Works by Hyten, David

Results: 49

Effects of demographic history on recombination hotspots in soybean.

Published in:

Plant Journal, 2024, v. 119, n. 2, p. 1030, doi. 10.1111/tpj.16814

By:

McConaughy, Samantha;
Amundsen, Keenan;
Hyten, David

Publication type:

Article

Soybean BARCSoySNP6K: An assay for soybean genetics and breeding research.

Published in:

Plant Journal, 2020, v. 104, n. 3, p. 800, doi. 10.1111/tpj.14960

By:

Song, Qijian;
Yan, Long;
Quigley, Charles;
Fickus, Edward;
Wei, He;
Chen, Linfeng;
Dong, Faming;
Araya, Susan;
Liu, Jinlong;
Hyten, David;
Pantalone, Vincent;
Nelson, Randall L.

Publication type:

Article

Comparing a Mixed Model Approach to Traditional Stability Estimators for Mapping Genotype by Environment Interactions and Yield Stability in Soybean [ Glycine max (L.) Merr.].

Published in:

Frontiers in Plant Science, 2021, v. 11, p. N.PAG, doi. 10.3389/fpls.2021.630175

By:

Happ, Mary M.;
Graef, George L.;
Wang, Haichuan;
Howard, Reka;
Posadas, Luis;
Hyten, David L.

Publication type:

Article

Recombination hotspots in soybean [Glycine max (L.) Merr.].

Published in:

G3: Genes | Genomes | Genetics, 2023, v. 13, n. 6, p. 1, doi. 10.1093/g3journal/jkad075

By:

McConaughy, Samantha;
Amundsen, Keenan;
Qijian Song;
Pantalone, Vince;
Hyten, David

Publication type:

Article

Generating High Density, Low Cost Genotype Data in Soybean [Glycine max (L.) Merr.].

Published in:

G3: Genes | Genomes | Genetics, 2019, v. 9, n. 7, p. 2153, doi. 10.1534/g3.119.400093

By:

Happ, Mary M.;
Haichuan Wang;
Graef, George L.;
Hyten, David L.

Publication type:

Article

Multi-Population Selective Genotyping to Identify Soybean [Glycine max (L.) Merr.] Seed Protein and Oil QTLs.

Published in:

G3: Genes | Genomes | Genetics, 2016, v. 6, n. 6, p. 1635, doi. 10.1534/g3.116.027656

By:

Phansak, Piyaporn;
Soonsuwon, Watcharin;
Hyten, David L.;
Song, Qijian;
Cregan, Perry B.;
Graef, George L.;
Specht, James E.

Publication type:

Article

SNP Assay Development for Linkage Map Construction, Anchoring Whole-Genome Sequence, and Other Genetic and Genomic Applications in Common Bean.

Published in:

G3: Genes | Genomes | Genetics, 2015, v. 5, n. 11, p. 2285, doi. 10.1534/g3.115.020594

By:

Qijian Song;
Gaofeng Jia;
Hyten, David L.;
Jenkins, Jerry;
Eun-Young Hwang;
Schroeder, Steven G.;
Osorno, Juan M.;
Schmutz, Jeremy;
Jackson, Scott A.;
McClean, Phillip E.;
Cregan, Perry B.

Publication type:

Article

Fingerprinting Soybean Germplasm and Its Utility in Genomic Research.

Published in:

G3: Genes | Genomes | Genetics, 2015, v. 5, n. 10, p. 1999, doi. 10.1534/g3.115.019000

By:

Qijian Song;
Hyten, David L.;
Gaofeng Jia;
Quigley, Charles V.;
Fickus, Edward W.;
Nelson, Randall L.;
Cregan, Perry B.

Publication type:

Article

Molecular Characterization of Resistance to Soybean Rust (Phakopsora pachyrhizi Syd. & Syd.) in Soybean Cultivar DT 2000 (PI 635999).

