Works matching AU Husmeier, Dirk
Results: 55
Non-homogeneous dynamic Bayesian networks with Bayesian regularization for inferring gene regulatory networks with gradually time-varying structure.
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- Machine Learning, 2013, v. 90, n. 2, p. 191, doi. 10.1007/s10994-012-5311-x
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- Publication type:
- Article
Regularization of non-homogeneous dynamic Bayesian networks with global information-coupling based on hierarchical Bayesian models.
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- Machine Learning, 2013, v. 91, n. 1, p. 105, doi. 10.1007/s10994-012-5326-3
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- Publication type:
- Article
Non-homogeneous dynamic Bayesian networks for continuous data.
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- Machine Learning, 2011, v. 83, n. 3, p. 355, doi. 10.1007/s10994-010-5230-7
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- Article
Improving the structure MCMC sampler for Bayesian networks by introducing a new edge reversal move.
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- Machine Learning, 2008, v. 71, n. 2-3, p. 265, doi. 10.1007/s10994-008-5057-7
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- Article
Segregation and Recombination of a Multipartite Mitochondrial DNA in Populations of the Potato Cyst Nematode Globodera pallida.
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- Journal of Molecular Evolution, 2007, v. 64, n. 6, p. 689, doi. 10.1007/s00239-007-0023-8
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- Publication type:
- Article
GENE REGULATORY NETWORK RECONSTRUCTION BY BAYESIAN INTEGRATION OF PRIOR KNOWLEDGE AND/OR DIFFERENT EXPERIMENTAL CONDITIONS.
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- Journal of Bioinformatics & Computational Biology, 2008, v. 6, n. 3, p. 543, doi. 10.1142/S0219720008003539
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- Article
MCMC methods for inference in a mathematical model of pulmonary circulation.
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- Statistica Neerlandica, 2018, v. 72, n. 3, p. 306, doi. 10.1111/stan.12132
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- Article
Statistical modelling of cell movement.
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- Statistica Neerlandica, 2018, v. 72, n. 3, p. 265, doi. 10.1111/stan.12140
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- Article
Analysis of Cardiac Amyloidosis Progression Using Model-Based Markers.
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- Frontiers in Physiology, 2020, v. 11, p. 1, doi. 10.3389/fphys.2020.00324
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- Article
Inferring bi-directional interactions between circadian clock genes and metabolism with model ensembles.
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- Statistical Applications in Genetics & Molecular Biology, 2015, v. 14, n. 2, p. 143, doi. 10.1515/sagmb-2014-0041
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- Publication type:
- Article
Statistical inference of regulatory networks for circadian regulation.
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- Statistical Applications in Genetics & Molecular Biology, 2014, v. 13, n. 3, p. 227, doi. 10.1515/sagmb-2013-0051
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- Publication type:
- Article
A Non-Homogeneous Dynamic Bayesian Network with Sequentially Coupled Interaction Parameters for Applications in Systems and Synthetic Biology.
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- Statistical Applications in Genetics & Molecular Biology, 2012, v. 11, n. 4, p. -1, doi. 10.1515/1544-6115.1761
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- Article
Addressing the Shortcomings of Three Recent Bayesian Methods for Detecting Interspecific Recombination in DNA Sequence Alignments.
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- Statistical Applications in Genetics & Molecular Biology, 2008, v. 7, n. 1, p. 1, doi. 10.2202/1544-6115.1399
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- Publication type:
- Article
Reconstructing Gene Regulatory Networks with Bayesian Networks by Combining Expression Data with Multiple Sources of Prior Knowledge.
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- Statistical Applications in Genetics & Molecular Biology, 2007, v. 6, n. 1, p. 1, doi. 10.2202/1544-6115.1282
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- Article
A Heuristic Bayesian Method for Segmenting DNA Sequence Alignments and Detecting Evidence for Recombination and Gene Conversion.
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- Statistical Applications in Genetics & Molecular Biology, 2006, v. 5, n. 1, p. 1, doi. 10.2202/1544-6115.1238
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- Publication type:
- Article
ShinyKGode: an interactive application for ODE parameter inference using gradient matching.
