Works by IJzerman, Adriaan P.

Results: 72

A New Class of Fluorinated A2A Adenosine Receptor Agonist with Application to Last-Step Enzymatic [18F]Fluorination for PET Imaging.

Published in:

ChemBioChem, 2017, v. 18, n. 21, p. 2156, doi. 10.1002/cbic.201700382

By:

Lowe, Phillip T.;
Dall'Angelo, Sergio;
Mulder‐Krieger, Thea;
IJzerman, Adriaan P.;
Zanda, Matteo;
O'Hagan, David

Publication type:

Article

Allosteric modulation, thermodynamics and binding to wild-type and mutant (T277A) adenosine A1 receptors of LUF5831, a novel nonadenosine-like agonist.

Published in:

2006

By:

Heitman, Laura H.;
Mulder-Krieger, Thea;
Spanjersberg, Ronald F.;
von Frijtag Drabbe Künzel, Jacobien K.;
Dalpiaz, Alessandro;
IJzerman, Adriaan P.;
von Frijtag Drabbe Künzel, Jacobien K

Publication type:

journal article

Coupling of the human A1 adenosine receptor to different heterotrimeric G proteins: evidence for agonist-specific G protein activation.

Published in:

British Journal of Pharmacology, 2004, v. 143, n. 6, p. 705, doi. 10.1038/sj.bjp.0705925

By:

Cordeaux, Yolande;
IJzerman, Adriaan P.;
Hill, Stephen J.

Publication type:

Article

Mutations inducing divergent shifts of constitutive activity reveal different modes of binding among catecholamine analogues to the Β[sub2]-adrenergic receptor.

Published in:

British Journal of Pharmacology, 2002, v. 135, n. 7, p. 1715, doi. 10.1038/sj.bjp.0704622

By:

Carmine, Renata Del;
Ambrosio, Caterina;
Sbraccia, Maria;
Cotecchia, Susanna;
Ijzerman, Adriaan P.;
Costa, Tommaso

Publication type:

Article

Proteochemometric modelling coupled to in silico target prediction: an integrated approach for the simultaneous prediction of polypharmacology and binding affinity/potency of small molecules.

Published in:

Journal of Cheminformatics, 2015, v. 7, n. 1, p. 1, doi. 10.1186/s13321-015-0063-9

By:

Paricharak, Shardul;
Cortés-Ciriano, Isidro;
IJzerman, Adriaan P.;
Malliavin, Thérèse E.;
Bender, Andreas

Publication type:

Article

Small‐molecule CEM3 strengthens single‐cell oscillators in the suprachiasmatic nucleus.

Published in:

FASEB Journal, 2024, v. 38, n. 1, p. 1, doi. 10.1096/fj.202300597RR

By:

van Beurden, Anouk W.;
Tersteeg, Mayke M. H.;
Michel, Stephan;
van Veldhoven, Jaco P. D.;
IJzerman, Adriaan P.;
Rohling, Jos H. T.;
Meijer, Johanna H.

Publication type:

Article

Cancer‐related somatic mutations alter adenosine A1 receptor pharmacology—A focus on mutations in the loops and C‐terminus.

Published in:

FASEB Journal, 2022, v. 36, n. 6, p. 1, doi. 10.1096/fj.202200203RR

By:

Wang, Xuesong;
Jespers, Willem;
de Waal, Just J.;
Wolff, Kim A. N.;
van Uden, Liedeke;
IJzerman, Adriaan P.;
van Westen, Gerard J. P.;
Heitman, Laura H.

Publication type:

Article

3DDPDs: describing protein dynamics for proteochemometric bioactivity prediction. A case for (mutant) G protein-coupled receptors.

Published in:

Journal of Cheminformatics, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13321-023-00745-5

By:

Gorostiola González, Marina;
van den Broek, Remco L.;
Braun, Thomas G. M.;
Chatzopoulou, Magdalini;
Jespers, Willem;
IJzerman, Adriaan P.;
Heitman, Laura H.;
van Westen, Gerard J. P.

