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Specifications of standards in systems and synthetic biology: status and developments in 2022 and the COMBINE meeting 2022.
- Published in:
- Journal of Integrative Bioinformatics, 2023, v. 20, n. 1, p. 1, doi. 10.1515/jib-2023-0004
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- Publication type:
- Article
Specifications of standards in systems and synthetic biology: status and developments in 2021.
- Published in:
- 2021
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- Publication type:
- Editorial
Specifications of standards in systems and synthetic biology: status and developments in 2020.
- Published in:
- Journal of Integrative Bioinformatics, 2020, v. 17, n. 2/3, p. 1, doi. 10.1515/jib-2020-0022
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- Publication type:
- Article
Systems Biology Markup Language (SBML) Level 3 Package: Distributions, Version 1, Release 1.
- Published in:
- Journal of Integrative Bioinformatics, 2020, v. 17, n. 2/3, p. 1, doi. 10.1515/jib-2020-0018
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- Publication type:
- Article
The first 10 years of the international coordination network for standards in systems and synthetic biology (COMBINE).
- Published in:
- Journal of Integrative Bioinformatics, 2020, v. 17, n. 2/3, p. 1, doi. 10.1515/jib-2020-0005
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- Publication type:
- Article
Systems biology markup language (SBML) level 3 package: multistate, multicomponent and multicompartment species, version 1, release 2.
- Published in:
- Journal of Integrative Bioinformatics, 2020, v. 17, n. 2/3, p. 1, doi. 10.1515/jib-2020-0015
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- Publication type:
- Article
The Systems Biology Markup Language (SBML): Language Specification for Level 3 Version 2 Core Release 2.
- Published in:
- Journal of Integrative Bioinformatics, 2019, v. 16, n. 2, p. 1, doi. 10.1515/jib-2019-0021
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- Publication type:
- Article
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019.
- Published in:
- Journal of Integrative Bioinformatics, 2019, v. 16, n. 2, p. 1, doi. 10.1515/jib-2019-0035
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- Publication type:
- Article
Harmonizing semantic annotations for computational models in biology.
- Published in:
- Briefings in Bioinformatics, 2019, v. 20, n. 2, p. 540, doi. 10.1093/bib/bby087
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- Publication type:
- Article
Correction to: Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE).
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- 2018
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- Publication type:
- Correction Notice
SBMLPkgSpec: a LaTeX style file for SBML package specification documents.
- Published in:
- BMC Research Notes, 2017, v. 10, n. 1, p. 1, doi. 10.1186/s13104-017-2788-1
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- Publication type:
- Article
MOCCASIN: converting MATLAB ODE models to SBML.
- Published in:
- Bioinformatics, 2016, v. 32, n. 12, p. 1905, doi. 10.1093/bioinformatics/btw056
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- Publication type:
- Article
Do genome-scale models need exact solvers or clearer standards?
- Published in:
- 2015
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- Publication type:
- Letter to the Editor
BioModels: ten-year anniversary.
- Published in:
- Nucleic Acids Research, 2015, v. 43, n. D1, p. D542, doi. 10.1093/nar/gku1181
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- Publication type:
- Article
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 61, doi. 10.1186/s12859-014-0369-z
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- Publication type:
- Article
Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE).
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- Standards in Genomic Sciences, 2014, v. 9, n. 3, p. 1285, doi. 10.4056/sigs.5279417
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- Publication type:
- Article
Path2Models: large-scale generation of computational models from biochemical pathway maps.
- Published in:
- BMC Systems Biology, 2013, v. 7, n. 1, p. 3, doi. 10.1186/1752-0509-7-116
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- Publication type:
- Article
A community-driven global reconstruction of human metabolism.
- Published in:
- Nature Biotechnology, 2013, v. 31, n. 5, p. 419, doi. 10.1038/nbt.2488
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- Publication type:
- Article
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools.
- Published in:
- BMC Systems Biology, 2013, v. 7, n. 1, p. 3, doi. 10.1186/1752-0509-7-135
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- Publication type:
- Article
JSBML: a flexible Java library for working with SBML.
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- Bioinformatics, 2011, v. 27, n. 15, p. 2167, doi. 10.1093/bioinformatics/btr361
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- Publication type:
- Article
Minimum Information About a Simulation Experiment (MIASE).
- Published in:
- PLoS Computational Biology, 2011, v. 7, n. 4, p. 1, doi. 10.1371/journal.pcbi.1001122
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- Publication type:
- Article
Software that goes with the flow in systems biology.
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- BMC Biology, 2010, v. 8, p. 140, doi. 10.1186/1741-7007-8-140
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- Publication type:
- Article
BioModels Database: An enhanced, curated andannotated resource for published quantitativekinetic models.
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- BMC Systems Biology, 2010, v. 4, p. 92, doi. 10.1186/1752-0509-4-92
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- Publication type:
- Article
Erratum: The Systems Biology Graphical Notation.
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- 2009
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- Publication type:
- Correction notice
The Systems Biology Graphical Notation.
- Published in:
- Nature Biotechnology, 2009, v. 27, n. 8, p. 735, doi. 10.1038/nbt.1558
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- Publication type:
- Article
SBML2LATEX: Conversion of SBML files into human-readable reports.
- Published in:
- Bioinformatics, 2009, v. 25, n. 11, p. 1455, doi. 10.1093/bioinformatics/btp170
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- Publication type:
- Article
A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology.
- Published in:
- Nature Biotechnology, 2008, v. 26, n. 10, p. 1155, doi. 10.1038/nbt1492
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- Publication type:
- Article
LibSBML: an API Library for SBML.
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- Bioinformatics, 2008, v. 24, n. 6, p. 880
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- Publication type:
- Article
SBMLToolbox: an SBML toolbox for MATLAB users.
- Published in:
- Bioinformatics, 2006, v. 22, n. 10, p. 1275, doi. 10.1093/bioinformatics/btl111
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- Publication type:
- Article
CellML2SBML: conversion of CellML into SBML.
- Published in:
- Bioinformatics, 2006, v. 22, n. 8, p. 1018, doi. 10.1093/bioinformatics/btl047
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- Publication type:
- Article
BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d689, doi. 10.1093/nar/gkj092
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- Publication type:
- Article
Escalating model sizes and complexities call for standardized forms of representation.
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- Molecular Systems Biology, 2005, v. 1, n. 1, p. E1, doi. 10.1038/msb4100015
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- Publication type:
- Article
Minimum information requested in the annotation of biochemical models (MIRIAM).
- Published in:
- Nature Biotechnology, 2005, v. 23, n. 12, p. 1509, doi. 10.1038/nbt1156
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- Publication type:
- Article
MathSBML: a package for manipulating SBML-based biological models.
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- Bioinformatics, 2004, v. 20, n. 16, p. 2829, doi. 10.1093/bioinformatics/bth271
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- Publication type:
- Article
Hebb's accomplishments misunderstood.
- Published in:
- Behavioral & Brain Sciences, 1995, v. 18, n. 4, p. 635, doi. 10.1017/S0140525X00040267
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- Publication type:
- Article