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Potential contribution of fungal infection and colonization to the development of allergy.
Published in:
Medical Mycology, 2009, v. 47, n. 5, p. 445, doi. 10.1080/13693780802641904
By:
- Goldman, David L.;
- Huffnagle, Gary B.
Publication type:
Article
Control of mucosal polymicrobial populations by innate immunity.
Published in:
Cellular Microbiology, 2009, v. 11, n. 9, p. 1297, doi. 10.1111/j.1462-5822.2009.01347.x
By:
- Mason, Katie L.;
- Huffnagle, Gary B.
Publication type:
Article
The Lung Microbiome during Health and Disease.
Published in:
International Journal of Molecular Sciences, 2021, v. 22, n. 19, p. 10872, doi. 10.3390/ijms221910872
By:
- Yagi, Kazuma;
- Huffnagle, Gary B.;
- Lukacs, Nicholas W.;
- Asai, Nobuhiro
Publication type:
Article
Lactobacillus johnsonii and host communication: insight into modulatory mechanisms during health and disease.
Published in:
Frontiers in Microbiomes, 2024, p. 1, doi. 10.3389/frmbi.2023.1345330
By:
- Arzola-Martínez, Llilian;
- Ravi, Keerthikka;
- Huffnagle, Gary B.;
- Lukacs, Nicholas W.;
- Fonseca, Wendy
Publication type:
Article
A steroid‐resistant cockroach allergen model is associated with lung and cecal microbiome changes.
Published in:
Physiological Reports, 2023, v. 11, n. 13, p. 1, doi. 10.14814/phy2.15761
By:
- Asai, Nobuhiro;
- Ethridge, Alexander D.;
- Fonseca, Wendy;
- Yagi, Kazuma;
- Rasky, Andrew J.;
- Morris, Susan B.;
- Falkowski, Nicole R.;
- Huang, Yvonne J.;
- Huffnagle, Gary B.;
- Lukacs, Nicholas W.
Publication type:
Article
Early-Life Lung and Gut Microbiota Development and Respiratory Syncytial Virus Infection.
Published in:
Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.877771
By:
- Yagi, Kazuma;
- Asai, Nobuhiro;
- Huffnagle, Gary B.;
- Lukacs, Nicholas W.;
- Fonseca, Wendy
Publication type:
Article
Symptom-related sputum microbiota in stable chronic obstructive pulmonary disease.
Published in:
International Journal of COPD, 2018, v. 13, p. 2289, doi. 10.2147/COPD.S167618
By:
- Wenqi Diao;
- Ning Shen;
- Yipeng Du;
- Erb-Downward, John R.;
- Xiaoyan Sun;
- Chenxia Guo;
- Qian Ke;
- Huffnagle, Gary B.;
- Gyetko, Margaret R.;
- Bei He
Publication type:
Article
Increase in dietary fiber dampens allergic responses in the lung.
Published in:
Nature Medicine, 2014, v. 20, n. 2, p. 120, doi. 10.1038/nm.3472
By:
- Huffnagle, Gary B
Publication type:
Article
The microbiome in wound repair and tissue fibrosis.
Published in:
Journal of Pathology, 2013, v. 229, n. 2, p. 323, doi. 10.1002/path.4118
By:
- Scales, Brittan S;
- Huffnagle, Gary B
Publication type:
Article
The role of laccase in prostaglandin production by Cryptococcus neoformans.
Published in:
Molecular Microbiology, 2008, v. 68, n. 6, p. 1428, doi. 10.1111/j.1365-2958.2008.06245.x
By:
- Erb-Downward, John R.;
- Noggle, Rachael M.;
- Williamson, Peter R.;
- Huffnagle, Gary B.
Publication type:
Article
Changes in the Lung Microbiome following Lung Transplantation Include the Emergence of Two Distinct Pseudomonas Species with Distinct Clinical Associations.