Published in:

PLoS ONE, 2016, v. 11, n. 12, p. 1, doi. 10.1371/journal.pone.0164493

By:

Vuong, Tri D.;
Walker, David R.;
Nguyen, Binh T.;
Nguyen, Tuyet T.;
Dinh, Hoan X.;
Hyten, David L.;
Cregan, Perry B.;
Sleper, David A.;
Lee, Jeong D.;
Shannon, James G.;
Nguyen, Henry T.

Publication type:

Article

Structural and Functional Divergence of a 1-Mb Duplicated Region in the Soybean (Glycine max) Genome and Comparison to an Orthologous Region from Phaseolus vulgaris.

Published in:

Plant Cell, 2010, v. 22, n. 8, p. 2545, doi. 10.1105/tpc.110.074229

By:

Lin, Jer-Young;
Stupar, Robert M.;
Hans, Christian;
Hyten, David L.;
Jackson, Scott A.

Publication type:

Article

Candidate Genes Modulating Reproductive Timing in Elite US Soybean Lines Identified in Soybean Alleles of Arabidopsis Flowering Orthologs With Divergent Latitude Distribution.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.889066

By:

Dietz, Nicholas;
Chan, Yen On;
Scaboo, Andrew;
Graef, George;
Hyten, David;
Happ, Mary;
Diers, Brian;
Lorenz, Aaron;
Wang, Dechun;
Joshi, Trupti;
Bilyeu, Kristin

Publication type:

Article

Genomic Markers Associated With Soybean Resistance to the Stem Borer, Dectes texanus (Coleoptera: Cerambycidae).

Published in:

Plant Direct, 2025, v. 9, n. 3, p. 1, doi. 10.1002/pld3.70040

By:

Johnson, Sarah;
Hyten, David

Publication type:

Article

Development of molecular inversion probes for soybean progeny genomic selection genotyping.

Published in:

Plant Genome, 2023, v. 16, n. 1, p. 1, doi. 10.1002/tpg2.20270

By:

Wang, Haichuan;
Campbell, Benjamin;
Happ, Mary;
McConaughy, Samantha;
Lorenz, Aaron;
Amundsen, Keenan;
Song, Qijian;
Pantalone, Vincent;
Hyten, David

Publication type:

Article

Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01.

Published in:

BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-015-2344-0

By:

Qijian Song;
Jenkins, Jerry;
Gaofeng Jia;
Hyten, David L.;
Pantalone, Vince;
Jackson, Scott A.;
Schmutz, Jeremy;
Cregan, Perry B.

Publication type:

Article

A genome-wide association study of seed protein and oil content in soybean.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-1

By:

Eun-Young Hwang;
Qijian Song;
Jia, Gaofeng;
Specht, James E.;
Hyten, David L.;
Costa, Jose;
Cregan, Perry B.

Publication type:

Article

Identification and validation of quantitative trait loci for seed yield, oil and protein contents in two recombinant inbred line populations of soybean.

Published in:

Molecular Genetics & Genomics, 2014, v. 289, n. 5, p. 935, doi. 10.1007/s00438-014-0865-x

By:

Wang, Xianzhi;
Jiang, Guo-Liang;
Green, Marci;
Scott, Roy;
Song, Qijian;
Hyten, David;
Cregan, Perry

Publication type:

Article

Structural Variants in the Soybean Genome Localize to Clusters of Biotic Stress-Response Genes<sup>1[W][OA]</sup>.

Published in:

Plant Physiology, 2012, v. 159, n. 4, p. 1295, doi. 10.1104/pp.112.194605

By:

McHale, Leah K.;
Haun, William J.;
Xu, Wayne W.;
Bhaskar, Pudota B.;
Anderson, Justin E.;
Hyten, David L.;
Gerhardt, Daniel J.;
Jeddeloh, Jeffrey A.;
Stupar, Robert M.

Publication type:

Article

The Composition and Origins of Genomic Variation among Individuals of the Soybean Reference Cultivar Williams 82.