Publication type:

Article

DrugEx v3: scaffold-constrained drug design with graph transformer-based reinforcement learning.

Published in:

Journal of Cheminformatics, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13321-023-00694-z

By:

Liu, Xuhan;
Ye, Kai;
van Vlijmen, Herman W. T.;
IJzerman, Adriaan P.;
van Westen, Gerard J. P.

Publication type:

Article

DrugEx v2: de novo design of drug molecules by Pareto-based multi-objective reinforcement learning in polypharmacology.

Published in:

Journal of Cheminformatics, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13321-021-00561-9

By:

Liu, Xuhan;
Ye, Kai;
van Vlijmen, Herman W. T.;
Emmerich, Michael T. M.;
IJzerman, Adriaan P.;
van Westen, Gerard J. P.

Publication type:

Article

Chemogenomics: Looking at biology through the lens of chemistry.

Published in:

Statistical Analysis & Data Mining, 2009, v. 2, n. 3, p. 149, doi. 10.1002/sam.10046

By:

Doddareddy, Munikumar R.;
van Westen, Gerard J. P.;
van der Horst, Eelke;
Peironcely, Julio E.;
Corthals, Frans;
Ijzerman, Adriaan P.;
Emmerich, Michael;
Jenkins, Jeremy L.;
Bender, Andreas

Publication type:

Article

A two-entropies analysis to identify functional positions in the transmembrane region of class A G protein-coupled receptors.

Published in:

Proteins, 2006, v. 63, n. 4, p. 1018, doi. 10.1002/prot.20899

By:

Ye, Kai;
Lameijer, Eric-Wubbo M.;
Beukers, Margot W.;
IJzerman, Adriaan P.

Publication type:

Article

Receptors coupling to G proteins: Is there a signal behind the sequence?

Published in:

Proteins, 2000, v. 41, n. 4, p. 448, doi. 10.1002/1097-0134(20001201)41:4<448::AID-PROT30>3.0.CO;2-C

By:

Horn, Florence;
van der Wenden, Eleonora M.;
Oliveira, Laerte;
IJzerman, Adriaan P.;
Vriend, Gerrit

Publication type:

Article

Multi-RELIEF: a method to recognize specificity determining residues from multiple sequence alignments using a Machine-Learning approach for feature weighting.

Published in:

Bioinformatics, 2008, v. 24, n. 1, p. 18, doi. 10.1093/bioinformatics/btm537

By:

Kai Ye;
K. Anton Feenstra;
Jaap Heringa;
Adriaan P. IJzerman;
Elena Marchiori

Publication type:

Article

An efficient, versatile and scalable pattern growth approach to mine frequent patterns in unaligned protein sequences.

Published in:

Bioinformatics, 2007, v. 23, n. 6, p. 687

By:

Kai Ye;
Walter A. Kosters;
Adriaan P. IJzerman

Publication type:

Article

Novel natural and synthetic inhibitors of solute carriers SGLT1 and SGLT2.

Published in:

Pharmacology Research & Perspectives, 2019, v. 7, n. 4, p. N.PAG, doi. 10.1002/prp2.504

By:

Oranje, Paul;
Gouka, Robin;
Burggraaff, Lindsey;
Vermeer, Mario;
Chalet, Clément;
Duchateau, Guus;
Pijl, Pieter;
Geldof, Marian;
Roo, Niels;
Clauwaert, Fenja;
Vanpaeschen, Toon;
Nicolaï, Johan;
Bruyn, Tom;
Annaert, Pieter;
IJzerman, Adriaan P.;
Westen, Gerard J. P.

Publication type:

Article

Computational Characterization of Membrane Proteins as Anticancer Targets: Current Challenges and Opportunities.

Published in:

International Journal of Molecular Sciences, 2024, v. 25, n. 7, p. 3698, doi. 10.3390/ijms25073698

By:

Gorostiola González, Marina;
Rakers, Pepijn R. J.;
Jespers, Willem;
IJzerman, Adriaan P.;
Heitman, Laura H.;
van Westen, Gerard J. P.