Published in:
PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0097214
By:
- Dickson, Robert P.;
- Erb-Downward, John R.;
- Freeman, Christine M.;
- Walker, Natalie;
- Scales, Brittan S.;
- Beck, James M.;
- Martinez, Fernando J.;
- Curtis, Jeffrey L.;
- Lama, Vibha N.;
- Huffnagle, Gary B.
Publication type:
Article
The Systemic Inflammatory Response to Clostridium difficile Infection.
Published in:
PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0092578
By:
- Rao, Krishna;
- Erb-Downward, John R.;
- Walk, Seth T.;
- Micic, Dejan;
- Falkowski, Nicole;
- Santhosh, Kavitha;
- Mogle, Jill A.;
- Ring, Cathrin;
- Young, Vincent B.;
- Huffnagle, Gary B.;
- Aronoff, David M.
Publication type:
Article
Procalcitonin Levels Associate with Severity of Clostridium difficile Infection.
Published in:
PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0058265
By:
- Rao, Krishna;
- Walk, Seth T.;
- Micic, Dejan;
- Chenoweth, Elizabeth;
- Deng, Lili;
- Galecki, Andrzej T.;
- Jain, Ruchika;
- Trivedi, Itishree;
- Yu, Marie;
- Santhosh, Kavitha;
- Ring, Cathrin;
- Young, Vincent B.;
- Huffnagle, Gary B.;
- Aronoff, David M.
Publication type:
Article
Analysis of the Lung Microbiome in the "Healthy" Smoker and in COPD.
Published in:
PLoS ONE, 2011, v. 6, n. 2, p. 1, doi. 10.1371/journal.pone.0016384
By:
- Erb-Downward, John R.;
- Thompson, Deborah L.;
- Han, Meilan K.;
- Freeman, Christine M.;
- McCloskey, Lisa;
- Schmidt, Lindsay A.;
- Young, Vincent B.;
- Toews, Galen B.;
- Curtis, Jeffrey L.;
- Sundaram, Baskaran;
- Martinez, Fernando J.;
- Huffnagle, Gary B.
Publication type:
Article
Toll-Interacting Protein and Altered Lung Microbiota in Idiopathic Pulmonary Fibrosis.
Published in:
2022
By:
- Lipinski, Jay H.;
- Erb-Downward, John R.;
- Huffnagle, Gary B.;
- Martinez, Fernando J.;
- Moore, Bethany B.;
- Dickson, Robert P.;
- Noth, Imre;
- O'Dwyer, David N.;
- Flaherty, Kevin R
Publication type:
Letter
Lung Microbiota Predict Clinical Outcomes in Critically Ill Patients.
Published in:
2020
By:
- Dickson, Robert P.;
- Schultz, Marcus J.;
- van der Poll, Tom;
- Schouten, Laura R.;
- Falkowski, Nicole R.;
- Luth, Jenna E.;
- Sjoding, Michael W.;
- Brown, Christopher A.;
- Chanderraj, Rishi;
- Huffnagle, Gary B.;
- Bos, Lieuwe D. J.;
- Biomarker Analysis in Septic ICU Patients (BASIC) Consortium
Publication type:
journal article
Radiographic Honeycombing and Altered Lung Microbiota in Patients with Idiopathic Pulmonary Fibrosis.
Published in:
2019
By:
- Dickson, Robert P.;
- Huffnagle, Gary B.;
- Flaherty, Kevin R.;
- Martinez, Fernando J.;
- Erb-Downward, John R.;
- Moore, Bethany B.;
- O'Dwyer, David N.;
- White, Eric S
Publication type:
Letter
Lung Microbiota Contribute to Pulmonary Inflammation and Disease Progression in Pulmonary Fibrosis.
Published in:
2019
By:
- O'Dwyer, David N;
- Ashley, Shanna L;
- Gurczynski, Stephen J;
- Xia, Meng;
- Wilke, Carol;
- Falkowski, Nicole R;
- Norman, Katy C;
- Arnold, Kelly B;
- Huffnagle, Gary B;
- Salisbury, Margaret L;
- Han, MeiLan K;
- Flaherty, Kevin R;
- White, Eric S;
- Martinez, Fernando J;
- Erb-Downward, John R;
- Murray, Susan;
- Moore, Bethany B;
- Dickson, Robert P
Publication type:
journal article
Lung Dysbiosis, Inflammation, and Injury in Hematopoietic Cell Transplantation.
