Works by Huidong Shi

Results: 71

The MLL1-H3K4me3 Axis-Mediated PD-L1 Expression and Pancreatic Cancer Immune Evasion.

Published in:

2017

By:

Chunwan Lu;
Paschall, Amy V.;
Huidong Shi;
Savage, Natasha;
Waller, Jennifer L.;
Sabbatini, Maria E.;
Oberlies, Nicholas H.;
Pearce, Cedric;
Liu, Kebin;
Lu, Chunwan;
Shi, Huidong

Publication type:

journal article

FcRn-Driven Nanoengineered Mucosal Vaccine with Multi-Epitope Fusion Induces Robust Dual Immunity and Long-Term Protection Against Brucella.

Published in:

Vaccines, 2025, v. 13, n. 6, p. 567, doi. 10.3390/vaccines13060567

By:

Tian, Tingting;
Zhu, Yuejie;
Shang, Kaiyu;
Shi, Huidong;
Xu, Ruixue;
Li, Mingzhe;
Pu, Fuling;
Kuang, Junyu;
Ding, Jianbing;
Zhang, Fengbo

Publication type:

Article

Hypomethylation coordinates antagonistically with hypermethylation in cancer development: a case study of leukemia.

Published in:

Human Genomics, 2016, v. 10, p. 83, doi. 10.1186/s40246-016-0071-5

By:

Kushwaha, Garima;
Dozmorov, Mikhail;
Wren, Jonathan D.;
Jing Qiu;
Huidong Shi;
Dong Xu

Publication type:

Article

A Method to Detect Differentially Methylated Loci With Next-Generation Sequencing.

Published in:

Genetic Epidemiology, 2013, v. 37, n. 4, p. 377, doi. 10.1002/gepi.21726

By:

Xu, Hongyan;
Podolsky, Robert H.;
Ryu, Duchwan;
Wang, Xiaoling;
Su, Shaoyong;
Shi, Huidong;
George, Varghese

Publication type:

Article

Simvastatin-Mediated Nrf2 Activation Induces Fetal Hemoglobin and Antioxidant Enzyme Expression to Ameliorate the Phenotype of Sickle Cell Disease.

Published in:

Antioxidants, 2024, v. 13, n. 3, p. 337, doi. 10.3390/antiox13030337

By:

Xi, Caixia;
Palani, Chithra;
Takezaki, Mayuko;
Shi, Huidong;
Horuzsko, Anatolij;
Pace, Betty S.;
Zhu, Xingguo

Publication type:

Article

Myeloid PFKFB3-mediated glycolysis promotes kidney fibrosis.

Published in:

Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1259434

By:

Qiuhua Yang;
Huo, Emily;
Yongfeng Cai;
Zhidan Zhang;
Dong, Charles;
Asara, John M.;
Huidong Shi;
Qingqing Wei

Publication type:

Article

Inhibitors of the CD73- adenosinergic checkpoint as promising combinatory agents for conventional and advanced cancer immunotherapy.

Published in:

Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1212209

By:

Kurago, Zoya;
Gang Guo;
Huidong Shi;
Bollag, Roni J.;
Groves, Michael W.;
Kenneth Byrd, J.;
Yan Cui

Publication type:

Article

Inhibitors of the CD73-adenosinergic checkpoint as promising combinatory agents for conventional and advanced cancer immunotherapy.

Published in:

Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1212209

By:

Zoya Kurago;
Gang Guo;
Huidong Shi;
Bollag, Roni J.;
Groves, Michael W.;
Byrd, J. Kenneth;
Yan Cui

Publication type:

Article

Dual activity of Minnelide chemosensitize basal/triple negative breast cancer stem cells and reprograms immunosuppressive tumor microenvironment.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-72989-6

By:

Koksalar Alkan, Fulya;
Caglayan, Ahmet Burak;
Alkan, Hilmi Kaan;
Benson, Elayne;
Gunduz, Yunus Emre;
Sensoy, Ozge;
Durdagi, Serdar;
Zarbaliyev, Elbrus;
Dyson, Greg;
Assad, Hadeel;
Shull, Austin;
Chadli, Ahmed;
Shi, Huidong;
Ozturk, Gurkan;
Korkaya, Hasan