Publication type:

Article

MPP + -Induced Changes in Cellular Impedance as a Measure for Organic Cation Transporter (SLC22A1-3) Activity and Inhibition.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 3, p. 1203, doi. 10.3390/ijms23031203

By:

Mocking, Tamara A. M.;
Sijben, Hubert J.;
Vermeulen, Yimé W.;
IJzerman, Adriaan P.;
Heitman, Laura H.

Publication type:

Article

Data-driven approaches used for compound library design, hit triage and bioactivity modeling in high-throughput screening.

Published in:

Briefings in Bioinformatics, 2018, v. 19, n. 2, p. 277, doi. 10.1093/bib/bbw105

By:

Paricharak, Shardul;
Méndez-Lucio, Oscar;
Ravindranath, Aakash Chavan;
Bender, Andreas;
IJzerman, Adriaan P.;
van Westen, Gerard J. P.

Publication type:

Article

A two-state model for the kinetics of competitive radioligand binding.

Published in:

2018

By:

Guo, Dong;
Peletier, Lambertus A.;
Bridge, Lloyd;
Keur, Wesley;
de Vries, Henk;
Zweemer, Annelien;
Heitman, Laura H.;
IJzerman, Adriaan P.

Publication type:

journal article

Molecular mechanism of positive allosteric modulation of the metabotropic glutamate receptor 2 by JNJ-46281222.

Published in:

2016

By:

Doornbos, Maarten L J;
Pérez ‐ Benito, Laura;
Tresadern, Gary;
Mulder ‐ Krieger, Thea;
Biesmans, Ilse;
Trabanco, Andrés A;
Cid, Jose María;
Lavreysen, Hilde;
IJzerman, Adriaan P;
Heitman, Laura H;
Pérez-Benito, Laura;
Mulder-Krieger, Thea;
Trabanco, Andrés A;
Cid, Jose María

Publication type:

journal article

Characterization of 12 GnRH peptide agonists - a kinetic perspective.

Published in:

2016

By:

Nederpelt, Indira;
Georgi, Victoria;
Schiele, Felix;
Nowak ‐ Reppel, Katrin;
Fernández ‐ Montalván, Amaury E.;
IJzerman, Adriaan P.;
Heitman, Laura H.;
Nowak-Reppel, Katrin;
Fernández-Montalván, Amaury E

Publication type:

journal article

Molecular mechanism of allosteric modulation at GPCRs: insight from a binding kinetics study at the human A1 adenosine receptor.

Published in:

2014

By:

Guo, Dong;
Venhorst, Suzanne N;
Massink, Arnault;
van Veldhoven, Jacobus P D;
Vauquelin, Georges;
IJzerman, Adriaan P;
Heitman, Laura H

Publication type:

journal article

Molecular mechanism of allosteric modulation at GPCRs: insight from a binding kinetics study at the human A1 adenosine receptor.

Published in:

British Journal of Pharmacology, 2014, v. 171, n. 23, p. 5295, doi. 10.1111/bph.12836

By:

Guo, Dong;
Venhorst, Suzanne N;
Massink, Arnault;
Veldhoven, Jacobus P D;
Vauquelin, Georges;
IJzerman, Adriaan P;
Heitman, Laura H

Publication type:

Article

Effects of pyrazole partial agonists on HCA(2) -mediated flushing and VLDL-triglyceride levels in mice.

Published in:

2012

By:

Li Z;
Blad CC;
van der Sluis RJ;
de Vries H;
Van Berkel TJ;
Ijzerman AP;
Hoekstra M;
Li, Zhaosha;
Blad, Clara C;
van der Sluis, Ronald J;
de Vries, Henk;
Van Berkel, Theo J C;
Ijzerman, Adriaan P;
Hoekstra, Menno

Publication type:

journal article

Effects of pyrazole partial agonists on HCA2-mediated flushing and VLDL-triglyceride levels in mice.

