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Genes for highly abundant proteins in Escherichia coli avoid 5' codons that promote ribosomal initiation.
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- PLoS Computational Biology, 2023, v. 19, n. 10, p. 1, doi. 10.1371/journal.pcbi.1011581
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- Article
A new human embryonic cell type associated with activity of young transposable elements allows definition of the inner cell mass.
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- PLoS Biology, 2023, v. 21, n. 6, p. 1, doi. 10.1371/journal.pbio.3002162
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- Article
Both trust in, and polarization of trust in, relevant sciences have increased through the COVID-19 pandemic.
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- PLoS ONE, 2023, v. 17, n. 3, p. 1, doi. 10.1371/journal.pone.0278169
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- Article
People with more extreme attitudes towards science have self-confidence in their understanding of science, even if this is not justified.
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- PLoS Biology, 2023, v. 21, n. 1, p. 1, doi. 10.1371/journal.pbio.3001915
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- Article
Novel Gene Controls a New Structure: PiggyBac Transposable Element-Derived 1, Unique to Mammals, Controls Mammal-Specific Neuronal Paraspeckles.
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- Molecular Biology & Evolution, 2022, v. 39, n. 10, p. 1, doi. 10.1093/molbev/msac175
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- Article
Stop Codon Usage as a Window into Genome Evolution: Mutation, Selection, Biased Gene Conversion and the TAG Paradox.
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- Genome Biology & Evolution, 2022, v. 14, n. 8, p. 1, doi. 10.1093/gbe/evac115
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- Article
Selfish centromeres and the wastefulness of human reproduction.
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- PLoS Biology, 2022, v. 20, n. 7, p. 1, doi. 10.1371/journal.pbio.3001671
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- Article
Transgene-design: a web application for the design of mammalian transgenes.
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- Bioinformatics, 2022, v. 38, n. 9, p. 2626, doi. 10.1093/bioinformatics/btac139
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- Article
In rice splice variants that restore the reading frame after frameshifting indel introduction are common, often induced by the indels and sometimes lead to organism-level rescue.
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- PLoS Genetics, 2022, v. 18, n. 2, p. 1, doi. 10.1371/journal.pgen.1010071
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- Article
Evidence from Drosophila Supports Higher Duplicability of Faster Evolving Genes.
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- Genome Biology & Evolution, 2022, v. 14, n. 1, p. 1, doi. 10.1093/gbe/evac003
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- Article
Variation in Release Factor Abundance Is Not Needed to Explain Trends in Bacterial Stop Codon Usage.
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- Molecular Biology & Evolution, 2022, v. 39, n. 1, p. 1, doi. 10.1093/molbev/msab326
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- Article
Corrigendum to: Evidence for Strong Mutation Bias toward, and Selection against, U Content in SARS-CoV-2: Implications for Vaccine Design.
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- 2021
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- Correction Notice
Causes and Consequences of Purifying Selection on SARS-CoV-2.
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- Genome Biology & Evolution, 2021, v. 13, n. 10, p. 1, doi. 10.1093/gbe/evab196
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- Article
Evidence in disease and non-disease contexts that nonsense mutations cause altered splicing via motif disruption.
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- Nucleic Acids Research, 2021, v. 49, n. 17, p. 9665, doi. 10.1093/nar/gkab750
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- Article
Transcription, mRNA Export, and Immune Evasion Shape the Codon Usage of Viruses.
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- Genome Biology & Evolution, 2021, v. 13, n. 9, p. 1, doi. 10.1093/gbe/evab106
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- Article
Inferring Adaptive Codon Preference to Understand Sources of Selection Shaping Codon Usage Bias.
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- Molecular Biology & Evolution, 2021, v. 38, n. 8, p. 3247, doi. 10.1093/molbev/msab099
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- Article
Mitotic gene conversion can be as important as meiotic conversion in driving genetic variability in plants and other species without early germline segregation.
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- PLoS Biology, 2021, v. 19, n. 3, p. 1, doi. 10.1371/journal.pbio.3001164
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- Article
Evidence for Strong Mutation Bias toward, and Selection against, U Content in SARS-CoV-2: Implications for Vaccine Design.
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- Molecular Biology & Evolution, 2021, v. 38, n. 1, p. 67, doi. 10.1093/molbev/msaa188
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- Article
Effective Population Size Predicts Local Rates but Not Local Mitigation of Read-through Errors.
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- Molecular Biology & Evolution, 2021, v. 38, n. 1, p. 244, doi. 10.1093/molbev/msaa210
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- Article
A RCT for assessment of active human-centred learning finds teacher-centric non-human teaching of evolution optimal.
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- NPJ Science of Learning, 2020, v. 5, n. 1, p. 1, doi. 10.1038/s41539-020-00078-0
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- Article
Repeat-induced point mutation in Neurospora crassa causes the highest known mutation rate and mutational burden of any cellular life.
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- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02060-w
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- Article
A Depletion of Stop Codons in lincRNA is Owing to Transfer of Selective Constraint from Coding Sequences.
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- Molecular Biology & Evolution, 2020, v. 37, n. 4, p. 1148, doi. 10.1093/molbev/msz299
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- Article
In eubacteria, unlike eukaryotes, there is no evidence for selection favouring fail-safe 3’ additional stop codons.
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- PLoS Genetics, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pgen.1008386
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- Article
Author Correction: Isolation and cultivation of naive-like human pluripotent stem cells based on HERVH expression.
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- 2019
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- Correction Notice
Conditional expression explains molecular evolution of social genes in a microbe.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11237-2
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- Article
The architecture of intra-organism mutation rate variation in plants.