Publication type:

Article

Spatial pattern and landscape change prediction of blowouts in sandy grassland.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-72911-0

By:

Guo, Ziyue;
Gao, Liang;
Shi, Huidong;
Yu, Ting;
Jiang, Hongtao;
Hai, Chunxing;
Xie, Yunhu;
Zhu, Li

Publication type:

Article

IRF8 Regulates Intrinsic Ferroptosis through Repressing p53 Expression to Maintain Tumor Cell Sensitivity to Cytotoxic T Lymphocytes.

Published in:

Cells (2073-4409), 2023, v. 12, n. 2, p. 310, doi. 10.3390/cells12020310

By:

Poschel, Dakota B.;
Kehinde-Ige, Mercy;
Klement, John D.;
Yang, Dafeng;
Merting, Alyssa D.;
Savage, Natasha M.;
Shi, Huidong;
Liu, Kebin

Publication type:

Article

Targeted bisulfite sequencing by solution hybrid selection and massively parallel sequencing.

Published in:

Nucleic Acids Research, 2011, v. 39, n. 19, p. e127, doi. 10.1093/nar/gkr598

By:

Lee, Eun-Joon;
Pei, Lirong;
Srivastava, Gyan;
Joshi, Trupti;
Kushwaha, Garima;
Choi, Jeong-Hyeon;
Robertson, Keith D.;
Wang, Xinguo;
Colbourne, John K.;
Zhang, Lu;
Schroth, Gary P.;
Xu, Dong;
Zhang, Kun;
Shi, Huidong

Publication type:

Article

Epigenetic interaction between UTX and DNMT1 regulates diet-induced myogenic remodeling in brown fat.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-27141-7

By:

Li, Fenfen;
Jing, Jia;
Movahed, Miranda;
Cui, Xin;
Cao, Qiang;
Wu, Rui;
Chen, Ziyue;
Yu, Liqing;
Pan, Yi;
Shi, Huidong;
Shi, Hang;
Xue, Bingzhong

Publication type:

Article

Adipose tissue-derived neurotrophic factor 3 regulates sympathetic innervation and thermogenesis in adipose tissue.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25766-2

By:

Cui, Xin;
Jing, Jia;
Wu, Rui;
Cao, Qiang;
Li, Fenfen;
Li, Ke;
Wang, Shirong;
Yu, Liqing;
Schwartz, Gary;
Shi, Huidong;
Xue, Bingzhong;
Shi, Hang

Publication type:

Article

Soy Isoflavones Have an Antiestrogenic Effect and Alter Mammary Promoter Hypermethylation in Healthy Premenopausal Women.

Published in:

Nutrition & Cancer, 2009, v. 61, n. 2, p. 238, doi. 10.1080/01635580802404196

By:

Qin, Wenyi;
Zhu, Weizhu;
Shi, Huidong;
Hewett, JohnE.;
Ruhlen, RachelL.;
MacDonald, RuthS.;
Rottinghaus, GeorgeE.;
Chen, Yin-Chieh;
Sauter, EdwardR.

Publication type:

Article

MBD3 Localizes at Promoters, Gene Bodies and Enhancers of Active Genes.

Published in:

PLoS Genetics, 2013, v. 9, n. 12, p. 1, doi. 10.1371/journal.pgen.1004028

By:

Shimbo, Takashi;
Du, Ying;
Grimm, Sara A.;
Dhasarathy, Archana;
Mav, Deepak;
Shah, Ruchir R.;
Shi, Huidong;
Wade, Paul A.

Publication type:

Article

Brown Fat Dnmt3b Deficiency Ameliorates Obesity in Female Mice.

Published in:

Life (2075-1729), 2021, v. 11, n. 12, p. 1325, doi. 10.3390/life11121325

By:

Li, Fenfen;
Cui, Xin;
Jing, Jia;
Wang, Shirong;
Shi, Huidong;
Xue, Bingzhong;
Shi, Hang

Publication type:

Article

Detection of Differentially Methylated Regions Using Bayes Factor for Ordinal Group Responses.

