a 50K single nucleotide polymorphism genotyping array for Scots pine (Pinus sylvestris L.) and its transferability to other pine species.

Published in:

Plant Journal, 2024, v. 117, n. 3, p. 944, doi. 10.1111/tpj.16535

By:

Estravis Barcala, Maximiliano;
van der Valk, Tom;
Chen, Zhiqiang;
Funda, Tomas;
Chaudhary, Rajiv;
Klingberg, Adam;
Fundova, Irena;
Suontama, Mari;
Hallingbäck, Henrik;
Bernhardsson, Carolina;
Nystedt, Björn;
Ingvarsson, Pär K.;
Sherwood, Ellen;
Street, Nathaniel;
Gyllensten, Ulf;
Nilsson, Ove;
Wu, Harry X.

Publication type:

Article

Genome‐wide association study identified novel candidate loci affecting wood formation in Norway spruce.

Published in:

Plant Journal, 2019, v. 100, n. 1, p. 83, doi. 10.1111/tpj.14429

By:

Baison, John;
Vidalis, Amaryllis;
Zhou, Linghua;
Chen, Zhi‐Qiang;
Li, Zitong;
Sillanpää, Mikko J.;
Bernhardsson, Carolina;
Scofield, Douglas;
Forsberg, Nils;
Grahn, Thomas;
Olsson, Lars;
Karlsson, Bo;
Wu, Harry;
Ingvarsson, Pär K.;
Lundqvist, Sven‐Olof;
Niittylä, Totte;
García‐Gil, M Rosario

Publication type:

Article

Using association mapping to dissect the genetic basis of complex traits in plants.

Published in:

Briefings in Functional Genomics, 2010, v. 9, n. 2, p. 157, doi. 10.1093/bfgp/elp048

By:

Hall, David;
Tegström, Carolina;
Ingvarsson, Pär K.

Publication type:

Article

Evaluating the accuracy of genomic prediction of growth and wood traits in two Eucalyptus species and their F<sub>1</sub> hybrids.

Published in:

BMC Plant Biology, 2017, v. 17, p. 1, doi. 10.1186/s12870-017-1059-6

By:

Biyue Tan;
Grattapaglia, Dario;
Martins, Gustavo Salgado;
Ferreira, Karina Zamprogno;
Sundberg, Björn;
Ingvarsson, Pär K.

Publication type:

Article

Molecular Evolution of a Small Gene Family of Wound Inducible Kunitz Trypsin Inhibitors in Populus.

Published in:

Journal of Molecular Evolution, 2006, v. 63, n. 1, p. 108, doi. 10.1007/s00239-005-0249-2

By:

Talyzina, Nina M.;
Ingvarsson, Pär K.

Publication type:

Article

Population subdivision and the HudsonKreitmanAguade test: testing for deviations from the neutral model in organelle genomes.

Published in:

Genetics Research, 2004, v. 83, n. 1, p. 31, doi. 10.1017/s0016672303006529

By:

PÄR K. INGVARSSON

Publication type:

Article

Linked selection shapes the landscape of genomic variation in three oak species.

Published in:

New Phytologist, 2022, v. 233, n. 1, p. 555, doi. 10.1111/nph.17793

By:

Liang, Yi‐Ye;
Shi, Yong;
Yuan, Shuai;
Zhou, Biao‐Feng;
Chen, Xue‐Yan;
An, Qing‐Qing;
Ingvarsson, Pär K.;
Plomion, Christophe;
Wang, Baosheng

Publication type:

Article

Integration of genome wide association studies and co‐expression networks reveal roles of PtoWRKY42‐PtoUGT76C1‐1 in trans‐zeatin metabolism and cytokinin sensitivity in poplar.

Published in:

New Phytologist, 2021, v. 231, n. 4, p. 1462, doi. 10.1111/nph.17469

By:

Song, Yuepeng;
Chen, Panfei;
Xuan, Anran;
Bu, Chenhao;
Liu, Peng;
Ingvarsson, Pär K.;
El‐Kassaby, Yousry A.;
Zhang, Deqiang

Publication type:

Article

Storage lipid accumulation is controlled by photoperiodic signal acting via regulators of growth cessation and dormancy in hybrid aspen.

Published in:

New Phytologist, 2018, v. 219, n. 2, p. 619, doi. 10.1111/nph.15197

By:

Grimberg, Åsa;
Lager, Ida;
Street, Nathaniel R.;
Robinson, Kathryn M.;
Marttila, Salla;
Mähler, Niklas;
Ingvarsson, Pär K.;
Bhalerao, Rishikesh P.

