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A survey of computational tools for downstream analysis of proteomic and other omic datasets.
- Published in:
- Human Genomics, 2015, v. 9, p. 1, doi. 10.1186/s40246-015-0050-2
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- Publication type:
- Article
Integrating biological knowledge for mechanistic inference in the host-associated microbiome.
- Published in:
- Frontiers in Microbiology, 2024, p. 01, doi. 10.3389/fmicb.2024.1351678
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- Publication type:
- Article
RecSOI: recommending research directions using statements of ignorance.
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- Journal of Biomedical Semantics, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13326-024-00304-3
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- Publication type:
- Article
An open-source framework for large-scale, flexible evaluation of biomedical text mining systems.
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- Journal of Biomedical Discovery & Collaboration, 2008, v. 3, p. 1, doi. 10.1186/1747-5333-3-1
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- Publication type:
- Article
Corpus Refactoring: a Feasibility Study.
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- Journal of Biomedical Discovery & Collaboration, 2007, v. 2, p. 4, doi. 10.1186/1747-5333-2-4
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- Publication type:
- Article
Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognition.
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- Journal of Biomedical Semantics, 2016, p. 1, doi. 10.1186/s13326-016-0096-7
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- Publication type:
- Article
Representing annotation compositionality and provenance for the Semantic Web.
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- Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-38
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- Publication type:
- Article
Reports of the AAAI 2014 Conference Workshops.
- Published in:
- 2015
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- Publication type:
- Proceeding
Approximate Subgraph Matching-Based Literature Mining for Biomedical Events and Relations.
- Published in:
- PLoS ONE, 2013, v. 8, n. 4, p. 1, doi. 10.1371/journal.pone.0060954
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- Publication type:
- Article
Spatial and Temporal Analysis of Gene Expression during Growth and Fusion of the Mouse Facial Prominences.
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- PLoS ONE, 2009, v. 4, n. 12, p. 1, doi. 10.1371/journal.pone.0008066
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- Publication type:
- Article
Gene Expression Profiles of Sporadic Canine Hemangiosarcoma Are Uniquely Associated with Breed.
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- PLoS ONE, 2009, v. 4, n. 5, p. 1, doi. 10.1371/journal.pone.0005549
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- Publication type:
- Article
Nominalization and Alternations in Biomedical Language.
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- PLoS ONE, 2008, v. 3, n. 9, p. 1, doi. 10.1371/journal.pone.0003158
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- Publication type:
- Article
The use or generation of biomedical data and existing medicines to discover and establish new treatments for patients with rare diseases - recommendations of the IRDiRC Data Mining and Repurposing Task Force.
- Published in:
- 2019
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- Publication type:
- journal article
Innate differences in protein expression in the nucleus accumbens and hippocampus of inbred alcohol-preferring and -nonpreferring rats.
- Published in:
- Proteomics, 2003, v. 3, n. 7, p. 1335, doi. 10.1002/pmic.200300453
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- Publication type:
- Article
Some memory, but no mind.
- Published in:
- Behavioral & Brain Sciences, 1988, v. 11, n. 1, p. 37, doi. 10.1017/S0140525X00052572
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- Publication type:
- Article
The learning of function and the function of learning.
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- Behavioral & Brain Sciences, 1986, v. 9, n. 4, p. 672, doi. 10.1017/S0140525X00051827
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- Publication type:
- Article
Transcending inductive category formation in learning.
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- Behavioral & Brain Sciences, 1986, v. 9, n. 4, p. 639, doi. 10.1017/S0140525X00051578
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- Publication type:
- Article
Gold-standard ontology-based anatomical annotation in the CRAFT Corpus.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax087
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- Publication type:
- Article
Multicompartment leaky integrate and fire neuron modeling with multiexponentials.
- Published in:
- BMC Neuroscience, 2009, v. 10, p. 1, doi. 10.1186/1471-2202-10-S1-P277
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- Publication type:
- Article
The topology of the bacterial co-conserved protein network and its implications for predicting protein function.
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- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-313
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- Publication type:
- Article
KaBOB: ontology-based semantic integration of biomedical databases.
- Published in:
- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0559-3
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- Publication type:
- Article
Visual analysis of biological data-knowledge networks.
- Published in:
- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0550-z
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- Publication type:
- Article
KaBOB: ontology-based semantic integration of biomedical databases
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- BMC Bioinformatics, 2015, v. 16, n. 1, p. 126, doi. 10.1186/s12859-015-0559-3
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- Publication type:
- Article
Large-scale biomedical concept recognition: an evaluation of current automatic annotators and their parameters.
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- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-59
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- Publication type:
- Article
A corpus of full-text journal articles is a robust evaluation tool for revealing differences in performance of biomedical natural language processing tools.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. 1, p. 207, doi. 10.1186/1471-2105-13-207
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- Publication type:
- Article
Concept annotation in the CRAFT corpus.
