Works matching AU Hughes, Austin L.

Results: 101

Mitochondrial Genome Sequences Support Ancient Population Expansion in Plasmodium vivax.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 8, p. 1733, doi. 10.1093/molbev/msi168

By:

Jongwutiwes, Somchai;
Putaporntip, Chaturong;
Iwasaki, Takuya;
Ferreira, Marcelo U.;
Kanbara, Hiroji;
Hughes, Austin L.

Publication type:

Article

Variation in the Pattern of Synonymous and Nonsynonymous Difference Between Two Fungal Genomes.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 5, p. 1320, doi. 10.1093/molbev/msi120

By:

Hughes, Austin L.;
Friedman, Robert

Publication type:

Article

The Pattern of Nucleotide Difference at Individual Codons Among Mouse, Rat, and Human.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 5, p. 1285, doi. 10.1093/molbev/msi113

By:

Friedman, Robert;
Hughes, Austin L.

Publication type:

Article

Codon Volatility As an Indicator of Positive Selection: Data from Eukaryotic Genome Comparisons.

Published in:

Molecular Biology & Evolution, 2005, v. 22, n. 3, p. 542, doi. 10.1093/molbev/msi038

By:

Friedman, Robert;
Hughes, Austin L.

Publication type:

Article

Two Patterns of Genome Organization in Mammals: the Chromosomal Distribution of Duplicate Genes in Human and Mouse.

Published in:

Molecular Biology & Evolution, 2004, v. 21, n. 6, p. 1008, doi. 10.1093/molbev/msh076

By:

Friedman, Robert;
Hughes, Austin L.

Publication type:

Article

Aspartic Proteinase Phylogeny and the Origin of Pregnancy-Associated Glycoproteins.

Published in:

Molecular Biology & Evolution, 2003, v. 20, n. 11, p. 1940, doi. 10.1093/molbev/msg217

By:

Hughes, Austin L.;
Green, Jonathan A.;
Piontkivska, Helen;
Roberts, R. Michael

Publication type:

Article

Genome-Wide Survey for Genes Horizontally Transferred from Cellular Organisms to Baculoviruses.

Published in:

Molecular Biology & Evolution, 2003, v. 20, n. 6, p. 979, doi. 10.1093/molbev/msg107

By:

Hughes, Austin L.;
Friedman, Robert

Publication type:

Article

Phylogeny of Trypanosomatidae and Bodonidae (Kinetoplastida) Based on 18S rRNA: Evidence for Paraphyly of Trypanosoma and Six Other Genera.

Published in:

Molecular Biology & Evolution, 2003, v. 20, n. 4, p. 644, doi. 10.1093/molbev/msg062

By:

Hughes, Austin L.;
Piontkivska, Helen

Publication type:

Article

The Temporal Distribution of Gene Duplication Events in a Set of Highly Conserved Human Gene Families.

Published in:

Molecular Biology & Evolution, 2003, v. 20, n. 1, p. 154, doi. 10.1093/molbev/msg017

By:

Friedman, Robert;
Hughes, Austin L.

Publication type:

Article

The Extent of Nucleotide Polymorphism is Highly Variable Across a 3-kb Region on Plasmodium falciparum Chromosome 2.

Published in:

Molecular Biology & Evolution, 2002, v. 19, n. 9, p. 1585, doi. 10.1093/oxfordjournals.molbev.a004220

By:

Jongwutiwes, Somchai;
Putaporntip, Chaturong;
Friedman, Robert;
Hughes, Austin L.

Publication type:

Article

Evolutionary Diversification of Protein-Coding Genes of Hantaviruses.

Published in:

Molecular Biology & Evolution, 2000, v. 17, n. 10, p. 1558, doi. 10.1093/oxfordjournals.molbev.a026254

By:

Hughes, Austin L.;
Friedman, Robert

Publication type:

Article

The evolutionary biology of viruses, Stephen S. Morse, ed., New York: Raven Press, 1993, xi + 353 pages, $69.00.

Published in:

Genetic Epidemiology, 1994, v. 11, n. 5, p. 453, doi. 10.1002/gepi.1370110508

By:

Hughes, Austin L.

Publication type:

Article

MHC polymorphism and the design of captive breeding programs.

Published in:

Conservation Biology, 1991, v. 5, n. 2, p. 249, doi. 10.1111/j.1523-1739.1991.tb00130.x

By:

Hughes, Austin L.

Publication type:

Article

MHC Heterozygote Advantage in Simian Immunodeficiency Virus-Infected Mauritian Cynomolgus Macaques.