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- PLoS Biology, 2019, v. 17, n. 4, p. 1, doi. 10.1371/journal.pbio.3000191
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- Article
Epistasis analysis uncovers hidden antibiotic resistance-associated fitness costs hampering the evolution of MRSA.
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- Genome Biology, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s13059-018-1469-2
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- Article
Refining the Ambush Hypothesis: Evidence That GC- and ATRich Bacteria Employ Different Frameshift Defence Strategies.
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- Genome Biology & Evolution, 2018, v. 10, n. 4, p. 1153, doi. 10.1093/gbe/evy075
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- Article
Faster Evolving Primate Genes Are More Likely to Duplicate.
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- Molecular Biology & Evolution, 2018, v. 35, n. 1, p. 107, doi. 10.1093/molbev/msx270
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- Article
Adenine Enrichment at the Fourth CDS Residue in Bacterial Genes Is Consistent with Error Proofing for +1 Frameshifts.
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- Molecular Biology & Evolution, 2017, v. 34, n. 12, p. 3064, doi. 10.1093/molbev/msx223
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- Article
Depletion of somatic mutations in splicing-associated sequences in cancer genomes.
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- Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1337-5
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- Article
Male Mutation Bias Is the Main Force Shaping Chromosomal Substitution Rates in Monotreme Mammals.
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- Genome Biology & Evolution, 2017, v. 9, n. 9, p. 2198, doi. 10.1093/gbe/evx155
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- Article
It's easier to get along with the quiet neighbours.
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- Molecular Systems Biology, 2017, v. 13, n. 9, p. n/a, doi. 10.15252/msb.20177961
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- Article
Teaching genetics prior to teaching evolution improves evolution understanding but not acceptance.
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- PLoS Biology, 2017, v. 15, n. 5, p. 1, doi. 10.1371/journal.pbio.2002255
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- Article
Comparative Analyses of Selection Operating on Nontranslated Intergenic Regions of Diverse Bacterial Species.
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- Genetics, 2017, v. 206, n. 1, p. 363, doi. 10.1534/genetics.116.195784
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- Article
Both Maintenance and Avoidance of RNA-Binding Protein Interactions Constrain Coding Sequence Evolution.
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- Molecular Biology & Evolution, 2017, v. 34, n. 5, p. 1110, doi. 10.1093/molbev/msx061
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- Article
SDHA related tumorigenesis: a new case series and literature review for variant interpretation and pathogenicity.
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- Molecular Genetics & Genomic Medicine, 2017, v. 5, n. 3, p. 237, doi. 10.1002/mgg3.279
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- Article
Direct Determination of the Mutation Rate in the Bumblebee Reveals Evidence for Weak Recombination-Associated Mutation and an Approximate Rate Constancy in Insects.
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- Molecular Biology & Evolution, 2017, v. 34, n. 1, p. 119, doi. 10.1093/molbev/msw226
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- Article
Purifying Selection on Exonic Splice Enhancers in Intronless Genes.
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- Molecular Biology & Evolution, 2016, v. 33, n. 6, p. 1396, doi. 10.1093/molbev/msw018
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- Article
Determinants of the Usage of Splice-Associated cis-Motifs Predict the Distribution of Human Pathogenic SNPs.
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- Molecular Biology & Evolution, 2016, v. 33, n. 2, p. 518, doi. 10.1093/molbev/msv251
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- Article
Isolation and cultivation of naive-like human pluripotent stem cells based on HERVH expression.
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- Nature Protocols, 2016, v. 11, n. 2, p. 327, doi. 10.1038/nprot.2016.016
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- Article
Pluripotency and the endogenous s retrovirus HERVH: Conflict or serendipity?
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- BioEssays, 2016, v. 38, n. 1, p. 109, doi. 10.1002/bies.201500096
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- Article
Genes that Escape X-Inactivation in Humans Have High Intraspecific Variability in Expression, Are Associated with Mental Impairment but Are Not Slow Evolving.
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- Molecular Biology & Evolution, 2016, v. 33, n. 1, p. 302, doi. 10.1093/molbev/msv180
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- Article
The Constrained Maximal Expression Level Owing to Haploidy Shapes Gene Content on the Mammalian X Chromosome.
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- PLoS Biology, 2015, v. 13, n. 12, p. 1, doi. 10.1371/journal.pbio.1002315
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- Article
Parent-progeny sequencing indicates higher mutation rates in heterozygotes.
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- Nature, 2015, v. 523, n. 7561, p. 463, doi. 10.1038/nature14649
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- Article
Genomic Analysis of Isolates From the United Kingdom 2012 Pertussis Outbreak Reveals That Vaccine Antigen Genes Are Unusually Fast Evolving.
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- Journal of Infectious Diseases, 2015, v. 212, n. 2, p. 294, doi. 10.1093/infdis/jiu665
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- Article
Neighboring Genes Show Correlated Evolution in Gene Expression.
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- Molecular Biology & Evolution, 2015, v. 32, n. 7, p. 1748, doi. 10.1093/molbev/msv053
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- Article
Why Selection Might Be Stronger When Populations Are Small: Intron Size and Density Predict within and between-Species Usage of Exonic Splice Associated cis-Motifs.
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- Molecular Biology & Evolution, 2015, v. 32, n. 7, p. 1847, doi. 10.1093/molbev/msv069
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- Article
Causes and consequences of crossing-over evidenced via a high-resolution recombinational landscape of the honey bee.
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- Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-014-0566-0
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- Article
Primate-specific endogenous retrovirus-driven transcription defines naive-like stem cells.
- Published in:
- Nature, 2014, v. 516, n. 7531, p. 405, doi. 10.1038/nature13804
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- Article