Published in:

British Journal of Pharmacology, 2012, v. 167, n. 4, p. 818, doi. 10.1111/j.1476-5381.2012.02039.x

By:

Li, Zhaosha;
Blad, Clara C;
van der Sluis, Ronald J;
de Vries, Henk;
Van Berkel, Theo JC;
IJzerman, Adriaan P;
Hoekstra, Menno

Publication type:

Article

Functional efficacy of adenosine A₂A receptor agonists is positively correlated to their receptor residence time.

Published in:

2012

By:

Guo D;
Mulder-Krieger T;
IJzerman AP;
Heitman LH;
Guo, Dong;
Mulder-Krieger, Thea;
IJzerman, Adriaan P;
Heitman, Laura H

Publication type:

journal article

Functional efficacy of adenosine A2A receptor agonists is positively correlated to their receptor residence time.

Published in:

British Journal of Pharmacology, 2012, v. 166, n. 6, p. 1846, doi. 10.1111/j.1476-5381.2012.01897.x

By:

Guo, Dong;
Mulder-Krieger, Thea;
IJzerman, Adriaan P;
Heitman, Laura H

Publication type:

Article

A3 Adenosine Receptor Allosteric Modulator Induces an Anti-Inflammatory Effect: In Vivo Studies and Molecular Mechanism of Action.

Published in:

Mediators of Inflammation, 2014, v. 2014, p. 1, doi. 10.1155/2014/708746

By:

Cohen, Shira;
Barer, Faina;
Bar-Yehuda, Sara;
IJzerman, Adriaan P.;
Jacobson, Kenneth A.;
Fishman, Pnina

Publication type:

Article

Mining protein dynamics from sets of crystal structures using 'consensus structures'.

Published in:

Protein Science: A Publication of the Protein Society, 2010, v. 19, n. 4, p. 742, doi. 10.1002/pro.350

By:

van Westen, Gerard J. P.;
Wegner, Jörg K.;
Bender, Andreas;
IJzerman, Adriaan P.;
van Vlijmen, Herman W. T.

Publication type:

Article

Tracing evolutionary pressure.

Published in:

Bioinformatics, 2008, v. 24, n. 7, p. 908, doi. 10.1093/bioinformatics/btn057

By:

Kai Ye;
Gert Vriend;
Adriaan P. IJzerman

Publication type:

Article

Label-free detection of transporter activity via GPCR signalling in living cells: A case for SLC29A1, the equilibrative nucleoside transporter 1.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-48829-3

By:

Vlachodimou, Anna;
IJzerman, Adriaan P.;
Heitman, Laura H.

Publication type:

Article

Impedance-Based Phenotypic Readout of Transporter Function: A Case for Glutamate Transporters.

Published in:

Frontiers in Pharmacology, 2022, v. 13, p. 1, doi. 10.3389/fphar.2022.872335

By:

Sijben, Hubert J.;
Dall' Acqua, Laura;
Liu, Rongfang;
Jarret, Abigail;
Christodoulaki, Eirini;
Onstein, Svenja;
Wolf, Gernot;
Verburgt, Simone J.;
Le Dévédec, Sylvia E.;
Wiedmer, Tabea;
Superti-Furga, Giulio;
IJzerman, Adriaan P.;
Heitman, Laura H.

Publication type:

Article

An Overview of Cell-Based Assay Platforms for the Solute Carrier Family of Transporters.

Published in:

Frontiers in Pharmacology, 2021, v. 12, p. 1, doi. 10.3389/fphar.2021.722889

By:

Dvorak, Vojtech;
Wiedmer, Tabea;
Ingles-Prieto, Alvaro;
Altermatt, Patrick;
Batoulis, Helena;
Bärenz, Felix;
Bender, Eckhard;
Digles, Daniela;
Dürrenberger, Franz;
Heitman, Laura H.;
IJzerman, Adriaan P.;
Kell, Douglas B.;
Kickinger, Stefanie;
Körzö, Daniel;
Leippe, Philipp;
Licher, Thomas;
Manolova, Vania;
Rizzetto, Riccardo;
Sassone, Francesca;
Scarabottolo, Lia

Publication type:

Article

A new hERG allosteric modulator rescues genetic and drug-induced long- QT syndrome phenotypes in cardiomyocytes from isogenic pairs of patient induced pluripotent stem cells.