Published in:

Plant Physiology, 2011, v. 155, n. 2, p. 645, doi. 10.1104/pp.110.166736

By:

Haun, William J.;
Hyten, David L.;
Xu, Wayne W.;
Gerhardt, Daniel J.;
Albert, Thomas J.;
Richmond, Todd;
Jeddeloh, Jeffrey A.;
Jia, Gaofeng;
Springer, Nathan M.;
Vance, Carroll P.;
Stupar, Robert M.

Publication type:

Article

An Integrative Approach to Genomic Introgression Mapping.

Published in:

Plant Physiology, 2010, v. 154, n. 1, p. 3, doi. 10.1104/pp.110.158949

By:

Severin, Andrew J.;
Peiffer, Gregory A.;
Xu, Wayne W.;
Hyten, David L.;
Bucciarelli, Bruna;
O'Rourke, Jamie A.;
Yung-Tsi Bolon;
Grant, David;
Farmer, Andrew D.;
May, Gregory D.;
Vance, Carroll P.;
Shoemaker, Randy C.;
Stupar, Robert M.

Publication type:

Article

Mapping the low palmitate fap1 mutation and validation of its effects in soybean oil and agronomic traits in three soybean populations.

Published in:

Theoretical & Applied Genetics, 2014, v. 127, n. 1, p. 97, doi. 10.1007/s00122-013-2204-8

By:

Cardinal, Andrea;
Whetten, Rebecca;
Wang, Sanbao;
Auclair, Jérôme;
Hyten, David;
Cregan, Perry;
Bachlava, Eleni;
Gillman, Jason;
Ramirez, Martha;
Dewey, Ralph;
Upchurch, Greg;
Miranda, Lilian;
Burton, Joseph

Publication type:

Article

Mapping soybean aphid resistance genes in PI 567598B.

Published in:

Theoretical & Applied Genetics, 2013, v. 126, n. 8, p. 2081, doi. 10.1007/s00122-013-2120-y

By:

Bales, Carmille;
Zhang, Guorong;
Liu, Menghan;
Mensah, Clarice;
Gu, Cuihua;
Song, Qijian;
Hyten, David;
Cregan, Perry;
Wang, Dechun

Publication type:

Article

Molecular mapping of soybean rust resistance in soybean accession PI 561356 and SNP haplotype analysis of the Rpp1 region in diverse germplasm.

Published in:

Theoretical & Applied Genetics, 2012, v. 125, n. 6, p. 1339, doi. 10.1007/s00122-012-1932-5

By:

Kim, Ki-Seung;
Unfried, Jair;
Hyten, David;
Frederick, Reid;
Hartman, Glen;
Nelson, Randall;
Song, Qijian;
Diers, Brian

Publication type:

Article

Fine mapping of the soybean aphid-resistance gene Rag2 in soybean PI 200538.

Published in:

Theoretical & Applied Genetics, 2010, v. 121, n. 3, p. 599, doi. 10.1007/s00122-010-1333-6

By:

Ki-Seung Kim;
Hill, Curtis B.;
Hartman, Glen L.;
Hyten, David L.;
Hudson, Matthew E.;
Diers, Brian W.

Publication type:

Article

Fine mapping the soybean aphid resistance gene Rag1 in soybean.

Published in:

Theoretical & Applied Genetics, 2010, v. 120, n. 5, p. 1063, doi. 10.1007/s00122-009-1234-8

By:

Ki-Seung Kim;
Bellendir, Stephanie;
Hudson, Karen A.;
Hill, Curtis B.;
Hartman, Glen L.;
Hyten, David L.;
Hudson, Matthew E.;
Diers, Brian W.

Publication type:

Article

SNP-PHAGE -- High throughput SNP discovery pipeline.

Published in:

BMC Bioinformatics, 2006, v. 7, p. 1, doi. 10.1186/1471-2105-7-468

By:

Matukumalli, Lakshmi K;
Grefenstette, John J;
Hyten, David L;
Ik-Young Choi;
Cregan, Perry B;
Van Tassell, Curtis P

Publication type:

Article

Application of machine learning in SNP discovery.