Published in:
2018
By:
- O'Dwyer, David N;
- Zhou, Xiaofeng;
- Wilke, Carol A;
- Xia, Meng;
- Falkowski, Nicole R;
- Norman, Katy C;
- Arnold, Kelly B;
- Huffnagle, Gary B;
- Murray, Susan;
- Erb-Downward, John R;
- Yanik, Gregory A;
- Moore, Bethany B;
- Dickson, Robert P
Publication type:
journal article
The Lung Microbiota of Healthy Mice Are Highly Variable, Cluster by Environment, and Reflect Variation in Baseline Lung Innate Immunity.
Published in:
2018
By:
- Dickson, Robert P;
- Erb-Downward, John R;
- Falkowski, Nicole R;
- Hunter, Ellen M;
- Ashley, Shanna L;
- Huffnagle, Gary B
Publication type:
journal article
Bacterial Dissemination to the Brain in Sepsis.
Published in:
2018
By:
- Singer, Benjamin H.;
- Dickson, Robert P.;
- Denstaedt, Scott J.;
- Newstead, Michael W.;
- Kim, Kwi;
- Falkowski, Nicole R.;
- Erb-Downward, John R.;
- Schmidt, Thomas M.;
- Huffnagle, Gary B.;
- Standiford, Theodore J.
Publication type:
journal article
Reply: Clinical Metagenomics for the Diagnosis of Hospital-acquired Infections: Promises and Hurdles.
Published in:
2017
By:
- Pendleton, Kathryn M;
- Erb-Downward, John R;
- Bao, Yuwei;
- Branton, William R;
- Falkowski, Nicole R;
- Newton, Duane W;
- Huffnagle, Gary B;
- Dickson, Robert P
Publication type:
Letter
Clinical Metagenomics for the Diagnosis of Hospital-acquired Infections: Promises and Hurdles.
Published in:
2017
By:
- Emonet, Stéphane;
- Lazarevic, Vladimir;
- Pugin, Jérôme;
- Schrenzel, Jacques;
- Ruppé, Etienne;
- Pendleton, Kathryn M.;
- Erb-Downward, John R.;
- Yuwei Bao;
- Branton, William R.;
- Falkowski, Nicole R.;
- Newton, Duane W.;
- Huffnagle, Gary B.;
- Dickson, Robert P.
Publication type:
Letter
Rapid Pathogen Identification in Bacterial Pneumonia Using Real-Time Metagenomics.
Published in:
2017
By:
- Pendleton, Kathryn M.;
- Erb-Downward, John R.;
- Yuwei Bao;
- Branton, William R.;
- Falkowski, Nicole R.;
- Newton, Duane W.;
- Huffnagle, Gary B.;
- Dickson, Robert P.;
- Bao, Yuwei
Publication type:
Case Study
Microbes Are Associated with Host Innate Immune Response in Idiopathic Pulmonary Fibrosis.
Published in:
2017
By:
- Huang, Yong;
- Ma, Shwu-Fan;
- Espindola, Milena S;
- Vij, Rekha;
- Oldham, Justin M;
- Huffnagle, Gary B;
- Erb-Downward, John R;
- Flaherty, Kevin R;
- Moore, Beth B;
- White, Eric S;
- Zhou, Tong;
- Li, Jianrong;
- Lussier, Yves A;
- Han, MeiLan K;
- Kaminski, Naftali;
- Garcia, Joe G N;
- Hogaboam, Cory M;
- Martinez, Fernando J;
- Noth, Imre;
- COMET-IPF Investigators
Publication type:
journal article
"B" for Bad, Beneficial, or Both? Lung Lymphoid Neogenesis in Chronic Obstructive Pulmonary Disease.
