Works by Ignacio-Espinoza, J. Cesar

Results: 10

Sequencing platform and library preparation choices impact viral metagenomes.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-320

By:

Solonenko, Sergei A.;
Ignacio-Espinoza, J. César;
Alberti, Adriana;
Cruaud, Corinne;
Hallam, Steven;
Konstantinidis, Kostas;
Tyson, Gene;
Wincker, Patrick;
Sullivan, Matthew B.

Publication type:

Article

Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-09106-z

By:

Sieradzki, Ella T.;
Ignacio-Espinoza, J. Cesar;
Needham, David M.;
Fichot, Erin B.;
Fuhrman, Jed A.

Publication type:

Article

Viral tagging reveals discrete populations in Synechococcus viral genome sequence space.

Published in:

Nature, 2014, v. 513, n. 7517, p. 242, doi. 10.1038/nature13459

By:

Deng, Li;
Ignacio-Espinoza, J. Cesar;
Gregory, Ann C.;
Poulos, Bonnie T.;
Weitz, Joshua S.;
Hugenholtz, Philip;
Sullivan, Matthew B.

Publication type:

Article

Closing the gaps on the viral photosystem-I psaDCAB gene organization.

Published in:

Environmental Microbiology, 2015, v. 17, n. 12, p. 5100, doi. 10.1111/1462-2920.13036

By:

Roitman, Sheila;
Flores ‐ Uribe, José;
Philosof, Alon;
Knowles, Ben;
Rohwer, Forest;
Ignacio ‐ Espinoza, J. Cesar;
Sullivan, Matthew B.;
Cornejo ‐ Castillo, Francisco M.;
Sánchez, Pablo;
Acinas, Silvia G.;
Dupont, Chris L.;
Béjà, Oded

Publication type:

Article

Phylogenomics of T4 cyanophages: lateral gene transfer in the 'core' and origins of host genes.

Published in:

Environmental Microbiology, 2012, v. 14, n. 8, p. 2113, doi. 10.1111/j.1462-2920.2012.02704.x

By:

Ignacio-Espinoza, J. Cesar;
Sullivan, Matthew B.

Publication type:

Article

SARS-CoV-2 sequencing for public health impact.

Published in:

Medical Laboratory Observer (MLO), 2022, v. 54, n. 6, p. 8

By:

Noah Kojima;
Eugenia Khorosheva;
Lopez, Lauren;
Hanewich-Hollatz, Mikhail;
Ignacio-Espinoza, J. Cesar;
Brobeck, Matthew;
Chen, Janet;
Geluz, Matthew;
Hess, Victoria;
Quasem, Sophia;
Sandhu, Nabjot;
Salfati, Elias;
Shacreaw, Maria;
Way, George;
Zhiyi Xie;
Slepnev, Vladimir;
Klausner, Jeffrey D.

Publication type:

Article

Life-Style and Genome Structure of Marine Pseudoalteromonas Siphovirus B8b Isolated from the Northwestern Mediterranean Sea.

Published in:

PLoS ONE, 2015, v. 10, n. 1, p. 1, doi. 10.1371/journal.pone.0114829

By:

Lara, Elena;
Holmfeldt, Karin;
Solonenko, Natalie;
Sà, Elisabet Laia;
Ignacio-Espinoza, J. Cesar;
Cornejo-Castillo, Francisco M.;
Verberkmoes, Nathan C.;
Vaqué, Dolors;
Sullivan, Matthew B.;
Acinas, Silvia G.

Publication type:

Article

Genomic differentiation among wild cyanophages despite widespread horizontal gene transfer.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3286-x

By:

Gregory, Ann C.;
Solonenko, Sergei A.;
Ignacio-Espinoza, J. Cesar;
LaButti, Kurt;
Copeland, Alex;
Sudek, Sebastian;
Maitland, Ashley;
Chittick, Lauren;
dos Santos, Filipa;
Weitz, Joshua S.;
Worden, Alexandra Z.;
Woyke, Tanja;
Sullivan, Matthew B.

Publication type:

Article

Local monitoring of SARS-CoV-2 variants in two large California counties in 2021.

Published in:

Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-21481-0

By:

Kojima, Noah;
Khorosheva, Eugenia;
Lopez, Lauren;
Hanewich-Hollatz, Mikhail;
Ignacio-Espinoza, J. Cesar;
Brobeck, Matthew;
Chen, Janet;
Geluz, Matthew;
Hess, Victoria;
Quasem, Sophia;
Sandhu, Nabjot;
Salfati, Elias;
Shacreaw, Maria;
Way, George;
Xie, Zhiyi;
Slepnev, Vladimir;
Klausner, Jeffrey D.

Publication type:

Article

Benchmarking microbial growth rate predictions from metagenomes.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2021, v. 15, n. 1, p. 183, doi. 10.1038/s41396-020-00773-1

By:

Long, Andrew M.;
Hou, Shengwei;
Ignacio-Espinoza, J. Cesar;
Fuhrman, Jed A.

Publication type:

Article