Published in:

BMC Bioinformatics, 2006, v. 7, p. 4, doi. 10.1186/1471-2105-7-4

By:

Matukumalli, Lakshmi K;
Grefenstette, John J;
Hyten, David L;
Ik-Young Choi;
Cregan, Perry B;
Van Tassell, Curtis P

Publication type:

Article

Molecular Mapping and Identification of Soybean Fatty Acid Modifier Quantitative Trait Loci.

Published in:

Journal of the American Oil Chemists' Society (JAOCS), 2004, v. 81, n. 12, p. 1115, doi. 10.1007/s11746-004-1027-z

By:

Hyten, David L.;
Pantalone, Vincent R.;
Saxton, Arnold M.;
Schmidt, Michael E.;
Sams, Carl E.

Publication type:

Article

Crop DNA extraction with lab-made magnetic nanoparticles.

Published in:

PLoS ONE, 2024, v. 19, n. 1, p. 1, doi. 10.1371/journal.pone.0296847

By:

Wang, Haichuan;
Zhao, Xueqi;
Tan, Li;
Zhu, Junwei;
Hyten, David

Publication type:

Article

High-throughput genotyping with the GoldenGate assay in the complex genome of soybean.

Published in:

Theoretical & Applied Genetics, 2008, v. 116, n. 7, p. 945, doi. 10.1007/s00122-008-0726-2

By:

Hyten, David;
Song, Qijian;
Choi, Ik-Young;
Yoon, Mun-Sup;
Specht, James;
Matukumalli, Lakshmi;
Nelson, Randall;
Shoemaker, Randy;
Young, Nevin;
Cregan, Perry

Publication type:

Article

A bumper crop of SNPs in soybean through high‐density genotyping‐by‐sequencing (HD‐GBS).

Published in:

Plant Biotechnology Journal, 2021, v. 19, n. 5, p. 860, doi. 10.1111/pbi.13551

By:

Torkamaneh, Davoud;
Laroche, Jérôme;
Boyle, Brian;
Hyten, David L.;
Belzile, François

Publication type:

Article

Development and Evaluation of SoySNP50K, a High- Density Genotyping Array for Soybean.

Published in:

PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0054985

By:

Qijian Song;
Hyten, David L.;
Gaofeng Jia;
Quigley, Charles V.;
Fickus, Edward W.;
Nelson, Randall L.;
Cregan, Perry B.

Publication type:

Article

Quantitative trait locus analysis of unsaturated fatty acids in a recombinant inbred population of soybean.

Published in:

Molecular Breeding, 2014, v. 33, n. 2, p. 281, doi. 10.1007/s11032-013-9948-3

By:

Wang, Xianzhi;
Jiang, Guo-Liang;
Green, Marci;
Scott, Roy;
Hyten, David;
Cregan, Perry

Publication type:

Article

Quantitative trait locus analysis of saturated fatty acids in a population of recombinant inbred lines of soybean.

Published in:

Molecular Breeding, 2012, v. 30, n. 2, p. 1163, doi. 10.1007/s11032-012-9704-0

By:

Wang, Xianzhi;
Jiang, Guo-Liang;
Green, Marci;
Scott, Roy;
Hyten, David;
Cregan, Perry

Publication type:

Article

Genome sequence of the palaeopolyploid soybean.

Published in:

2010

By:

Schmutz, Jeremy;
Cannon, Steven B.;
Schlueter, Jessica;
Ma, Jianxin;
Mitros, Therese;
Nelson, William;
Hyten, David L.;
Song, Qijian;
Thelen, Jay J.;
Cheng, Jianlin;
Xu, Dong;
Hellsten, Uffe;
May, Gregory D.;
Yu, Yeisoo;
Sakurai, Tetsuya;
Umezawa, Taishi;
Bhattacharyya, Madan K.;
Sandhu, Devinder;
Valliyodan, Babu;
Lindquist, Erika

Publication type:

Correction Notice

Genome sequence of the palaeopolyploid soybean.