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- BMC Bioinformatics, 2012, v. 13, n. 1, p. 161, doi. 10.1186/1471-2105-13-161
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- Publication type:
- Article
The structural and content aspects of abstracts versus bodies of full text journal articles are different.
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- BMC Bioinformatics, 2010, v. 11, p. 492, doi. 10.1186/1471-2105-11-492
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- Publication type:
- Article
Leveraging existing biological knowledge in the identification of candidate genes for facial dysmorphology.
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- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S2-S12
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- Publication type:
- Article
OpenDMAP: An open source, ontology-driven concept analysis engine, with applications to capturing knowledge regarding protein transport, protein interactions and cell-type-specific gene expression.
- Published in:
- 2008
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- Publication type:
- Product Review
Predicting protein linkages in bacteria: Which method is best depends on task.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-397
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- Publication type:
- Article
Semantic role labeling for protein transport predicates.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-277
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- Publication type:
- Article
Improving protein function prediction methods with integrated literature data.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-198
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- Publication type:
- Article
A critical review of PASBio's argument structures for biomedical verbs.
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- BMC Bioinformatics, 2006, v. 7, p. S5, doi. 10.1186/1471-2105-7-S3-S5
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- Publication type:
- Article
BioCreAtIvE Task 1A: entity identification with a stochastic tagger.
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- BMC Bioinformatics, 2005, v. 6, p. 1, doi. 10.1186/1471-2105-6-S1-S4
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- Publication type:
- Article
Molecular signatures of neoadjuvant endocrine therapy for breast cancer: characteristics of response or intrinsic resistance.
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- Breast Cancer Research & Treatment, 2008, v. 112, n. 3, p. 475, doi. 10.1007/s10549-008-9897-4
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- Publication type:
- Article
AMIA Board white paper: definition of biomedical informatics and specification of core competencies for graduate education in the discipline.
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- Journal of the American Medical Informatics Association, 2012, v. 19, n. 6, p. 931, doi. 10.1136/amiajnl-2012-001053
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- Publication type:
- Article
The PhenoGen Informatics website: tools for analyses of complex traits.
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- BMC Genetics, 2007, v. 8, p. 59, doi. 10.1186/1471-2156-8-59
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- Publication type:
- Article
Rocky Mountain Conference on Bioinformatics Celebrates 10 Years
- Published in:
- 2013
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- Publication type:
- Proceeding
Chapter 16: Text Mining for Translational Bioinformatics.
- Published in:
- PLoS Computational Biology, 2013, v. 9, n. 4, p. 1, doi. 10.1371/journal.pcbi.1003044
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- Publication type:
- Article
Biomedical Discovery Acceleration, with Applications to Craniofacial Development.
- Published in:
- PLoS Computational Biology, 2009, v. 5, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000215
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- Publication type:
- Article
Getting Started in Text Mining.
- Published in:
- PLoS Computational Biology, 2008, v. 4, n. 1, p. e20, doi. 10.1371/journal.pcbi.0040020
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- Publication type:
- Article
Aging promotes acquisition of naive-like CD8+ memory T cell traits and enhanced functionalities.
- Published in:
- 2016
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- Publication type:
- journal article
Examining linguistic shifts between preprints and publications.
- Published in:
- PLoS Biology, 2022, v. 20, n. 2, p. 1, doi. 10.1371/journal.pbio.3001470
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- Publication type:
- Article
Interpersonal prosodic correlation in frontotemporal dementia.
- Published in:
- Annals of Clinical & Translational Neurology, 2019, v. 6, n. 7, p. 1352, doi. 10.1002/acn3.50816
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- Publication type:
- Article
BETA: a comprehensive benchmark for computational drug–target prediction.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 4, p. 1, doi. 10.1093/bib/bbac199
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- Publication type:
- Article
Sierra Leone provides rewarding challenge.
- Published in:
- ATA News, 2019, v. 54, n. 3, p. 9
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- Publication type:
- Article
The most rewarding experience of my career.
- Published in:
- ATA News, 2018, v. 53, n. 2, p. 9
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- Publication type:
- Article
Overseas experience reignites passion for teaching.
- Published in:
- ATA News, 2016, v. 51, n. 3, p. 6
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- Publication type:
- Article
An Intellectual Crisis in American Federalism: The Meaning of Garcia.
- Published in:
- Publius: The Journal of Federalism, 1986, v. 16, n. 3, p. 33
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- Publication type:
- Article
Identification of Genes Controlled by the Pregnane X Receptor by Microarray Analysis of mRNAs from Pregnenolone 16α-Carbonitrile–Treated Rats.
- Published in:
- Toxicological Sciences, 2006, v. 94, n. 2, p. 379, doi. 10.1093/toxsci/kfl116
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- Publication type:
- Article