Publication type:

Article

Towards integration of population and comparative genomics in forest trees.

Published in:

New Phytologist, 2016, v. 212, n. 2, p. 338, doi. 10.1111/nph.14153

By:

Ingvarsson, Pär K.;
Hvidsten, Torgeir R.;
Street, Nathaniel R.

Publication type:

Article

A major locus controls local adaptation and adaptive life history variation in a perennial plant.

Published in:

Genome Biology, 2018, v. 19, n. 1, p. N.PAG, doi. 10.1186/s13059-018-1444-y

By:

Wang, Jing;
Ding, Jihua;
Tan, Biyue;
Robinson, Kathryn M.;
Michelson, Ingrid H.;
Johansson, Anna;
Nystedt, Björn;
Scofield, Douglas G.;
Nilsson, Ove;
Jansson, Stefan;
Street, Nathaniel R.;
Ingvarsson, Pär K.

Publication type:

Article

Linkage disequilibrium vs. pedigree: Genomic selection prediction accuracy in conifer species.

Published in:

PLoS ONE, 2020, v. 15, n. 6, p. 1, doi. 10.1371/journal.pone.0232201

By:

Thistlethwaite, Frances R.;
Gamal El-Dien, Omnia;
Ratcliffe, Blaise;
Klápště, Jaroslav;
Porth, Ilga;
Chen, Charles;
Stoehr, Michael U.;
Ingvarsson, Pär K.;
El-Kassaby, Yousry A.

Publication type:

Article

Quantifying adaptive evolution and the effects of natural selection across the Norway spruce genome.

Published in:

Molecular Ecology, 2023, v. 32, n. 19, p. 5288, doi. 10.1111/mec.17106

By:

Wang, Xi;
Ingvarsson, Pär K.

Publication type:

Article

Drivers of genomic landscapes of differentiation across a Populus divergence gradient.

Published in:

Molecular Ecology, 2023, v. 32, n. 15, p. 4348, doi. 10.1111/mec.17034

By:

Shang, Huiying;
Field, David L.;
Paun, Ovidiu;
Rendón‐Anaya, Martha;
Hess, Jaqueline;
Vogl, Claus;
Liu, Jianquan;
Ingvarsson, Pär K.;
Lexer, Christian;
Leroy, Thibault

Publication type:

Article

Genomic vulnerability to climate change in Quercus acutissima, a dominant tree species in East Asian deciduous forests.

Published in:

Molecular Ecology, 2023, v. 32, n. 7, p. 1639, doi. 10.1111/mec.16843

By:

Yuan, Shuai;
Shi, Yong;
Zhou, Biao‐Feng;
Liang, Yi‐Ye;
Chen, Xue‐Yan;
An, Qing‐Qing;
Fan, Yan‐Ru;
Shen, Zhao;
Ingvarsson, Pär K.;
Wang, Baosheng

Publication type:

Article

Killing two enemies with one stone? Genomics of resistance to two sympatric pathogens in Norway spruce.

Published in:

Molecular Ecology, 2021, v. 30, n. 18, p. 4433, doi. 10.1111/mec.16058

By:

Capador‐Barreto, Hernán D.;
Bernhardsson, Carolina;
Milesi, Pascal;
Vos, Ingrid;
Lundén, Karl;
Wu, Harry X.;
Karlsson, Bo;
Ingvarsson, Pär K.;
Stenlid, Jan;
Elfstrand, Malin

Publication type:

Article

Genome-wide association study to identify genomic loci associated with early vigor in bread wheat under simulated water deficit complemented with quantitative trait loci meta-analysis.

Published in:

G3: Genes | Genomes | Genetics, 2023, v. 13, n. 2, p. 1, doi. 10.1093/g3journal/jkac320

By:

Rahimi, Yousef;
Khahani, Bahman;
Jamali, Ali;
Alipour, Hadi;
Bihamta, Mohammad Reza;
Ingvarsson, Pär K.

Publication type:

Article

Inferring the Genomic Landscape of Recombination Rate Variation in European Aspen (Populus tremula).

Published in:

G3: Genes | Genomes | Genetics, 2020, v. 10, n. 1, p. 299, doi. 10.1534/g3.119.400504

By:

Apuli, Rami-Petteri;
Bernhardsson, Carolina;
Schiffthaler, Bastian;
Robinson, Kathryn M.;
Jansson, Stefan;
Street, Nathaniel R.;
Ingvarsson, Pär K.