Published in:

Nature, 2010, v. 463, n. 7278, p. 178, doi. 10.1038/nature08670

By:

Schmutz, Jeremy;
Cannon, Steven B.;
Schlueter, Jessica;
Jianxin Ma;
Mitros, Therese;
Nelson, William;
Hyten, David L.;
Qijian Song;
Thelen, Jay J.;
Jianlin Cheng;
Dong Xu;
Hellsten, Uffe;
May, Gregory D.;
Yu, Yeisoo;
Sakurai, Tetsuya;
Umezawa, Taishi;
Bhattacharyya, Madan K.;
Sandhu, Devinder;
Valliyodan, Babu;
Lindquist, Erika

Publication type:

Article

A Soybean Transcript Map: Gene Distribution, Haplotype and Single-Nucleotide Polymorphism Analysis.

Published in:

Genetics, 2007, v. 176, n. 1, p. 685, doi. 10.1534/genetics.107.070821

By:

Ik-Young Choi;
Hyten, David L.;
Matukumalli, Lakshmi K.;
Qijian Song;
Chaky, Julian M.;
Quigley, Charles V.;
Chase, Kevin;
Lark, K. Gordon;
Reiter, Robert S.;
Mun-Sup Yoon;
Eun-Young Hwang;
Seung-In Yi;
Young, Nevin D.;
Shoemaker, Randy C.;
van Tassell, Curtis P.;
Specht, James E.;
Cregan, Perry B.

Publication type:

Article

Highly Variable Patterns of Linkage Disequilibrium in Multiple Soybean Populations.

Published in:

Genetics, 2007, v. 175, n. 4, p. 1937, doi. 10.1534/genetics.106.069740

By:

Hyten, David L.;
IK-Young Choi;
Qijian Song;
Shoemaker, Randy C.;
Nelson, Randall L.;
Costa, Jose M.;
Specht, James E.;
Cregan, Perry B.

Publication type:

Article

Context-Specific Genomic Selection Strategies Outperform Phenotypic Selection for Soybean Quantitative Traits in the Progeny Row Stage.

Published in:

Crop Science, 2019, v. 59, n. 1, p. 54, doi. 10.2135/cropsci2018.03.0197

By:

Smallwood, Christopher J.;
Bhandari, Hem S.;
Pantalone, Vincent R.;
Saxton, Arnold M.;
Gillman, Jason D.;
Wadl, Phillip A.;
Fallen, Benjamin D.;
Hyten, David L.;
Song, Qijian

Publication type:

Article

Detection and Confirmation of Quantitative Trait Loci for Soybean Seed Isoflavones.

Published in:

Crop Science, 2014, v. 54, n. 2, p. 595, doi. 10.2135/cropsci2013.05.0340

By:

Smallwood, Christopher J.;
Nyinyi, Catherine N.;
Kopsell, Dean A.;
Sams, Carl E.;
West, Dennis R.;
Pengyin Chen;
Kantartzi, Stella K.;
Cregan, Perry B.;
Hyten, David L.;
Pantalone, Vincent R.

Publication type:

Article

Phytophthora Root Rot Resistance in Soybean E00003.

Published in:

Crop Science, 2014, v. 54, n. 2, p. 492, doi. 10.2135/cropsci2012.11.0631

By:

Zhongnan Zhang;
Jianjun Hao;
Jiazheng Yuan;
Qijian Song;
Hyten, David L.;
Cregan, Perry B.;
Guorong Zhang;
Cuihua Gu;
Ming Li;
Dechun Wang

Publication type:

Article

Genetic Mapping and Confirmation of Quantitative Trait Loci for Seed Protein and Oil Contents and Seed Weight in Soybean.

Published in:

Crop Science, 2013, v. 53, n. 3, p. 765, doi. 10.2135/cropsci2012.03.0153

By:

Pathan, Safiullah M.;
Vuong, Tri;
Clark, Kerry;
Jeong-Dong Lee;
Shannon, J. Grover;
Roberts, Craig A.;
Ellersieck, Mark R.;
Burton, Joseph W.;
Cregan, Perry B.;
Hyten, David L.;
Nguyen, Henry T.;
Sleper, David A.