Published in:

Genes, 2019, v. 10, n. 9, p. 721, doi. 10.3390/genes10090721

By:

Dunbar, Fengjiao;
Xu, Hongyan;
Ryu, Duchwan;
Ghosh, Santu;
Shi, Huidong;
George, Varghese

Publication type:

Article

Computational Methods for Detection of Differentially Methylated Regions Using Kernel Distance and Scan Statistics.

Published in:

Genes, 2019, v. 10, n. 4, p. 298, doi. 10.3390/genes10040298

By:

Dunbar, Faith;
Xu, Hongyan;
Ryu, Duchwan;
Ghosh, Santu;
Shi, Huidong;
George, Varghese

Publication type:

Article

Adenosine kinase inhibition protects mice from abdominal aortic aneurysm via epigenetic modulation of VSMC inflammation.

Published in:

Cardiovascular Research, 2024, v. 120, n. 10, p. 1202, doi. 10.1093/cvr/cvae093

By:

Xu, Jiean;
Liu, Zhiping;
Yang, Qiuhua;
Ma, Qian;
Zhou, Yaqi;
Cai, Yongfeng;
Zhao, Dingwei;
Zhao, Guizhen;
Lu, Tammy;
Ouyang, Kunfu;
Hong, Mei;
Kim, Ha Won;
Shi, Huidong;
Zhang, Jifeng;
Fulton, David;
Miller, Clint;
Malhotra, Rajeev;
Weintraub, Neal L;
Huo, Yuqing

Publication type:

Article

FKBP12.6 protects heart from AngII‐induced hypertrophy through inhibiting Ca<sup>2+</sup>/calmodulin‐mediated signalling pathways in vivo and in vitro.

Published in:

Journal of Cellular & Molecular Medicine, 2018, v. 22, n. 7, p. 3638, doi. 10.1111/jcmm.13645

By:

Xiao, Yun‐Fei;
Zeng, Zhi‐Xiong;
Guan, Xiao‐Hui;
Wang, Ling‐Fang;
Wang, Chan‐Juan;
Shi, Huidong;
Shou, Weinian;
Deng, Ke‐Yu;
Xin, Hong‐Bo

Publication type:

Article

An epigenome-wide study of obesity in African American youth and young adults: novel findings, replication in neutrophils, and relationship with gene expression.

Published in:

Clinical Epigenetics, 2018, v. 10, p. 1, doi. 10.1186/s13148-017-0435-2

By:

Wang, Xiaoling;
Pan, Yue;
Zhu, Haidong;
Hao, Guang;
Huang, Yisong;
Barnes, Vernon;
Shi, Huidong;
Snieder, Harold;
Pankow, James;
North, Kari;
Grove, Megan;
Guan, Weihua;
Demerath, Ellen;
Dong, Yanbin;
Su, Shaoyong

Publication type:

Article

NRF2 mediates γ-globin gene regulation through epigenetic modifications in a β-YAC transgenic mouse model.

Published in:

Experimental Biology & Medicine, 2020, v. 245, n. 15, p. 1308, doi. 10.1177/1535370220945305

By:

Zhu, Xingguo;
Xi, Caixia;
Ward, Alexander;
Takezaki, Mayuko;
Shi, Huidong;
Peterson, Kenneth R;
Pace, Betty S

Publication type:

Article

Oligonucleotide-based microarray for DNA methylation analysis: Principles and applications.

Published in:

Journal of Cellular Biochemistry, 2003, v. 88, n. 1, p. 138, doi. 10.1002/jcb.10313

By:

Shi, Huidong;
Maier, Sabine;
Nimmrich, Inko;
Yan, Pearlly S.;
Caldwell, Charles W.;
Olek, Alexander;
Huang, Tim Hui-Ming

Publication type:

Article

The expression of RUNDC3B is associated with promoter methylation in lymphoid malignancies.