Publication type:

Article

An Ultra-Dense Haploid Genetic Map for Evaluating the Highly Fragmented Genome Assembly of Norway Spruce (Picea abies).

Published in:

G3: Genes | Genomes | Genetics, 2019, v. 9, n. 5, p. 1623, doi. 10.1534/g3.118.200840

By:

Bernhardsson, Carolina;
Vidalis, Amaryllis;
Xi Wang;
Scofield, Douglas G.;
Schiffthaler, Bastian;
Baison, John;
Street, Nathaniel R.;
García-Gil, M. Rosario;
Ingvarsson, Pär K.

Publication type:

Article

Demography and Natural Selection Have Shaped Genetic Variation in the Widely Distributed Conifer Norway Spruce (Picea abies).

Published in:

Genome Biology & Evolution, 2020, v. 12, n. 2, p. 3803, doi. 10.1093/gbe/evaa005

By:

Wang, Xi;
Bernhardsson, Carolina;
Ingvarsson, Pär K

Publication type:

Article

Single-Copy Genes as Molecular Markers for Phylogenomic Studies in Seed Plants.

Published in:

Genome Biology & Evolution, 2017, v. 9, n. 5, p. 1130, doi. 10.1093/gbe/evx070

By:

Zhen Li;
De La Torre, Amanda R.;
Sterck, Lieven;
Cánovas, Francisco M.;
Avila, Concepción;
Merino, Irene;
Cabezas, José Antonio;
Cervera, María Teresa;
Ingvarsson, Pär K.;
Van de Peer, Yves

Publication type:

Article

Genome-Wide Analysis Reveals Diverged Patterns of Codon Bias, Gene Expression, and Rates of Sequence Evolution in Picea Gene Families.

Published in:

Genome Biology & Evolution, 2015, v. 7, n. 4, p. 1002, doi. 10.1093/gbe/evv044

By:

De La Torre, Amanda R.;
Yao-Cheng Lin;
Van de Peer, Yves;
Ingvarsson, Pär K.

Publication type:

Article

Genome-wide analyses of the mung bean NAC gene family reveals orthologs, co-expression networking and expression profiling under abiotic and biotic stresses.

Published in:

BMC Plant Biology, 2022, v. 22, n. 1, p. 1, doi. 10.1186/s12870-022-03716-4

By:

Tariq, Rezwan;
Hussain, Ammara;
Tariq, Arslan;
Khalid, Muhammad Hayder Bin;
Khan, Imran;
Basim, Huseyin;
Ingvarsson, Pär K.

Publication type:

Article

The genetic basis of adaptation in phenology in an introduced population of Black Cottonwood (Populus trichocarpa, Torr. & Gray).

Published in:

BMC Plant Biology, 2021, v. 21, n. 1, p. 1, doi. 10.1186/s12870-021-03103-5

By:

Apuli, Rami-Petteri;
Richards, Thomas;
Rendón-Anaya, Martha;
Karacic, Almir;
Rönnberg-Wästljung, Ann-Christin;
Ingvarsson, Pär K.

Publication type:

Article

Genome-wide association mapping uncovers sex-associated copy number variation markers and female hemizygous regions on the W chromosome in Salix viminalis.

Published in:

BMC Genomics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12864-021-08021-2

By:

Hallingbäck, Henrik R.;
Pucholt, Pascal;
Ingvarsson, Pär K.;
Rönnberg-Wästljung, Ann Christin;
Berlin, Sofia

Publication type:

Article

Natural variation in the prolyl 4-hydroxylase gene PtoP4H9 contributes to perennial stem growth in Populus.

Published in:

Plant Cell, 2023, v. 35, n. 11, p. 4046, doi. 10.1093/plcell/koad212

By:

Xiao, Liang;
Fang, Yuanyuan;
Zhang, He;
Quan, Mingyang;
Zhou, Jiaxuan;
Li, Peng;
Wang, Dan;
Ji, Li;
Ingvarsson, Pär K;
Wu, Harry X;
El-Kassaby, Yousry A;
Du, Qingzhang;
Zhang, Deqiang

Publication type:

Article

Evolutionary Origins of Pseudogenes and Their Association with Regulatory Sequences in Plants.

