Works by Huffman, Anthony

Results: 18

A fourfold pathogen reference ontology suite.

Published in:

Journal of Biomedical Semantics, 2025, v. 16, n. 1, p. 1, doi. 10.1186/s13326-025-00333-6

By:

Beverley, John;
Babcock, Shane;
Benson, Carter;
De Colle, Giacomo;
Cohen, Sydney;
Diehl, Alexander D.;
Challa, Ram A. N. R.;
Mavrovich, Rachel A.;
Billig, Joshua;
Huffman, Anthony;
He, Yongqun

Publication type:

Article

VIGET: A web portal for study of vaccine-induced host responses based on Reactome pathways and ImmPort data.

Published in:

Frontiers in Immunology, 2023, p. 1, doi. 10.3389/fimmu.2023.1141030

By:

Brunson, Timothy;
Sanati, Nasim;
Huffman, Anthony;
Maria Masci, Anna;
Jie Zheng;
Cooke, Michael F.;
Conley, Patrick;
Yongqun He;
Guanming Wu

Publication type:

Article

VIGET: A web portal for study of vaccine-induced host responses based on Reactome pathways and ImmPort data.

Published in:

Frontiers in Immunology, 2023, v. 14, p. 1, doi. 10.3389/fimmu.2023.1141030

By:

Brunson, Timothy;
Sanati, Nasim;
Huffman, Anthony;
Masci, Anna Maria;
Jie Zheng;
Cooke, Michael F.;
Conley, Patrick;
Yongqun He;
Guanming Wu

Publication type:

Article

Maureen O'Leary's Record.

Published in:

Brooklyn Rail, 2021, p. N.PAG

By:

Huffman, Anthony

Publication type:

Article

COVID-19 vaccine design using reverse and structural vaccinology, ontology-based literature mining and machine learning.

Published in:

Briefings in Bioinformatics, 2022, v. 23, n. 4, p. 1, doi. 10.1093/bib/bbac190

By:

Huffman, Anthony;
Ong, Edison;
Hur, Junguk;
D'Mello, Adonis;
Tettelin, Hervé;
He, Yongqun

Publication type:

Article

Dietary cinnamon promotes longevity and extends healthspan via mTORC1 and autophagy signaling.

Published in:

Aging Cell, 2025, v. 24, n. 4, p. 1, doi. 10.1111/acel.14448

By:

Guo, Yuling;
Zhang, Qing;
Zhang, Bi;
Pan, Tong;
Ronan, Elizabeth A.;
Huffman, Anthony;
He, Yongqun;
Inoki, Ken;
Liu, Jianfeng;
Xu, X.Z. Shawn

Publication type:

Article

Mondrian's Neo-Plasticism, Troisgros's Nouvelle Cuisine, and the Shifting Spirit of Modernism.

Published in:

Food Studies: An Interdisciplinary Journal, 2025, v. 15, n. 1, p. 67, doi. 10.18848/2160-1933/CGP/v15i01/67-84

By:

Huffman, Anthony M.

Publication type:

Article

Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis.

Published in:

Journal of Biomedical Semantics, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13326-024-00312-3

By:

Zheng, Jie;
Li, Xingxian;
Masci, Anna Maria;
Kahn, Hayleigh;
Huffman, Anthony;
Asfaw, Eliyas;
Pan, Yuanyi;
Guo, Jinjing;
He, Virginia;
Song, Justin;
Seleznev, Andrey I.;
Lin, Asiyah Yu;
He, Yongqun

Publication type:

Article

Ontological representation, modeling, and analysis of parasite vaccines.

Published in:

Journal of Biomedical Semantics, 2024, v. 15, p. 1, doi. 10.1186/s13326-024-00307-0

By:

Huffman, Anthony;
Zhang, Xumeng;
Lanka, Meghana;
Zheng, Jie;
Masci, Anna Maria;
He, Yongqun

Publication type:

Article

A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00279-z

By:

He, Yongqun;
Yu, Hong;
Huffman, Anthony;
Lin, Asiyah Yu;
Natale, Darren A.;
Beverley, John;
Zheng, Ling;
Perl, Yehoshua;
Wang, Zhigang;
Liu, Yingtong;
Ong, Edison;
Wang, Yang;
Huang, Philip;
Tran, Long;
Du, Jinyang;
Shah, Zalan;
Shah, Easheta;
Desai, Roshan;
Huang, Hsin-hui;
Tian, Yujia

Publication type:

Article

CIDO ontology updates and secondary analysis of host responses to COVID-19 infection based on ImmPort reports and literature.