Published in:

2017

By:

Burmeister, Dane W.;
Smith, Emily H.;
Cristel, Robert T.;
McKay, Stephanie D.;
Shi, Huidong;
Arthur, Gerald L.;
Davis, Justin Wade;
Taylor, Kristen H.

Publication type:

journal article

On-line metabolic pathway analysis based on metabolic signal flow diagram.

Published in:

Biotechnology & Bioengineering, 1998, v. 58, n. 2/3, p. 139, doi. 10.1002/(SICI)1097-0290(19980420)58:2/3<139::AID-BIT5>3.0.CO;2-M

By:

Shi, Huidong;
Shimizu, Kazuyuki

Publication type:

Article

CAME: identification of chromatin accessibility from nucleosome occupancy and methylome sequencing.

Published in:

Bioinformatics, 2017, v. 33, n. 8, p. 1139, doi. 10.1093/bioinformatics/btw785

By:

Yongjun Piao;
Seong Keon Lee;
Eun-Joon Lee;
Robertson, Keith D.;
Huidong Shi;
Keun Ho Ryu;
Jeong-Hyeon Choi

Publication type:

Article

PRIMEGENS-v2: genome-wide primer design for analyzing DNA methylation patterns of CpG islands.

Published in:

Bioinformatics, 2008, v. 24, n. 17, p. 1837, doi. 10.1093/bioinformatics/btn320

By:

Srivastava, Gyan P.;
Juyuan Guo;
Huidong Shi;
Dong Xu

Publication type:

Article

Discovery and Validation of a Novel Neutrophil Activation Marker Associated with Obesity.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-39764-4

By:

Pan, Yue;
Choi, Jeong-Hyeon;
Shi, Huidong;
Zhang, Liwen;
Su, Shaoyong;
Wang, Xiaoling

Publication type:

Article

Correction: Regulation of the tuft cell-ILC2 circuit in intestinal mucosal immunity.

Published in:

2025

By:

Shang, Kaiyu;
Qi, Xinxin;
Tian, Tingting;
Shi, Huidong;
Zhu, Yuejie;
Zhang, Fengbo

Publication type:

Correction Notice

Regulation of the tuft cell-ILC2 circuit in intestinal mucosal immunity.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1568062

By:

Shang, Kaiyu;
Qi, Xinxin;
Tian, Tingting;
Shi, Huidong;
Zhu, Yuejie;
Zhang, Fengbo

Publication type:

Article

Regulation of the tuft cell-ILC2 circuit in intestinal mucosal immunity.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1568062

By:

Shang, Kaiyu;
Qi, Xinxin;
Tian, Tingting;
Shi, Huidong;
Zhu, Yuejie;
Zhang, Fengbo

Publication type:

Article

Novel dual-pathogen multi-epitope mRNA vaccine development for Brucella melitensis and Mycobacterium tuberculosis in silico approach.

Published in:

PLoS ONE, 2024, v. 19, n. 10, p. 1, doi. 10.1371/journal.pone.0309560

By:

Zhu, Yuejie;
Shi, Juan;
Wang, Quan;
Zhu, Yun;
Li, Min;
Tian, Tingting;
Shi, Huidong;
Shang, Kaiyu;
Yin, Zhengwei;
Zhang, Fengbo

Publication type:

Article

Development of innovative multi-epitope mRNA vaccine against central nervous system tuberculosis using in silico approaches.

Published in:

PLoS ONE, 2024, v. 19, n. 9, p. 1, doi. 10.1371/journal.pone.0307877

By:

Shi, Huidong;
Zhu, Yuejie;
Shang, Kaiyu;
Tian, Tingting;
Yin, Zhengwei;
Shi, Juan;
He, Yueyue;
Ding, Jianbing;
Wang, Quan;
Zhang, Fengbo

Publication type:

Article

Enhanced properties of starch based foams with modified starch/polyester blend as masterbatch.

