Works by Howe, Adina

Results: 36

Changes on the intestinal bacterial community of white shrimp Penaeus vannamei fed with green seaweeds.

Published in:

Journal of Applied Phycology, 2020, v. 32, n. 3, p. 2061, doi. 10.1007/s10811-020-02072-w

By:

Elizondo-González, Regina;
Quiroz-Guzmán, Eduardo;
Howe, Adina;
Yang, Fan;
Flater, Jared;
Gemin, Maxence;
Palacios, Elena;
Peña-Rodríguez, Alberto

Publication type:

Article

Diversity of Antibiotic Resistance genes and Transfer Elements-Quantitative Monitoring (DARTE-QM): a method for detection of antimicrobial resistance in environmental samples.

Published in:

Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-03155-9

By:

Smith, Schuyler D.;
Choi, Jinlyung;
Ricker, Nicole;
Yang, Fan;
Hinsa-Leasure, Shannon;
Soupir, Michelle L.;
Allen, Heather K.;
Howe, Adina

Publication type:

Article

Comparison of antibiotic resistance genes in swine manure storage pits of Iowa, USA.

Published in:

Frontiers in Antibiotics, 2023, v. 2, p. 1, doi. 10.3389/frabi.2023.1116785

By:

Neher, Timothy P.;
Soupir, Michelle L.;
Andersen, Daniel S.;
O'Neill, Maggie L.;
Howe, Adina

Publication type:

Article

Microbiome differences in sugarcane and metabolically engineered oilcane accessions and their implications for bioenergy production.

Published in:

Biotechnology for Biofuels & Bioproducts, 2023, v. 16, n. 1, p. 1, doi. 10.1186/s13068-023-02302-6

By:

Yang, Jihoon;
Sooksa-nguan, Thanwalee;
Kannan, Baskaran;
Cano-Alfanar, Sofia;
Liu, Hui;
Kent, Angela;
Shanklin, John;
Altpeter, Fredy;
Howe, Adina

Publication type:

Article

These Are Not the K-mers You Are Looking For: Efficient Online K-mer Counting Using a Probabilistic Data Structure.

Published in:

PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0101271

By:

Zhang, Qingpeng;
Pell, Jason;
Canino-Koning, Rosangela;
Howe, Adina Chuang;
Brown, C. Titus

Publication type:

Article

Impact of flow on woodchip properties and subsidence in denitrifying bioreactors.

Published in:

Agrosystems, Geosciences & Environment, 2021, v. 4, n. 1, p. 1, doi. 10.1002/agg2.20149

By:

Schaefer, Abby;
Werning, Kyle;
Hoover, Natasha;
Tschirner, Ulrike;
Feyereisen, Gary;
Moorman, Thomas B.;
Howe, Adina C.;
Soupir, Michelle L.

Publication type:

Article

Prairie strips' effect on transport of antimicrobial resistance indicators in poultry litter.

Published in:

Journal of Environmental Quality, 2022, v. 51, n. 2, p. 260, doi. 10.1002/jeq2.20333

By:

Flater, Jared S.;
Alt, Laura M.;
Soupir, Michelle;
Moorman, Thomas B.;
Howe, Adina

Publication type:

Article

Comparison of microbial communities in replicated woodchip bioreactors.

Published in:

Journal of Environmental Quality, 2022, v. 51, n. 2, p. 205, doi. 10.1002/jeq2.20320

By:

Schaefer, Abby;
Lee, Jaejin;
Soupir, Michelle L.;
Moorman, Thomas B.;
Howe, Adina

Publication type:

Article

Denitrifying bioreactor microbiome: Understanding pollution swapping and potential for improved performance.

Published in:

Journal of Environmental Quality, 2022, v. 51, n. 1, p. 1, doi. 10.1002/jeq2.20302

By:

Hartfiel, Lindsey M.;
Schaefer, Abby;
Howe, Adina C.;
Soupir, Michelle L.

Publication type:

Article

Antimicrobial resistance in integrated agroecosystems: State of the science and future opportunities.

Published in:

Journal of Environmental Quality, 2021, v. 50, n. 6, p. 1255, doi. 10.1002/jeq2.20289

By:

Howe, Adina C.;
Soupir, Michelle L.

Publication type:

Article

Antibiotic resistance gene dissipation in soil microcosms amended with antibiotics and swine manure.

Published in:

Journal of Environmental Quality, 2021, v. 50, n. 4, p. 911, doi. 10.1002/jeq2.20240

By:

Alt, Laura M.;
Iverson, Alyssa N.;
Soupir, Michelle L.;
Moorman, Thomas B.;
Howe, Adina

Publication type:

Article

Land-Use System and Forest Floor Explain Prokaryotic Metacommunity Structuring and Spatial Turnover in Amazonian Forest-to-Pasture Conversion Areas.