Published in:

EMBO Molecular Medicine, 2016, v. 8, n. 9, p. 1065, doi. 10.15252/emmm.201606260

By:

Sala, Luca;
Yu, Zhiyi;
Ward‐van Oostwaard, Dorien;
Veldhoven, Jacobus PD;
Moretti, Alessandra;
Laugwitz, Karl‐Ludwig;
Mummery, Christine L;
IJzerman, Adriaan P;
Bellin, Milena

Publication type:

Article

Deciphering conformational selectivity in the A2A adenosine G protein-coupled receptor by free energy simulations.

Published in:

PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009152

By:

Jespers, Willem;
Heitman, Laura H.;
IJzerman, Adriaan P.;
Sotelo, Eddy;
van Westen, Gerard J. P.;
Åqvist, Johan;
Gutiérrez-de-Terán, Hugo

Publication type:

Article

The translational value of ligand‐receptor binding kinetics in drug discovery.

Published in:

British Journal of Pharmacology, 2024, v. 181, n. 21, p. 4117, doi. 10.1111/bph.16241

By:

Liu, Hongli;
Zhang, Haoran;
IJzerman, Adriaan P.;
Guo, Dong

Publication type:

Article

The Role of Target Binding Kinetics in Drug Discovery.

Published in:

ChemMedChem, 2015, v. 10, n. 11, p. 1793, doi. 10.1002/cmdc.201500310

By:

Guo, Dong;
Heitman, Laura H.;
IJzerman, Adriaan P.

Publication type:

Article

Evaluation of (4-Arylpiperidin-1-yl)cyclopentanecarboxamides As High-Affinity and Long-Residence-Time Antagonists for the CCR2 Receptor.

Published in:

ChemMedChem, 2015, v. 10, n. 7, p. 1249, doi. 10.1002/cmdc.201500058

By:

Vilums, Maris;
Zweemer, Annelien J. M.;
Dilanchian, Arian;
van Veldhoven, Jacobus P. D.;
de Vries, Henk;
Brussee, Johannes;
Saunders, John;
Stamos, Dean;
Heitman, Laura H.;
IJzerman, Adriaan P.

Publication type:

Article

Binding Kinetics of ZM241385 Derivatives at the Human Adenosine A2A Receptor.

Published in:

ChemMedChem, 2014, v. 9, n. 4, p. 752, doi. 10.1002/cmdc.201300474

By:

Guo, Dong;
Xia, Lizi;
van Veldhoven, Jacobus P. D.;
Hazeu, Marc;
Mocking, Tamara;
Brussee, Johannes;
IJzerman, Adriaan P.;
Heitman, Laura H.

Publication type:

Article

Cover Picture: Understanding of Molecular Substructures that Contribute to hERG K+ Channel Blockade: Synthesis and Biological Evaluation of E-4031 Analogues (ChemMedChem 1/2012).

Published in:

ChemMedChem, 2012, v. 7, n. 1, p. 1, doi. 10.1002/cmdc.201190057

By:

Vilums, Maris;
Overman, Jeroen;
Klaasse, Elisabeth;
Scheel, Olaf;
Brussee, Johannes;
IJzerman, Adriaan P.

Publication type:

Article

Understanding of Molecular Substructures that Contribute to hERG K+ Channel Blockade: Synthesis and Biological Evaluation of E-4031 Analogues.

Published in:

ChemMedChem, 2012, v. 7, n. 1, p. 107, doi. 10.1002/cmdc.201100366

By:

Vilums, Maris;
Overman, Jeroen;
Klaasse, Elisabeth;
Scheel, Olaf;
Brussee, Johannes;
IJzerman, Adriaan P.