Published in:
2015
By:
- Curtis, Jeffrey L.;
- Freeman, Christine M.;
- Huffnagle, Gary B.
Publication type:
journal article
Host Response to the Lung Microbiome in Chronic Obstructive Pulmonary Disease.
Published in:
2015
By:
- Sze, Marc A;
- Dimitriu, Pedro A;
- Suzuki, Masaru;
- McDonough, John E;
- Campbell, Josh D;
- Brothers, John F;
- Erb-Downward, John R;
- Huffnagle, Gary B;
- Hayashi, Shizu;
- Elliott, W Mark;
- Cooper, Joel;
- Sin, Don D;
- Lenburg, Marc E;
- Spira, Avrum;
- Mohn, William W;
- Hogg, James C
Publication type:
Journal Article
The Host Response to the Lung Microbiome in Chronic Obstructive Pulmonary Disease.
Published in:
American Journal of Respiratory & Critical Care Medicine, 2015, v. 192, n. 4, p. 1, doi. 10.1164/rccm.201502-0223oc
By:
- Sze, Marc A.;
- Dimitriu, Pedro A.;
- Suzuki, Masaru;
- McDonough, John E.;
- Campbell, Josh D.;
- Brothers, John F.;
- Erb-Downward, John R.;
- Huffnagle, Gary B.;
- Shizu Hayashi;
- Elliott, W. Mark;
- Cooper, Joel;
- Sin, Don D.;
- Lenburg, Marc E.;
- Spira, Avrum;
- Mohn, William W.;
- Hogg, James C.
Publication type:
Article
Host Response to the Lung Microbiome in Chronic Obstructive Pulmonary Disease.
Published in:
American Journal of Respiratory & Critical Care Medicine, 2015, v. 192, n. 4, p. 438, doi. 10.1164/rccm.201502-0223OC
By:
- Sze, Marc A.;
- Dimitriu, Pedro A.;
- Suzuki, Masaru;
- McDonough, John E.;
- Campbell, Josh D.;
- Brothers, John F.;
- Erb-Downward, John R.;
- Huffnagle, Gary B.;
- Hayashi, Shizu;
- Elliott, W. Mark;
- Cooper, Joel;
- Sin, Don D.;
- Lenburg, Marc E.;
- Spira, Avrum;
- Mohn, William W.;
- Hogg, James C.
Publication type:
Article
Intraalveolar Catecholamines and the Human Lung Microbiome.
Published in:
American Journal of Respiratory & Critical Care Medicine, 2015, v. 192, n. 2, p. 257, doi. 10.1164/rccm.201502-0326le
By:
- Dickson, Robert P.;
- Erb-Downward, John R.;
- Prescott, Hallie C.;
- Martinez, Fernando J.;
- Curtis, Jeffrey L.;
- Lama, Vibha N.;
- Huffnagle, Gary B.
Publication type:
Article
Comparative genomics of Pseudomonas fluorescens subclade III strains from human lungs.
Published in:
BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2261-2
By:
- Scales, Brittan S.;
- Erb-Downward, John R.;
- Huffnagle, Ian M.;
- LiPuma, John J.;
- Huffnagle, Gary B.
Publication type:
Article
CCR5 provides a signal for microbial induced production of IL-12 by CD8α+ dendritic cells.
Published in:
Nature Immunology, 2000, v. 1, n. 1, p. 83, doi. 10.1038/76957
By:
- Aliberti, Julio;
- Reis e Sousa, Caetano;
- Schito, Marco;
- Hieny, Sara;
- Wells, Timothy;
- Huffnagle, Gary B.;
- Sher, Alan
Publication type:
Article
Thermoneutrality Alters Gastrointestinal Antigen Passage Patterning and Predisposes to Oral Antigen Sensitization in Mice.
Published in:
Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2021.636198
By:
- Noah, Taeko K.;
- Lee, Jee-Boong;
- Brown, Christopher A.;
- Yamani, Amnah;
- Tomar, Sunil;
- Ganesan, Varsha;
- Newberry, Rodney D.;
- Huffnagle, Gary B.;
- Divanovic, Senad;
- Hogan, Simon P.