Published in:

Journal of Applied Polymer Science, 2022, v. 139, n. 39, p. 1, doi. 10.1002/app.52951

By:

Shi, Huidong;
Zhu, Yanfeng;
Ju, Qing;
Shen, Yucai;
Wang, Tingwei

Publication type:

Article

HOXC9 directly regulates distinct sets of genes to coordinate diverse cellular processes during neuronal differentiation.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-830

By:

Xiangwei Wang;
Jeong-Hyeon Choi;
Jane Ding;
Liqun Yang;
Ngoka, Lambert C.;
Lee, Eun J.;
Yunhong Zha;
Ling Mao;
Bilian Jin;
Mingqiang Ren;
Cowell, John;
Shuang Huang;
Huidong Shi;
Hongjuan Cui;
Han-Fei Ding

Publication type:

Article

Development cues and persistent neurogenic potential within an in vitro neural niche.

Published in:

BMC Developmental Biology, 2010, v. 10, p. 5, doi. 10.1186/1471-213X-10-5

By:

Pierret, Chris;
Morrison, Jason A.;
Rath, Prakash;
Zigler, Rachel E.;
Engel, Laura A.;
Fairchild, Corinne L.;
Huidong Shi;
Maruniak, Joel A.;
Kirk, Mark D.

Publication type:

Article

A similar effect of P16 hydroxymethylation and true-methylation on the prediction of malignant transformation of oral epithelial dysplasia: observation from a prospective study.

Published in:

2018

By:

Liu, Hongwei;
Liu, Zhaojun;
Liu, Xue-wei;
Xu, Si;
Wang, Lei;
Liu, Yang;
Zhou, Jing;
Gu, Liankun;
Gao, Yan;
Liu, Xiao-yong;
Shi, Huidong;
Sun, Zheng;
Deng, Dajun

Publication type:

journal article

Haemophagocytic lymphohistiocytosis occurred during induction chemotherapy in an acute monocytic leukemia patient with FLT3-ITD and DNMT3A mutations.

Published in:

2018

By:

Li, Fei;
Zhang, Xiaojie;
Wang, Yunyun;
Yang, Ailin;
Zhang, Zhanglin;
Tang, Weiping;
Zhong, Nan;
Shi, Huidong

Publication type:

journal article

Dual Therapeutic Utility of Proteasome Modulating Agents for Pharmaco-gene Therapy of the Cystic Fibrosis Airway

Published in:

Molecular Therapy, 2004, v. 10, n. 6, p. 990, doi. 10.1016/j.ymthe.2004.08.009

By:

Zhang, Liang N.;
Karp, Phil;
Gerard, Christopher J.;
Pastor, Eric;
Laux, Douglas;
Munson, Keith;
Yan, Ziying;
Liu, Xiaoming;
Godwin, Simon;
Thomas, Christie P.;
Zabner, Joseph;
Shi, Huidong;
Caldwell, Charles W.;
Peluso, Richard;
Carter, Barrie;
Engelhardt, John F.

Publication type:

Article

Dnmt3b Deficiency in Myf5 + -Brown Fat Precursor Cells Promotes Obesity in Female Mice.

Published in:

Biomolecules (2218-273X), 2021, v. 11, n. 8, p. 1087, doi. 10.3390/biom11081087

By:

Wang, Shirong;
Cao, Qiang;
Cui, Xin;
Jing, Jia;
Li, Fenfen;
Shi, Huidong;
Xue, Bingzhong;
Shi, Hang

Publication type:

Article

Design of a novel EmTSP-3 and EmTIP based multi-epitope vaccine against Echinococcus multilocularis infection.

Published in:

Frontiers in Immunology, 2024, p. 01, doi. 10.3389/fimmu.2024.1425603

By:

Yichen Fan;
Yueyue He;
Yujiao Li;
Zhengwei Yin;
Juan Shi;
Tingting Tian;
Kaiyu Shang;
Huidong Shi;
Fengbo Zhang;
Hao Wen

Publication type:

Article

DNMT1 is essential for mammary and cancer stem cell maintenance and tumorigenesis.

