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A Mitochondrial Ancestry of the Hydrogenosomes of Nyctotherus ovalis.
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- Molecular Biology & Evolution, 2000, v. 17, n. 1, p. 202, doi. 10.1093/oxfordjournals.molbev.a026234
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- Article
Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotes.
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- Bioinformatics, 2005, v. 21, p. ii144, doi. 10.1093/bioinformatics/bti1124
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The properties of protein family space depend on experimental design.
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- Bioinformatics, 2005, v. 21, n. 11, p. 2618, doi. 10.1093/bioinformatics/bti386
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Prokaryotic diversity of the Saccharomyces cerevisiae Atx1p-mediated copper pathway.
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- Bioinformatics, 2004, v. 20, n. 16, p. 2644, doi. 10.1093/bioinformatics/bth298
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- Article
BCG-induced trained immunity enhances acellular pertussis vaccination responses in an explorative randomized clinical trial.
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- NPJ Vaccines, 2022, v. 7, n. 1, p. 1, doi. 10.1038/s41541-022-00438-4
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- Article
Monoclonal antibodies block transmission of genetically diverse Plasmodium falciparum strains to mosquitoes.
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- NPJ Vaccines, 2021, v. 6, n. 1, p. 1, doi. 10.1038/s41541-021-00366-9
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- Article
Parallel evolution and enhanced virulence upon in vivo passage of an RNA virus in Drosophila melanogaster.
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- Virus Evolution, 2023, v. 9, n. 2, p. 1, doi. 10.1093/ve/vead074
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Haemophilus is overrepresented in the nasopharynx of infants hospitalized with RSV infection and associated with increased viral load and enhanced mucosal CXCL8 responses.
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- Microbiome, 2018, v. 6, p. 1, doi. 10.1186/s40168-017-0395-y
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Prior exposure to B. pertussis shapes the mucosal antibody response to acellular pertussis booster vaccination.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-35165-w
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- Article
Iterative orthology prediction uncovers new mitochondrial proteins and identifies C12orf62 as the human ortholog of COX14, a protein involved in the assembly of cytochrome c oxidase.
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- Genome Biology, 2012, v. 13, n. 2, p. 1, doi. 10.1186/gb-2012-13-2-r12
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- Article
NDUFB7 and NDUFA8 are located at the intermembrane surface of complex I
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- FEBS Letters, 2011, v. 585, n. 5, p. 737, doi. 10.1016/j.febslet.2011.01.046
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- Article
The alpha-kinase family: an exceptional branch on the protein kinase tree.
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- Cellular & Molecular Life Sciences, 2010, v. 67, n. 6, p. 875, doi. 10.1007/s00018-009-0215-z
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- Article
Primary Exposure to SARS-CoV-2 via Infection or Vaccination Determines Mucosal Antibody-Dependent ACE2 Binding Inhibition.
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- Journal of Infectious Diseases, 2024, v. 229, n. 1, p. 137, doi. 10.1093/infdis/jiad385
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- Article
Isocitrate dehydrogenase 1-mutated human gliomas depend on lactate and glutamate to alleviate metabolic stress.
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- FASEB Journal, 2019, v. 33, n. 1, p. 557, doi. 10.1096/fj.201800907RR
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A three-dimensional topology of complex I inferred from evolutionary correlations.
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- BMC Structural Biology, 2012, v. 12, n. 1, p. 19, doi. 10.1186/1472-6807-12-19
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- Article
Temporal composition of the cervicovaginal microbiome associates with hrHPV infection outcomes in a longitudinal study.
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- BMC Infectious Diseases, 2024, v. 24, n. 1, p. 1, doi. 10.1186/s12879-024-09455-1
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- Article
Transcriptome analysis of complex I-deficient patients reveals distinct expression programs for subunits and assembly factors of the oxidative phosphorylation system.
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- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1883-8
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- Article
MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters.
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- BMC Genomics, 2011, v. 12, p. 1, doi. 10.1186/1471-2164-12-330
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- Article
MicroRNA genes preferentially expressed in dendritic cells contain sites for conserved transcription factor binding motifs in their promoters.
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- BMC Genomics, 2011, v. 12, n. 1, p. 330, doi. 10.1186/1471-2164-12-330
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- Article
Comparative Clustering (CompaCt) of eukaryote complexomes identifies novel interactions and sheds light on protein complex evolution.
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- PLoS Computational Biology, 2023, v. 19, n. 8, p. 1, doi. 10.1371/journal.pcbi.1011090
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Evolution and Diversification of the Organellar Release Factor Family.
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- Molecular Biology & Evolution, 2012, v. 29, n. 11, p. 3497, doi. 10.1093/molbev/mss157
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- Article
The Organellar Genome and Metabolic Potential of the Hydrogen-Producing Mitochondrion of Nyctotherus ovalis.
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- Molecular Biology & Evolution, 2011, v. 28, n. 8, p. 2379, doi. 10.1093/molbev/msr059
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Evolution of Closely Linked Gene Pairs in Vertebrate Genomes.
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- Molecular Biology & Evolution, 2008, v. 25, n. 9, p. 1909, doi. 10.1093/molbev/msn136
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Signature Genes as a Phylogenomic Tool.
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- Molecular Biology & Evolution, 2008, v. 25, n. 8, p. 1659, doi. 10.1093/molbev/msn115
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Interspecies differences in PTH-mediated PKA phosphorylation of the epithelial calcium channel TRPV5.