Publication type:
Article
Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection.
Published in:
Nature Communications, 2014, v. 5, n. 1, p. 3114, doi. 10.1038/ncomms4114
By:
- Theriot, Casey M.;
- Koenigsknecht, Mark J.;
- Carlson, Paul E.;
- Hatton, Gabrielle E.;
- Nelson, Adam M.;
- Li, Bo;
- Huffnagle, Gary B.;
- Z. Li, Jun;
- Young, Vincent B.
Publication type:
Article
Lung and gut microbiota are altered by hyperoxia and contribute to oxygen-induced lung injury in mice.
Published in:
Science Translational Medicine, 2020, v. 12, n. 556, p. 1, doi. 10.1126/scitranslmed.aau9959
By:
- Ashley, Shanna L.;
- Sjoding, Michael W.;
- Popova, Antonia P.;
- Cui, Tracy X.;
- Hoostal, Matthew J.;
- Schmidt, Thomas M.;
- Branton, William R.;
- Dieterle, Michael G.;
- Falkowski, Nicole R.;
- Baker, Jennifer M.;
- Hinkle, Kevin J.;
- Konopka, Kristine E.;
- Erb-Downward, John R.;
- Huffnagle, Gary B.;
- Dickson, Robert P.
Publication type:
Article
Respiratory and Gut Microbiome Modification during Respiratory Syncytial Virus Infection: A Systematic Review.
Published in:
Viruses (1999-4915), 2024, v. 16, n. 2, p. 220, doi. 10.3390/v16020220
By:
- Yagi, Kazuma;
- Lukacs, Nicholas W.;
- Huffnagle, Gary B.;
- Kato, Hideo;
- Asai, Nobuhiro
Publication type:
Article
The Lung Microbiome and Viral-induced Exacerbations of Chronic Obstructive Pulmonary Disease: New Observations, Novel Approaches.
Published in:
American Journal of Respiratory & Critical Care Medicine, 2013, v. 188, n. 10, p. 1185, doi. 10.1164/rccm.201309-1573ED
By:
- DICKSON, ROBERT P.;
- HUANG, YVONNE J.;
- MARTINEZ, FERNANDO J.;
- HUFFNAGLE, GARY B.
Publication type:
Article
The Microbiota in Respiratory Disease.
Published in:
American Journal of Respiratory & Critical Care Medicine, 2012, v. 185, n. 10, p. 1037, doi. 10.1164/rccm.201203-0567ED
By:
- ERB-DOWNWARD, JOHN R.;
- HUFFNAGLE, GARY B.;
- MARTINEZ, FERNANDO J.
Publication type:
Article
Leptin corrects host defense defects after acute starvation in murine pneumococcal pneumonia.
Published in:
2006
By:
- Mancuso P;
- Huffnagle GB;
- Olszewski MA;
- Phipps J;
- Peters-Golden M;
- Mancuso, Peter;
- Huffnagle, Gary B;
- Olszewski, Mihal A;
- Phipps, John;
- Peters-Golden, Marc
Publication type:
journal article
Leptin Corrects Host Defense Defects after Acute Starvation in Murine Pneumococcal Pneumonia.
Published in:
American Journal of Respiratory & Critical Care Medicine, 2006, v. 173, n. 2, p. 212, doi. 10.1164/rccm.200506-909OC
By:
- Mancuso, Peter;
- Huffnagle, Gary B.;
- Olszewski, Mihal A.;
- Phipps, John;
- Peters-Golden, Marc
Publication type:
Article
The Lung Microbiome: New Principles for Respiratory Bacteriology in Health and Disease.
Published in:
PLoS Pathogens, 2015, v. 11, n. 7, p. 1, doi. 10.1371/journal.ppat.1004923
By:
- Dickson, Robert P.;
- Huffnagle, Gary B.
Publication type:
Article
The Microbiota and Allergies/Asthma.
Published in:
2010
By:
- Huffnagle, Gary B.