Publication type:

Article

Substructure-Based Virtual Screening for Adenosine A2A Receptor Ligands.

Published in:

ChemMedChem, 2011, v. 6, n. 12, p. 2302, doi. 10.1002/cmdc.201100369

By:

van der Horst, Eelke;
van der Pijl, Rianne;
Mulder-Krieger, Thea;
Bender, Andreas;
IJzerman, Adriaan P.

Publication type:

Article

Prospective Validation of a Comprehensive In silico hERG Model and its Applications to Commercial Compound and Drug Databases.

Published in:

ChemMedChem, 2010, v. 5, n. 5, p. 716, doi. 10.1002/cmdc.201000024

By:

Doddareddy, Munikumar R.;
Klaasse, Elisabeth C.;
Shagufta;
IJzerman, Adriaan P.;
Bender, Andreas

Publication type:

Article

Exploring Chemical Substructures Essential for hERG K+ Channel Blockade by Synthesis and Biological Evaluation of Dofetilide Analogues.

Published in:

ChemMedChem, 2009, v. 4, n. 10, p. 1722, doi. 10.1002/cmdc.200900203

By:

Shagufta;
Guo, Dong;
Klaasse, Elisabeth;
de Vries, Henk;
Brussee, Johannes;
Nalos, Lukáš;
Rook, Martin B.;
Vos, Marc A.;
van der Heyden, Marcel A. G.;
IJzerman, Adriaan P.

Publication type:

Article

Selective Human Adenosine A3 Antagonists based on Pyrido[2,1- f]purine-2,4-diones: Novel Features of hA3 Antagonist Binding.

Published in:

ChemMedChem, 2008, v. 3, n. 1, p. 111, doi. 10.1002/cmdc.200700173

By:

Priego, Eva-María;
Pérez-Pérez, María-Jesús;
von Frijtag Drabbe Kuenzel, Jacobien K.;
de Vries, Henk;
IJzerman, Adriaan P.;
Camarasa, María-José;
Martín-Santamaría, Sonsoles

Publication type:

Article

A novel chemogenomics analysis of Gprotein-coupled receptors (GPCRs) and theirligands: a potential strategy for receptorde-orphanization.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 316, doi. 10.1186/1471-2105-11-316

By:

van der Horst, Eelke;
Peironcely, Julio E.;
IJzerman, Adriaan P.;
Beukers, Margot W.;
Lane, Jonathan R.;
van Vlijmen, Herman W. T.;
Emmerich, Michael T. M.;
Okuno, Yasushi;
Bender, Andreas

Publication type:

Article

Significantly Improved HIV Inhibitor Efficacy Prediction Employing Proteochemometric Models Generated From Antivirogram Data.

Published in:

PLoS Computational Biology, 2013, v. 9, n. 2, p. 1, doi. 10.1371/journal.pcbi.1002899

By:

van Westen, Gerard J. P.;
Hendriks, Alwin;
Wegner, Jörg K.;
IJzerman, Adriaan P.;
van Vlijmen, Herman W. T.;
Bender, Andreas

Publication type:

Article

Getting from A to B--exploring the activation motifs of the class B adhesion G protein-coupled receptor subfamily G member 4/GPR112.

Published in:

FASEB Journal, 2016, v. 30, n. 5, p. 1836, doi. 10.1096/fj.201500110

By:

Peeters, Miriam C.;
Mos, Iris;
Lenselink, Eelke B.;
Lucchesi, Martina;
IJzerman, Adriaan P.;
Schwartz, Thue W.

Publication type:

Article

GPCR structure and activation: an essential role for the first extracellular loop in activating the adenosine A2B receptor.

Published in:

FASEB Journal, 2011, v. 25, n. 2, p. 632, doi. 10.1096/fj.10-164319

By:

Peeters, Miriam C.;
Van Westen, Gerard J. P.;
Dong Guo;
Wisse, Lisanne E.;
Müller, Christa E.;
Beukers, Margot W.;
IJzerman, Adriaan P.

Publication type:

Article