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- Pflügers Archiv: European Journal of Physiology, 2017, v. 469, n. 10, p. 1301, doi. 10.1007/s00424-017-1996-9
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Identification of Nipsnap1 as a novel auxiliary protein inhibiting TRPV6 activity.
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- Pflügers Archiv: European Journal of Physiology, 2008, v. 457, n. 1, p. 91, doi. 10.1007/s00424-008-0494-5
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An anaerobic mitochondrion that produces hydrogen.
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- Nature, 2005, v. 434, n. 7029, p. 74, doi. 10.1038/nature03343
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- Article
Uncovering Distinct Primary Vaccination-Dependent Profiles in Human Bordetella pertussis Specific CD4+ T-Cell Responses Using a Novel Whole Blood Assay.
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- Vaccines, 2020, v. 8, n. 2, p. 225, doi. 10.3390/vaccines8020225
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- Article
A mutation in the human CBP4 ortholog UQCC3 impairs complex III assembly, activity and cytochrome b stability.
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- Human Molecular Genetics, 2014, v. 23, n. 23, p. 6356, doi. 10.1093/hmg/ddu357
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CEP89 is required for mitochondrial metabolism and neuronal function in man and fly.
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- Human Molecular Genetics, 2013, v. 22, n. 15, p. 3138, doi. 10.1093/hmg/ddt170
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A mutation in the FAM36A gene, the human ortholog of COX20, impairs cytochrome c oxidase assembly and is associated with ataxia and muscle hypotonia.
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- Human Molecular Genetics, 2013, v. 22, n. 4, p. 656, doi. 10.1093/hmg/dds473
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Genome evolution predicts genetic interactions in protein complexes and reveals cancer drug targets.
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- Nature Communications, 2013, v. 4, n. 7, p. 2124, doi. 10.1038/ncomms3124
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The mitochondrial genomes of the ciliates Euplotes minuta and Euplotes crassus.
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- BMC Genomics, 2009, v. 10, p. 514, doi. 10.1186/1471-2164-10-514
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Horizontal gene transfer from Bacteria to rumen Ciliates indicates adaptation to their anaerobic, carbohydrates-rich environment.
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- BMC Genomics, 2006, v. 7, p. 22, doi. 10.1186/1471-2164-7-22
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A global definition of expression context is conserved between orthologs, but does not correlate with sequence conservation.
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- BMC Genomics, 2006, v. 7, p. 10, doi. 10.1186/1471-2164-7-10
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Sequence specificity between interacting and non-interacting homologs identifies interface residues - a homodimer and monomer use case.
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- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0758-y
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- Article
Mapping actionable pathways and mutations in brain tumours using targeted RNA next generation sequencing.
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- Acta Neuropathologica Communications, 2019, v. 7, n. 1, p. N.PAG, doi. 10.1186/s40478-019-0826-z
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The assembly pathway of complex I in Arabidopsis thaliana.
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- Plant Journal, 2019, v. 97, n. 3, p. 447, doi. 10.1111/tpj.14133
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Evolution of the Tim17 protein family.
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- Biology Direct, 2016, v. 11, p. 1, doi. 10.1186/s13062-016-0157-y
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- Article
CTCF-mediated chromatin loops enclose inducible gene regulatory domains.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2516-6
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- Article
Mutations in the UQCC1-Interacting Protein, UQCC2, Cause Human Complex III Deficiency Associated with Perturbed Cytochrome <i>b</i> Protein Expression.
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- PLoS Genetics, 2013, v. 9, n. 12, p. 1, doi. 10.1371/journal.pgen.1004034
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Human Intellectual Disability Genes Form Conserved Functional Modules in <i>Drosophila</i>.
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- PLoS Genetics, 2013, v. 9, n. 10, p. 1, doi. 10.1371/journal.pgen.1003911
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Clustering of Codons with Rare Cognate tRNAs in Human Genes Suggests an Extra Level of Expression Regulation.
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- PLoS Genetics, 2009, v. 5, n. 7, p. 1, doi. 10.1371/journal.pgen.1000548
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Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication.
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- Briefings in Bioinformatics, 2011, v. 12, n. 5, p. 442, doi. 10.1093/bib/bbr022
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Conserved co-expression for candidate disease gene prioritization.
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- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-208
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Optimising oligonucleotide array design for ChIP-on-chip.
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- BMC Bioinformatics, 2007, v. 8, p. 1, doi. 10.1186/1471-2105-8-S8-P4
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Orthology prediction at scalable resolution by phylogenetic tree analysis.
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- BMC Bioinformatics, 2007, v. 8, p. 83, doi. 10.1186/1471-2105-8-83
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Integrative Genomics-Based Discovery of Novel Regulators of the Innate Antiviral Response.
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- PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004553
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Inferring Metabolic States in Uncharacterized Environments Using Gene-Expression Measurements.
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- PLoS Computational Biology, 2013, v. 9, n. 3, p. 1, doi. 10.1371/journal.pcbi.1002988
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From Endosymbiont to Host-Controlled Organelle: The Hijacking of Mitochondrial Protein Synthesis and Metabolism.
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- PLoS Computational Biology, 2007, v. 3, n. 11, p. e219, doi. 10.1371/journal.pcbi.0030219
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- Article