Publication type:
Question & Answer
Modulation of Post-Antibiotic Bacterial Community Reassembly and Host Response by Candida albicans.
Published in:
Scientific Reports, 2013, p. 1, doi. 10.1038/srep02191
By:
- Erb Downward, John R.;
- Falkowski, Nicole R.;
- Mason, Katie L.;
- Muraglia, Ryan;
- Huffnagle, Gary B.
Publication type:
Article
Role of interferon- γ and inflammatory monocytes in driving colonic inflammation during acute Clostridium difficile infection in mice.
Published in:
Immunology, 2017, v. 150, n. 4, p. 468, doi. 10.1111/imm.12700
By:
- McDermott, Andrew J.;
- Falkowski, Nicole R.;
- McDonald, Roderick A.;
- Frank, Charles R.;
- Pandit, Chinmay R.;
- Young, Vincent B.;
- Huffnagle, Gary B.
Publication type:
Article
Interleukin-23 (IL-23), independent of IL-17 and IL-22, drives neutrophil recruitment and innate inflammation during Clostridium difficile colitis in mice.
Published in:
Immunology, 2016, v. 147, n. 1, p. 114, doi. 10.1111/imm.12545
By:
- McDermott, Andrew J.;
- Falkowski, Nicole R.;
- McDonald, Roderick A.;
- Pandit, Chinmay R.;
- Young, Vincent B.;
- Huffnagle, Gary B.
Publication type:
Article
The role of Gr-1+ cells and tumour necrosis factor- α signalling during Clostridium difficile colitis in mice.
Published in:
Immunology, 2015, v. 144, n. 4, p. 704, doi. 10.1111/imm.12425
By:
- McDermott, Andrew J.;
- Higdon, Kathryn E.;
- Muraglia, Ryan;
- Erb‐Downward, John R.;
- Falkowski, Nicole R.;
- McDonald, Roderick A.;
- Young, Vincent B.;
- Huffnagle, Gary B.
Publication type:
Article
Interleukin-22 and CD160 play additive roles in the host mucosal response to Clostridium difficile infection in mice.
Published in:
Immunology, 2015, v. 144, n. 4, p. 587, doi. 10.1111/imm.12414
By:
- Sadighi Akha, Amir A.;
- McDermott, Andrew J.;
- Theriot, Casey M.;
- Carlson, Paul E.;
- Frank, Charles R.;
- McDonald, Roderick A.;
- Falkowski, Nicole R.;
- Bergin, Ingrid L.;
- Young, Vincent B.;
- Huffnagle, Gary B.
Publication type:
Article
The microbiome and regulation of mucosal immunity.
Published in:
Immunology, 2014, v. 142, n. 1, p. 24, doi. 10.1111/imm.12231
By:
- McDermott, Andrew J.;
- Huffnagle, Gary B.
Publication type:
Article
Acute infection of mice with Clostridium difficile leads to eIF2α phosphorylation and pro-survival signalling as part of the mucosal inflammatory response.
Published in:
Immunology, 2013, v. 140, n. 1, p. 111, doi. 10.1111/imm.12122
By:
- Sadighi Akha, Amir A.;
- Theriot, Casey M.;
- Erb‐Downward, John R.;
- McDermott, Andrew J.;
- Falkowski, Nicole R.;
- Tyra, Heather M.;
- Rutkowski, D. Thomas;
- Young, Vincent B.;
- Huffnagle, Gary B.
Publication type:
Article
Spatial Variation in the Healthy Human Lung Microbiome and the Adapted Island Model of Lung Biogeography.
Published in:
Annals of the American Thoracic Society, 2015, v. 12, n. 6, p. 821, doi. 10.1513/AnnalsATS.201501-029OC
By:
- Dickson, Robert P.;
- Erb-Downward, John R.;
- Freeman, Christine M.;
- McCloskey, Lisa;
- Beck, James M.;
- Huffnagle, Gary B.;
- Curtis, Jeffrey L.
Publication type:
Article

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