Published in:

Nature Communications, 2015, v. 6, n. 4, p. 6910, doi. 10.1038/ncomms7910

By:

Pathania, Rajneesh;
Ramachandran, Sabarish;
Elangovan, Selvakumar;
Padia, Ravi;
Yang, Pengyi;
Cinghu, Senthilkumar;
Veeranan-Karmegam, Rajalakshmi;
Arjunan, Pachiappan;
Gnana-Prakasam, Jaya P.;
Sadanand, Fulzele;
Pei, Lirong;
Chang, Chang-Sheng;
Choi, Jeong-Hyeon;
Shi, Huidong;
Manicassamy, Santhakumar;
Prasad, Puttur D;
Sharma, Suash;
Ganapathy, Vadivel;
Jothi, Raja;
Thangaraju, Muthusamy

Publication type:

Article

Integrative analysis of multiple types of genomic data using an accelerated failure time frailty model.

Published in:

Computational Statistics, 2021, v. 36, n. 2, p. 1499, doi. 10.1007/s00180-020-01060-5

By:

Deng, Shirong;
Chen, Jie;
Shi, Huidong

Publication type:

Article

Comparative Study on Properties of PBAT/PBSA Film Modified by a Multi-Functional Epoxide Chain Extender or Benzoyl Peroxide.

Published in:

Journal of Renewable Materials, 2023, v. 11, n. 3, p. 1303, doi. 10.32604/jrm.2022.023129

By:

Yanfeng Zhu;
Huidong Shi;
Qing Ju;
Dong Zhao;
Yucai Shen;
Tingwei Wang

Publication type:

Article

Single-cell analysis defines highly specific leukemia-induced neutrophils and links MMP8 expression to recruitment of tumor associated neutrophils during FGFR1 driven leukemogenesis.

Published in:

Experimental Hematology & Oncology, 2024, v. 13, n. 1, p. 1, doi. 10.1186/s40164-024-00514-6

By:

Hu, Tianxiang;
Cheng, Bo;
Matsunaga, Atsuko;
Zhang, Ting;
Lu, Xiaocui;
Fang, Hui;
Mori, Stephanie F.;
Fang, Xuexiu;
Wang, Gavin;
Xu, Hongyan;
Shi, Huidong;
Cowell, John K.

Publication type:

Article

The Monocytes That Repopulate in Mice After Cyclophosphamide Treatment Acquire a Neutrophil Precursor Gene Signature and Immunosuppressive Activity.

Published in:

Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2020.594540

By:

Ding, Zhi-Chun;
Aboelella, Nada S.;
Bryan, Locke;
Shi, Huidong;
Zhou, Gang

Publication type:

Article

Long non-coding RNAs transcribed by ERV-9 LTR retrotransposon act in cis to modulate long-range LTR enhancer function.

Published in:

Nucleic Acids Research, 2017, v. 45, n. 8, p. 4479, doi. 10.1093/nar/gkx055

By:

Tianxiang Hu;
Wenhu Pi;
Xingguo Zhu;
Miao Yu;
Hongseok Ha;
Huidong Shi;
Jeong-Hyeon Choi;
Dorothy Tuan

Publication type:

Article

Restoring FAS Expression via Lipid-Encapsulated FAS DNA Nanoparticle Delivery Is Sufficient to Suppress Colon Tumor Growth In Vivo.

Published in:

Cancers, 2022, v. 14, n. 2, p. 361, doi. 10.3390/cancers14020361

By:

Merting, Alyssa D.;
Poschel, Dakota B.;
Lu, Chunwan;
Klement, John D.;
Yang, Dafeng;
Li, Honglin;
Shi, Huidong;
Chapdelaine, Eric;
Montgomery, Mitzi;
Redman, Michael T.;
Savage, Natasha M.;
Nayak-Kapoor, Asha;
Liu, Kebin

Publication type:

Article

A survey of computational methods in transcriptome-wide alternative splicing analysis.

Published in:

Biomolecular Concepts, 2015, v. 6, n. 1, p. 59, doi. 10.1515/bmc-2014-0040

By:

Jianbo Wang;
Zhenqing Ye;
Huang, Tim H.-M.;
Huidong Shi;
Victor Jin

Publication type:

Article