Published in:

Science Translational Medicine, 2010, v. 2, n. 22, p. 1, doi. 10.1126/scitranslmed.3000524

By:

O'Connor, Shelby L.;
Lhost, Jennifer J.;
Becker, Ericka A.;
Detmer, Ann M.;
Johnson, Randall C.;
MacNair, Caitlin E.;
Wiseman, Roger W.;
Karl, Julie A.;
Greene, Justin M.;
Burwitz, Benjamin J.;
Bimber, Benjamin N.;
Lank, Simon M.;
Tuscher, Jennifer J.;
Mee, Edward T.;
Rose, Nicola J.;
Desrosiers, Ronald C.;
Hughes, Austin L.;
Friedrich, Thomas C.;
Carrington, Mary;
O'Connor, David H.

Publication type:

Article

Rapid Evolution of the Trophoblast Kunitz Domain Proteins (TKDPs)—A Multigene Family in Ruminant Ungulates.

Published in:

Journal of Molecular Evolution, 2006, v. 63, n. 2, p. 274, doi. 10.1007/s00239-005-0264-3

By:

Chakrabarty, Anindita;
MacLean, James A.;
Hughes, Austin L.;
Roberts, R. Michael;
Green, Jonathan A.

Publication type:

Article

Gene Duplication and the Properties of Biological Networks.

Published in:

Journal of Molecular Evolution, 2005, v. 61, n. 6, p. 758, doi. 10.1007/s00239-005-0037-z

By:

Hughes, Austin L.;
Friedman, Robert

Publication type:

Article

Expression Patterns of Duplicate Genes in the Developing Root inArabidopsis thaliana.

Published in:

Journal of Molecular Evolution, 2005, v. 60, n. 2, p. 247, doi. 10.1007/s00239-004-0171-z

By:

Hughes, Austin L.;
Friedman, Robert

Publication type:

Article

Recent Mammalian Gene Duplications: Robust Search for Functionally Divergent Gene Pairs.

Published in:

Journal of Molecular Evolution, 2004, v. 59, n. 1, p. 114, doi. 10.1007/s00239-004-2616-9

By:

Hughes, Austin L.;
Friedman, Robert

Publication type:

Article

Evolution of Vertebrate Voltage-Gated Ion Channel α Chains by Sequential Gene Duplication.

Published in:

Journal of Molecular Evolution, 2003, v. 56, n. 3, p. 277, doi. 10.1007/s00239-002-2399-9

By:

Piontkivska, Helen;
Hughes, Austin L.

Publication type:

Article

Characterization and Phylogenetic Relationship of Prosimian MHC Class I Genes.

Published in:

Journal of Molecular Evolution, 2002, v. 55, n. 6, p. 768, doi. 10.1007/s00239-002-2372-7

By:

Flügge, Perris;
Zimmermann, Elke;
Hughes, Austin L.;
Günther, Eberhard;
Walter, Lutz

Publication type:

Article

Origin and Evolution of Viral Interleukin-10 and Other DNA Virus Genes with Vertebrate Homologues.

Published in:

Journal of Molecular Evolution, 2002, v. 54, n. 1, p. 90, doi. 10.1007/s00239-001-0021-1

By:

Hughes, Austin L.

Publication type:

Article

Evolution of the Integrin α and β Protein Families.

Published in:

Journal of Molecular Evolution, 2001, v. 52, n. 1, p. 63, doi. 10.1007/s002390010134

By:

Hughes, Austin L.

Publication type:

Article

Indices of Anseriform body shape based on the relative size of major skeletal elements and their relationship to reproductive effort.

Published in:

Ibis (0019-1019), 2013, v. 155, n. 4, p. 835, doi. 10.1111/ibi.12087

By:

Hughes, Austin L.;
Battley, Phil

Publication type:

Article

Reassortment of Ancient Neuraminidase and Recent Hemagglutinin in Pandemic (H1N1) 2009 Virus.

Published in:

Emerging Infectious Diseases, 2010, v. 16, n. 11, p. 1748, doi. 10.3201/eid1611.100361

By:

Bhoumik, Priyasma;
Hughes, Austin L.

Publication type:

Article

Genomewide pattern of synonymous nucleotide substitution in two complete genomes of Mycobacterium tuberculosis.

Published in:

2002

By:

Hughes, Austin L.;
Friedman, Robert;
Murray, Megan

Publication type:

journal article

Within-host evolution of CD8+-TL epitopes encoded by overlapping and non-overlapping reading frames of simian immunodeficiency virus.

Published in:

Bioinformatics, 2005, v. 21, p. iii39, doi. 10.1093/bioinformatics/bti1203

By:

Hughes, Austin L.;
Piontkivska, Helen;
Krebs, Kendall C.;
O'Connor, David H.;
Watkins, David I.