Published in:

Plant Cell, 2019, v. 31, n. 3, p. 563, doi. 10.1105/tpc.18.00601

By:

Xie, Jianbo;
Li, Ying;
Liu, Xiaomin;
Zhao, Yiyang;
Li, Bailian;
Ingvarsson, Pär K.;
1, Deqiang Zhang

Publication type:

Article

Genome-Wide Association Mapping of Mixed Linkage (1,3;1,4)-β-Glucan and Starch Contents in Rice Whole Grain.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.665745

By:

Panahabadi, Rahele;
Ahmadikhah, Asadollah;
McKee, Lauren S.;
Ingvarsson, Pär K.;
Farrokhi, Naser

Publication type:

Article

Characterization of Dynamic Regulatory Gene and Protein Networks in Wheat Roots Upon Perceiving Water Deficit Through Comparative Transcriptomics Survey.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.710867

By:

Rahimi, Yousef;
Ingvarsson, Pär K.;
Bihamta, Mohammad Reza;
Alipour, Hadi;
Taleei, Alireza;
Khoshnoodi Jabar Abadi, Shaghayegh

Publication type:

Article

Genomic insights into local adaptation and future climate-induced vulnerability of a keystone forest tree in East Asia.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-34206-8

By:

Sang, Yupeng;
Long, Zhiqin;
Dan, Xuming;
Feng, Jiajun;
Shi, Tingting;
Jia, Changfu;
Zhang, Xinxin;
Lai, Qiang;
Yang, Guanglei;
Zhang, Hongying;
Xu, Xiaoting;
Liu, Huanhuan;
Jiang, Yuanzhong;
Ingvarsson, Pär K.;
Liu, Jianquan;
Mao, Kangshan;
Wang, Jing

Publication type:

Article

Genomic analyses reveal natural selection on reproduction related genes between two closely related Populus (Salicaceae) species.

Published in:

Journal of Systematics & Evolution, 2023, v. 61, n. 5, p. 852, doi. 10.1111/jse.12911

By:

Tian, Yang;
Liu, Shu‐Yu;
Ingvarsson, Pär K.;
Zhao, Dan‐Dan;
Wang, Li;
Abuduhamiti, Baoerjiang;
Cai, Jin‐Feng;
Wu, Zhi‐Qiang;
Zhang, Jian‐Guo;
Wang, Zhao‐Shan

Publication type:

Article

BatchMap: A parallel implementation of the OneMap R package for fast computation of F<sub>1</sub> linkage maps in outcrossing species.

Published in:

PLoS ONE, 2017, v. 12, n. 12, p. 1, doi. 10.1371/journal.pone.0189256

By:

Schiffthaler, Bastian;
Bernhardsson, Carolina;
Ingvarsson, Pär K.;
Street, Nathaniel R.

Publication type:

Article

Populus tremula (European aspen) shows no evidence of sexual dimorphism.

Published in:

BMC Plant Biology, 2014, v. 14, n. 1, p. 2, doi. 10.1186/s12870-014-0276-5

By:

Robinson, Kathryn M.;
Delhomme, Nicolas;
Mähler, Niklas;
Schiffthaler, Bastian;
Önskog, Jenny;
Albrectsen, Benedicte R.;
Ingvarsson, Pär K.;
Hvidsten, Torgeir R.;
Jansson, Stefan;
Street, Nathaniel R.

Publication type:

Article

Pan-Genome Analysis Reveals Local Adaptation to Climate Driven by Introgression in Oak Species Open Access.

Published in:

Molecular Biology & Evolution, 2025, v. 42, n. 5, p. 1, doi. 10.1093/molbev/msaf088

By:

Liang, Yi-Ye;
Liu, Hui;
Lin, Qiong-Qiong;
Shi, Yong;
Zhou, Biao-Feng;
Wang, Jing-Shu;
Chen, Xue-Yan;
Shen, Zhao;
Qiao, Liang-Jing;
Niu, Jing-Wei;
Ling, Shao-Jun;
Luo, Wen-Ji;
Zhao, Wei;
Liu, Jian-Feng;
Kuang, Yuan-Wen;
Ingvarsson, Pär K;
Guo, Ya-Long;
Wang, Baosheng

Publication type:

Article

Evolution of the Correlated Genomic Variation Landscape Across a Divergence Continuum in the Genus Castanopsis.

Published in:

Molecular Biology & Evolution, 2024, v. 41, n. 9, p. 1, doi. 10.1093/molbev/msae191

By:

Chen, Xue-Yan;
Zhou, Biao-Feng;
Shi, Yong;
Liu, Hui;
Liang, Yi-Ye;
Ingvarsson, Pär K;
Wang, Baosheng

Publication type:

Article

Demographic History and Natural Selection Shape Patterns of Deleterious Mutation Load and Barriers to Introgression across Populus Genome.