Publication type:

Article

Stacking Resistance Alleles from Wild and Domestic Soybean Sources Improves Soybean Cyst Nematode Resistance.

Published in:

Crop Science, 2011, v. 51, n. 3, p. 934, doi. 10.2135/cropsci2010.08.0459

By:

Myungsik Kim;
Hyten, David L.;
Niblack, Terry L.;
Diers, Brian W.

Publication type:

Article

Abundance of SSR Motifs and Development of Candidate Polymorphic SSR Markers (BARCSOYSSṞ1.0) in Soybean.

Published in:

Crop Science, 2010, v. 50, n. 5, p. 1950, doi. 10.2135/cropsci2009.10.0607

By:

Qijian Song;
Gaofeng Jia;
Youlin Zhu;
David Grant;
Nelson, Rex T.;
Eun-Young Hwang;
Hyten, David L.;
Cregan, Perry B.

Publication type:

Article

A High Density Integrated Genetic Linkage Map of Soybean and the Development of a 1536 Universal Soy Linkage Panel for Quantitative Trait Locus Mapping.

Published in:

Crop Science, 2010, v. 50, n. 3, p. 960, doi. 10.2135/cropsci2009.06.0360

By:

Hyten, David L.;
Ik-Young Choi;
Qijian Song;
Specht, James E.;
Carter, Jr., Thomas E.;
Shoemaker, Randy C.;
Eun-Young Hwang;
Matukumalli, Lakshmi K.;
Cregan, Perry B.

Publication type:

Article

Mapping and Confirmation of a New Allele at Rpp1 from Soybean PI 594538A Conferring RB Lesion—Type Resistance to Soybean Rust.

Published in:

Crop Science, 2009, v. 49, n. 3, p. 783, doi. 10.2135/cropsci2008.06.0335

By:

Chakraborty, Nanda;
Curley, Joe;
Frederick, Reid D.;
Hyten, David L.;
Nelson, Randall L.;
Hartman, Glen L.;
Diers, Brian W.

Publication type:

Article

Bulked Segregant Analysis Using the GoldenGate Assay to Locate the Rpp3 Locus that Confers Resistance to Soybean Rust in Soybean.

Published in:

Crop Science, 2009, v. 49, n. 1, p. 265, doi. 10.2135/cropsci2008.08.0511

By:

Hyten, David L.;
Smith, James R.;
Frederick, Reid D.;
Tucker, Mark L.;
Qijian Song;
Cregan, Perry B.

Publication type:

Article

Seed Protein and Oil QTL in a Prominent Glycine max Genetic Pedigree: Enhancing Stability for Marker Assisted Selection.

Published in:

Agronomy, 2023, v. 13, n. 2, p. 567, doi. 10.3390/agronomy13020567

By:

Fields, Jeneen;
Saxton, Arnold M.;
Beyl, Caula A.;
Kopsell, Dean A.;
Cregan, Perry B.;
Hyten, David L.;
Cuvaca, Ivan;
Pantalone, Vincent R.

Publication type:

Article

High-throughput SNP discovery and assay development in common bean.

Published in:

BMC Genomics, 2010, v. 11, p. 475, doi. 10.1186/1471-2164-11-475

By:

Hyten, David L.;
Qijian Song;
Fickus, Edward W.;
Quigley, Charles V.;
Jong-Sung Lim;
Ik-Young Choi;
Eun-Young Hwang;
Pastor-Corrales, Marcial;
Cregan, Perry B.

Publication type:

Article

High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence.

Published in:

BMC Genomics, 2010, v. 11, p. 1, doi. 10.1186/1471-2164-11-38

By:

Hyten, David L;
Cannon, Steven B;
Qijian Song;
Weeks, Nathan;
Fickus, Edward W;
Shoemaker, Randy C;
Specht, James E;
Farmer, Andrew D;
May, Gregory D;
Cregan, Perry B

Publication type:

Article