Publication type:

Article

Dblox: a genome-wide test for ancient segmental duplication.

Published in:

Bioinformatics, 2004, v. 20, n. 16, p. 2834, doi. 10.1093/bioinformatics/bth275

By:

Robert Friedman;
Vikram Ekollu;
John R. Rose;
Austin L. Hughes

Publication type:

Article

Experimental Analysis of Sources of Error in Evolutionary Studies Based on Roche/454 Pyrosequencing of Viral Genomes.

Published in:

Genome Biology & Evolution, 2012, v. 4, n. 9, p. 457, doi. 10.1093/gbe/evs029

By:

Becker, Ericka A.;
Burns, Charles M.;
León, Enrique J.;
Rajabojan, Saravanan;
Friedman, Robert;
Friedrich, Thomas C.;
O'Connor, Shelby L.;
Hughes, Austin L.

Publication type:

Article

EVOLUTION IN THE POST-GENOME ERA.

Published in:

Perspectives in Biology & Medicine, 2009, v. 52, n. 2, p. 332, doi. 10.1353/pbm.0.0090

By:

Hughes, Austin L.

Publication type:

Article

Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection.

Published in:

Nature, 1988, v. 335, n. 6186, p. 167, doi. 10.1038/335167a0

By:

Hughes, Austin L.;
Nei, Masatoshi

Publication type:

Article

Testing for Behavioral Lateralization in Observational Data: a Monte Carlo Approach Applied to Neck-looping in American Flamingos.

Published in:

Wilson Journal of Ornithology, 2014, v. 126, n. 2, p. 345, doi. 10.1676/13-122.1

By:

Hughes, Austin L.;
Cauthen, Jonathan;
Driscoll, Caroline

Publication type:

Article

Polymorphism at the apical membrane antigen 1 locus reflects the world population history of Plasmodium vivax.

Published in:

BMC Evolutionary Biology, 2008, v. 8, p. 1, doi. 10.1186/1471-2148-8-123

By:

Grynberg, Priscila;
Fontes, Jesus F.;
Hughes, Austin L.;
Braga, É M.

Publication type:

Article

DNA repeat arrays in chicken and human genomes and the adaptive evolution of avian genome size.

Published in:

BMC Evolutionary Biology, 2005, v. 5, p. 12, doi. 10.1186/1471-2148-5-12

By:

Hughes, Austin L;
Piontkivska, Helen

Publication type:

Article

Selection Maintains Low Genomic GC Content in Marine SAR11 Lineages.

Published in:

Molecular Biology & Evolution, 2015, v. 32, n. 10, p. 2738, doi. 10.1093/molbev/msv149

By:

Haiwei Luo;
Thompson, Luke R.;
Stingl, Ulrich;
Hughes, Austin L.

Publication type:

Article

Genome Reduction by Deletion of Paralogs in the Marine Cyanobacterium Prochlorococcus.

Published in:

Molecular Biology & Evolution, 2011, v. 28, n. 10, p. 2751, doi. 10.1093/molbev/msr081

By:

Luo, Haiwei;
Friedman, Robert;
Tang, Jijun;
Hughes, Austin L.

Publication type:

Article

Genome Size Reduction in the Chicken Has Involved Massive Loss of Ancestral Protein-Coding Genes.

Published in:

Molecular Biology & Evolution, 2008, v. 25, n. 12, p. 2681, doi. 10.1093/molbev/msn207

By:

Hughes, Austin L.;
Friedman, Robert

Publication type:

Article

Synonymous and Nonsynonymous Polymorphisms versus Divergences in Bacterial Genomes.

Published in:

Molecular Biology & Evolution, 2008, v. 25, n. 10, p. 2199, doi. 10.1093/molbev/msn166

By:

Hughes, Austin L.;
Friedman, Robert;
Rivailler, Pierre;
French, Jeffrey O.

Publication type:

Article

Class I and class II MHC bind self peptide sets that are strikingly different in their evolutionary characteristics.

Published in:

Immunogenetics, 2000, v. 51, n. 1, p. 8, doi. 10.1007/s002510050002

By:

Yeager, Meredith;
Carrington, Mary;
Hughes, Austin L.

Publication type:

Article

SNPGenie: estimating evolutionary parameters to detect natural selection using pooled next-generation sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3709, doi. 10.1093/bioinformatics/btv449

By:

Nelson, Chase W.;
Moncla, Louise H.;
Hughes, Austin L.

Publication type:

Article

Natural selection and the diversification of vertebrate immune effectors.