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- Bioinformatics, 2018, v. 34, n. 13, p. 2314, doi. 10.1093/bioinformatics/bty089
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- Publication type:
- Article
Improvements in the reconstruction of time-varying gene regulatory networks: dynamic programming and regularization by information sharing among genes.
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- Bioinformatics, 2011, v. 27, n. 5, p. 693, doi. 10.1093/bioinformatics/btq711
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- Publication type:
- Article
TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops.
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- Bioinformatics, 2009, v. 25, n. 1, p. 126, doi. 10.1093/bioinformatics/btn575
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- Publication type:
- Article
Modelling non-stationary gene regulatory processes with a non-homogeneous Bayesian network and the allocation sampler.
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- Bioinformatics, 2008, v. 24, n. 18, p. 2071, doi. 10.1093/bioinformatics/btn367
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- Publication type:
- Article
Comparative evaluation of reverse engineering gene regulatory networks with relevance networks, graphical gaussian models and bayesian networks.
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- Bioinformatics, 2006, v. 22, n. 20, p. 2523, doi. 10.1093/bioinformatics/btl391
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- Article
A regularized discriminative model for the prediction of protein–peptide interactions.
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- Bioinformatics, 2006, v. 22, n. 5, p. 532, doi. 10.1093/bioinformatics/bti804
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- Article
Discriminating between rate heterogeneity and interspecific recombination in DNA sequence alignments with phylogenetic factorial hidden Markov models.
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- Bioinformatics, 2005, v. 21, p. ii166, doi. 10.1093/bioinformatics/bti1127
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- Article
Detecting interspecific recombination with a pruned probabilistic divergence measure.
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- Bioinformatics, 2005, v. 21, n. 9, p. 1797, doi. 10.1093/bioinformatics/bti151
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- Publication type:
- Article
TOPALi: software for automatic identification of recombinant sequences within DNA multiple alignments.
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- Bioinformatics, 2004, v. 20, n. 11, p. 1806, doi. 10.1093/bioinformatics/bth155
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- Article
Sensitivity and specificity of inferring genetic regulatory interactions from microarray experiments with dynamic Bayesian networks.
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- Bioinformatics, 2003, v. 19, n. 17, p. 2271, doi. 10.1093/bioinformatics/btg313
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- Publication type:
- Article
Detecting recombination with MCMC.
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- Bioinformatics, 2002, v. 18, p. S345, doi. 10.1093/bioinformatics/18.suppl_1.S345
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- Publication type:
- Article
A Bayesian approach to discriminate between alternative DNA sequence segmentations.
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- Bioinformatics, 2002, v. 18, n. 2, p. 226, doi. 10.1093/bioinformatics/18.2.226
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- Publication type:
- Article
Probabilistic divergence measures for detecting interspecies recombination.
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- Bioinformatics, 2001, v. 17, p. 123, doi. 10.1093/bioinformatics/17.suppl_1.s123
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- Publication type:
- Article
Computational framework for the generation of one‐dimensional vascular models accounting for uncertainty in networks extracted from medical images.
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- Journal of Physiology, 2024, v. 602, n. 16, p. 3929, doi. 10.1113/JP286193
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- Article
Bayesian optimisation for efficient parameter inference in a cardiac mechanics model of the left ventricle.
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- International Journal for Numerical Methods in Biomedical Engineering, 2022, v. 38, n. 5, p. 1, doi. 10.1002/cnm.3593
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- Article
Markov chain Monte Carlo with Gaussian processes for fast parameter estimation and uncertainty quantification in a 1D fluid‐dynamics model of the pulmonary circulation.
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- International Journal for Numerical Methods in Biomedical Engineering, 2021, v. 37, n. 2, p. 1, doi. 10.1002/cnm.3421
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- Article
Predicting ecological regime shift under climate change: New modelling techniques and potential of molecular-based approaches.
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- Current Zoology, 2013, v. 59, n. 3, p. 403, doi. 10.1093/czoolo/59.3.403
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- Article
Detecting Recombination in 4-Taxa DNA Sequence Alignments with Bayesian Hidden Markov Models and Markov Chain Monte Carlo.