Published in:

Journal of Biomedical Semantics, 2021, v. 12, n. 1, p. 1, doi. 10.1186/s13326-021-00250-4

By:

Huffman, Anthony;
Masci, Anna Maria;
Zheng, Jie;
Sanati, Nasim;
Brunson, Timothy;
Wu, Guanming;
He, Yongqun

Publication type:

Article

VaximmutorDB: A Web-Based Vaccine Immune Factor Database and Its Application for Understanding Vaccine-Induced Immune Mechanisms.

Published in:

Frontiers in Immunology, 2021, v. 11, p. N.PAG, doi. 10.3389/fimmu.2021.639491

By:

Berke, Kimberly;
Sun, Peter;
Ong, Edison;
Sanati, Nasim;
Huffman, Anthony;
Brunson, Timothy;
Loney, Fred;
Ostrow, Joseph;
Racz, Rebecca;
Zhao, Bin;
Xiang, Zuoshuang;
Masci, Anna Maria;
Zheng, Jie;
Wu, Guanming;
He, Yongqun

Publication type:

Article

Systematic collection, annotation, and pattern analysis of viral vaccines in the VIOLIN vaccine knowledgebase.

Published in:

Frontiers in Cellular & Infection Microbiology, 2025, p. 1, doi. 10.3389/fcimb.2025.1509226

By:

Huffman, Anthony;
Gautam, Mehul;
Gandhi, Arya;
Du, Priscilla;
Austin, Lauren;
Roan, Kallan;
Zheng, Jie;
He, Yongqun

Publication type:

Article

Vaxign2: the second generation of the first Web-based vaccine design program using reverse vaccinology and machine learning.

Published in:

Nucleic Acids Research, 2021, v. 49, n. W1, p. W671, doi. 10.1093/nar/gkab279

By:

Ong, Edison;
Cooke, Michael F;
Huffman, Anthony;
Xiang, Zuoshuang;
Wong, Mei U;
Wang, Haihe;
Seetharaman, Meenakshi;
Valdez, Ninotchka;
He, Yongqun

Publication type:

Article

CanVaxKB: a web-based cancer vaccine knowledgebase.

Published in:

NAR Cancer, 2024, v. 6, n. 1, p. 1, doi. 10.1093/narcan/zcad060

By:

Asfaw, Eliyas;
Lin, Asiyah Yu;
Huffman, Anthony;
Li, Siqi;
George, Madison;
Darancou, Chloe;
Kalter, Madison;
Wehbi, Nader;
Bartels, Davis;
Fleck, Elyse;
Tran, Nancy;
Faghihnia, Daniel;
Berke, Kimberly;
Sutariya, Ronak;
Reyal, Farah;
Tammam, Youssef;
Zhao, Bin;
Ong, Edison;
Xiang, Zuoshuang;
He, Virginia

Publication type:

Article

CIDO, a community-based ontology for coronavirus disease knowledge and data integration, sharing, and analysis.

Published in:

Scientific Data, 2020, v. 7, n. 1, p. 1, doi. 10.1038/s41597-020-0523-6

By:

He, Yongqun;
Yu, Hong;
Ong, Edison;
Wang, Yang;
Liu, Yingtong;
Huffman, Anthony;
Huang, Hsin-hui;
Beverley, John;
Hur, Junguk;
Yang, Xiaolin;
Chen, Luonan;
Omenn, Gilbert S.;
Athey, Brian;
Smith, Barry

Publication type:

Article

COVID-19 Coronavirus Vaccine Design Using Reverse Vaccinology and Machine Learning.

Published in:

Frontiers in Immunology, 2020, v. 11, p. 1, doi. 10.3389/fimmu.2020.01581

By:

Ong, Edison;
Wong, Mei U;
Huffman, Anthony;
He, Yongqun

Publication type:

Article

A new framework for hostpathogen interaction research.

Published in:

Frontiers in Immunology, 2022, v. 13, p. 1, doi. 10.3389/fimmu.2022.1066733

By:

Hong Yu;
Li Li;
Huffman, Anthony;
Beverley, John;
Hur, Junguk;
Merrell, Eric;
Hsin-hui Huang;
Yang Wang;
Yingtong Liu;
Ong, Edison;
Liang Cheng;
Tao Zeng;
Jingsong Zhang;
Pengpai Li;
Zhiping Liu;
Zhigang Wang;
Xiangyan Zhang;
Xianwei Ye;
Handelman, Samuel K.;
Sexton, Jonathan

Publication type:

Article