Published in:

Immunological Reviews, 2002, v. 190, n. 1, p. 161, doi. 10.1034/j.1600-065X.2002.19012.x

By:

Hughes, Austin L.

Publication type:

Article

Major histocompatibility complex class I genes in primates: co-evolution with pathogens.

Published in:

Immunological Reviews, 1999, v. 167, n. 1, p. 327, doi. 10.1111/j.1600-065X.1999.tb01402.x

By:

Vogel, Thorsten U.;
Evans, David T.;
Urvater, Julie A.;
O'Connor, David H.;
Hughes, Austin L.;
Watkins, David I.

Publication type:

Article

Evolution of the mammalian MHC: natural selection, recombination, and convergent evolution.

Published in:

Immunological Reviews, 1999, v. 167, n. 1, p. 45, doi. 10.1111/j.1600-065X.1999.tb01381.x

By:

Yeager, Meredith;
Hughes, Austin L.

Publication type:

Article

Molecular evolution of the vertebrate immune system.

Published in:

BioEssays, 1997, v. 19, n. 9, p. 777, doi. 10.1002/bies.950190907

By:

Hughes, Austin L.;
Yeager, Meredith

Publication type:

Article

Evolution of the Heme Peroxidases of Culicidae (Diptera).

Published in:

Psyche: A Journal of Entomology, 2012, p. 1, doi. 10.1155/2012/146387

By:

Hughes, Austin L.

Publication type:

Article

Evolutionary analysis of a streamlined lineage of surface ocean Roseobacters.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 7, p. 1428, doi. 10.1038/ismej.2013.248

By:

Luo, Haiwei;
Swan, Brandon K;
Stepanauskas, Ramunas;
Hughes, Austin L;
Moran, Mary Ann

Publication type:

Article

Stability of social behavior in captive American Flamingos ( Phoenicopterus ruber): A quantitative case study.

Published in:

Zoo Biology, 2015, v. 34, n. 4, p. 305, doi. 10.1002/zoo.21215

By:

Hughes, Austin L.

Publication type:

Article

Behavioral Correlates of Post-Breeding Weight Change in a Captive Flock of American Flamingos ( Phoenicopterus ruber ruber).

Published in:

Zoo Biology, 2013, v. 32, n. 2, p. 204, doi. 10.1002/zoo.21059

By:

Hughes, Austin L.;
Raynes, Amber;
Driscoll, Caroline;
Babler, Jenna

Publication type:

Article

Reversion of CTL escape-variant immunodeficiency viruses in vivo.

Published in:

Nature Medicine, 2004, v. 10, n. 3, p. 275, doi. 10.1038/nm998

By:

Friedrich, Thomas C.;
Dodds, Elizabeth J.;
Yant, Levi J.;
Vojnov, Lara;
Rudersdorf, Richard;
Cullen, Candice;
Evans, David T.;
Desrosiers, Ronald C.;
Mothé, Bianca R.;
Sidney, John;
Sette, Alessandro;
Kunstman, Kevin;
Wolinsky, Steven;
Piatak, Michael;
Lifson, Jeffrey;
Hughes, Austin L.;
Wilson, Nancy;
O'Connor, David H.;
Watkins, David I.

Publication type:

Article

Acute phase cytotoxic T lymphocyte escape is a hallmark of simian immunodeficiency virus infection.

Published in:

Nature Medicine, 2002, v. 8, n. 5, p. 493, doi. 10.1038/nm0502-493

By:

O'Connor, David H.;
Allen, Todd M.;
Vogel, Thorsten U.;
Jing, Peicheng;
DeSouza, Ivna P.;
Dodds, Elizabeth;
Dunphy, Edward J.;
Melsaether, Cheri;
Mothé, Bianca;
Yamamoto, Hiroshi;
Horton, Helen;
Wilson, Nancy;
Hughes, Austin L.;
Watkins, David I.

Publication type:

Article

Virus-specific cytotoxic T-lymphocyte responses select for amino-acid variation in simian immunodeficiency virus Env and Nef.

Published in:

Nature Medicine, 1999, v. 5, n. 11, p. 1270, doi. 10.1038/15224

By:

Evans, David T.;
O'Connor, David H.;
Jing, Peicheng;
Dzuris, John L.;
Sidney, John;
da Silva, Jack;
Allen, Todd M.;
Horton, Helen;
Venham, John E.;
Rudersdorf, Richard A.;
Vogel, Thorsten;
Pauza, C. David;
Bontrop, Ronald E.;
DeMars, Robert;
Sette, Alessandro;
Hughes, Austin L.;
Watkins, David I.

Publication type:

Article