Published in:

Molecular Biology & Evolution, 2022, v. 39, n. 2, p. 1, doi. 10.1093/molbev/msac008

By:

Liu, Shuyu;
Zhang, Lei;
Sang, Yupeng;
Lai, Qiang;
Zhang, Xinxin;
Jia, Changfu;
Long, Zhiqin;
Wu, Jiali;
Ma, Tao;
Mao, Kangshan;
Street, Nathaniel R;
Ingvarsson, Pär K;
Liu, Jianquan;
Wang, Jing

Publication type:

Article

Erratum to: Adaptive Introgression Facilitates Adaptation to High Latitudes in European Aspen (Populus Tremula L.).

Published in:

2022

By:

Rendón-Anaya, Martha;
Wilson, Jonathan;
Sveinsson, Sæmundur;
Fedorkov, Aleksey;
Cottrell, Joan;
Bailey, Mark E S;
Ruņǵis, Dainis;
Lexer, Christian;
Jansson, Stefan;
Robinson, Kathryn M;
Street, Nathaniel R;
Ingvarsson, Pär K

Publication type:

Correction Notice

Adaptive Introgression Facilitates Adaptation to High Latitudes in European Aspen (Populus tremula L.).

Published in:

Molecular Biology & Evolution, 2021, v. 38, n. 11, p. 5034, doi. 10.1093/molbev/msab229

By:

Rendón-Anaya, Martha;
Wilson, Jonathan;
Sveinsson, Sæmundur;
Fedorkov, Aleksey;
Cottrell, Joan;
Bailey, Mark E S;
Ruņis, Dainis;
Lexer, Christian;
Jansson, Stefan;
Robinson, Kathryn M;
Street, Nathaniel R;
Ingvarsson, Pär K

Publication type:

Article

Variation in Linked Selection and Recombination Drive Genomic Divergence during Allopatric Speciation of European and American Aspens.

Published in:

Molecular Biology & Evolution, 2016, v. 33, n. 7, p. 1754, doi. 10.1093/molbev/msw051

By:

Jing Wang;
Street, Nathaniel R.;
Scofield, Douglas G.;
Ingvarsson, Pär K.

Publication type:

Article

Natural Selection on Synonymous and Nonsynonymous Mutations Shapes Patterns of Polymorphism in Populus tremula.

Published in:

Molecular Biology & Evolution, 2010, v. 27, n. 3, p. 650, doi. 10.1093/molbev/msp255

By:

Ingvarsson, Pär K.

Publication type:

Article

Response to Waterlogging Stress in Wild and Domesticated Accessions of Timothy (Phleum pratense) and Its Relatives P. alpinum and P. nodosum.

Published in:

Plants (2223-7747), 2023, v. 12, n. 23, p. 4033, doi. 10.3390/plants12234033

By:

Moreno, Silvana;
Bedada, Girma;
Rahimi, Yousef;
Ingvarsson, Pär K.;
Westerbergh, Anna;
Lundquist, Per-Olof

Publication type:

Article

Phenotypic Diversity in Domesticated and Wild Timothy Grass, and Closely Related Species for Forage Breeding.

Published in:

Plants (2223-7747), 2023, v. 12, n. 19, p. 3494, doi. 10.3390/plants12193494

By:

Rahimi, Yousef;
Bedada, Girma;
Moreno, Silvana;
Gustavsson, Anne-Maj;
Ingvarsson, Pär K.;
Westerbergh, Anna

Publication type:

Article

Whole genome duplication in coast redwood ( Sequoia sempervirens) and its implications for explaining the rarity of polyploidy in conifers.

Published in:

New Phytologist, 2016, v. 211, n. 1, p. 186, doi. 10.1111/nph.13930

By:

Scott, Alison Dawn;
Stenz, Noah W. M.;
Ingvarsson, Pär K.;
Baum, David A.

Publication type:

Article

Analysis of conifer FLOWERING LOCUS T/ TERMINAL FLOWER1-like genes provides evidence for dramatic biochemical evolution in the angiosperm FT lineage.

Published in:

New Phytologist, 2012, v. 196, n. 4, p. 1260, doi. 10.1111/j.1469-8137.2012.04332.x

By:

Klintenäs, Maria;
Pin, Pierre A.;
Benlloch, Reyes;
Ingvarsson, Pär K.;
Nilsson, Ove

Publication type:

Article

Association genetics of complex traits in plants.

Published in:

New Phytologist, 2011, v. 189, n. 4, p. 909, doi. 10.1111/j.1469-8137.2010.03593.x

By:

Ingvarsson, Pär K.;
Street, Nathaniel R.

Publication type:

Article