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- Molecular Biology & Evolution, 2003, v. 20, n. 3, p. 315, doi. 10.1093/molbev/msg039
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- Article
Inferring spatially varying animal movement characteristics using a hierarchical continuous‐time velocity model.
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- Ecology Letters, 2022, v. 25, n. 12, p. 2726, doi. 10.1111/ele.14117
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- Publication type:
- Article
Classification of myocardial blood flow based on dynamic contrast‐enhanced magnetic resonance imaging using hierarchical Bayesian models.
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- Journal of the Royal Statistical Society: Series C (Applied Statistics), 2022, v. 71, n. 5, p. 1085, doi. 10.1111/rssc.12568
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- Publication type:
- Article
Improving cardio‐mechanic inference by combining in vivo strain data with ex vivo volume–pressure data.
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- Journal of the Royal Statistical Society: Series C (Applied Statistics), 2022, v. 71, n. 4, p. 906, doi. 10.1111/rssc.12560
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- Article
Fast parameter inference in a biomechanical model of the left ventricle by using statistical emulation.
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- Journal of the Royal Statistical Society: Series C (Applied Statistics), 2019, v. 68, n. 5, p. 1555, doi. 10.1111/rssc.12374
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- Article
Improving the identification of antigenic sites in the H1N1 influenza virus through accounting for the experimental structure in a sparse hierarchical Bayesian model.
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- Journal of the Royal Statistical Society: Series C (Applied Statistics), 2019, v. 68, n. 4, p. 859, doi. 10.1111/rssc.12338
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- Article
Statistical inference of the mechanisms driving collective cell movement.
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- Journal of the Royal Statistical Society: Series C (Applied Statistics), 2017, v. 66, n. 4, p. 869, doi. 10.1111/rssc.12203
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- Publication type:
- Article
Segmenting bacterial and viral DNA sequence alignments with a trans-dimensional phylogenetic factorial hidden Markov model.
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- Journal of the Royal Statistical Society: Series C (Applied Statistics), 2009, v. 58, n. 3, p. 307, doi. 10.1111/j.1467-9876.2008.00648.x
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- Publication type:
- Article
Boundary constrained Gaussian processes for robust physics-informed machine learning of linear partial differential equations.
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- Journal of Machine Learning Research, 2024, v. 25, p. 1
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- Article
Modelling Nonstationary Gene Regulatory Processes.
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- Advances in Bioinformatics, 2010, p. 1, doi. 10.1155/2010/749848
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- Article
A Bayesian approach for parameter estimation in the extended clock gene circuit of Arabidopsis thaliana.
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- BMC Bioinformatics, 2013, v. 14, n. Suppl 10, p. 1, doi. 10.1186/1471-2105-14-S10-S3
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- Publication type:
- Article
System Relaxation and Thermodynamic Integration.
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- Molecular Simulation, 1992, v. 8, n. 3-5, p. 285, doi. 10.1080/08927029208022483
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- Publication type:
- Article
Sensitivity analysis and inverse uncertainty quantification for the left ventricular passive mechanics.
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- Biomechanics & Modeling in Mechanobiology, 2022, v. 21, n. 3, p. 953, doi. 10.1007/s10237-022-01571-8
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- Publication type:
- Article
Hemodynamic assessment of pulmonary hypertension in mice: a model-based analysis of the disease mechanism.
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- Biomechanics & Modeling in Mechanobiology, 2019, v. 18, n. 1, p. 219, doi. 10.1007/s10237-018-1078-8
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- Publication type:
- Article
Dynamic Bayesian networks in molecular plant science: inferring gene regulatory networks from multiple gene expression time series.
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- Euphytica, 2012, v. 183, n. 3, p. 361, doi. 10.1007/s10681-011-0538-3
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- Article
A hierarchical machine learning framework for the analysis of large scale animal movement data.
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- Movement Ecology, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40462-021-00242-0
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- Article
Approximate parameter inference in systems biology using gradient matching: a comparative evaluation.
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- 2016
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- Publication type:
- journal article
A Bayesian approach to incorporate structural data into the mapping of genotype to antigenic phenotype of influenza A(H3N2) viruses.
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- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010885
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- Article