Published in:

Frontiers in Microbiology, 2021, v. 11, p. N.PAG, doi. 10.3389/fmicb.2021.657508

By:

Rocha, Fernando Igne;
Ribeiro, Thiago Gonçalves;
Fontes, Marcelo Antoniol;
Schwab, Stefan;
Coelho, Marcia Reed Rodrigues;
Lumbreras, José Francisco;
da Motta, Paulo Emílio Ferreira;
Teixeira, Wenceslau Geraldes;
Cole, James;
Borsanelli, Ana Carolina;
Dutra, Iveraldo dos Santos;
Howe, Adina;
de Oliveira, Aline Pacobahyba;
Jesus, Ederson da Conceição

Publication type:

Article

Microbial activity in forest soil reflects the changes in ecosystem properties between summer and winter.

Published in:

Environmental Microbiology, 2016, v. 18, n. 1, p. 288, doi. 10.1111/1462-2920.13026

By:

Žifčáková, Lucia;
Větrovský, Tomáš;
Howe, Adina;
Baldrian, Petr

Publication type:

Article

Contrasting geochemical and fungal controls on decomposition of lignin and soil carbon at continental scale.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37862-6

By:

Huang, Wenjuan;
Yu, Wenjuan;
Yi, Bo;
Raman, Erik;
Yang, Jihoon;
Hammel, Kenneth E.;
Timokhin, Vitaliy I.;
Lu, Chaoqun;
Howe, Adina;
Weintraub-Leff, Samantha R.;
Hall, Steven J.

Publication type:

Article

Seasonal activities of the phyllosphere microbiome of perennial crops.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-36515-y

By:

Howe, Adina;
Stopnisek, Nejc;
Dooley, Shane K.;
Yang, Fan;
Grady, Keara L.;
Shade, Ashley

Publication type:

Article

Strategies to improve reference databases for soil microbiomes.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2017, v. 11, n. 4, p. 829, doi. 10.1038/ismej.2016.168

By:

Choi, Jinlyung;
Yang, Fan;
Stepanauskas, Ramunas;
Cardenas, Erick;
Garoutte, Aaron;
Williams, Ryan;
Flater, Jared;
Tiedje, James M;
Hofmockel, Kirsten S;
Gelder, Brian;
Howe, Adina

Publication type:

Article

Divergent responses of viral and bacterial communities in the gut microbiome to dietary disturbances in mice.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2016, v. 10, n. 5, p. 1217, doi. 10.1038/ismej.2015.183

By:

Howe, Adina;
Ringus, Daina L;
Williams, Ryan J;
Choo, Zi-Ning;
Greenwald, Stephanie M;
Owens, Sarah M;
Coleman, Maureen L;
Meyer, Folker;
Chang, Eugene B

Publication type:

Article

Identification of the Core Set of Carbon-Associated Genes in a Bioenergy Grassland Soil.

Published in:

PLoS ONE, 2016, v. 11, n. 11, p. 1, doi. 10.1371/journal.pone.0166578

By:

Howe, Adina;
Yang, Fan;
Williams, Ryan J.;
Meyer, Folker;
Hofmockel, Kirsten S.

Publication type:

Article

Complexities in understanding antimicrobial resistance across domesticated animal, human, and environmental systems.

Published in:

Annals of the New York Academy of Sciences, 2019, v. 1441, n. 1, p. 17, doi. 10.1111/nyas.14036

By:

Graham, David W.;
Bergeron, Gilles;
Bourassa, Megan W.;
Dickson, James;
Gomes, Filomena;
Howe, Adina;
Kahn, Laura H.;
Morley, Paul S.;
Scott, H. Morgan;
Simjee, Shabbir;
Singer, Randall S.;
Smith, Tara C.;
Storrs, Carina;
Wittum, Thomas E.

Publication type:

Article

Bacteria in Honeybee Crops Are Decoupled from Those in Floral Nectar and Bee Mouths.

Published in:

Microbial Ecology, 2025, v. 88, n. 1, p. 1, doi. 10.1007/s00248-025-02544-x

By:

Warren, Magdalena L.;
Tsuji, Kaoru;
Decker, Leslie E.;
Kishi, Manabu;
Yang, Jihoon;
Howe, Adina C.;
Fukami, Tadashi

Publication type:

Article

Chemical attributes, bacterial community, and antibiotic resistance genes are affected by intensive use of soil in agro-ecosystems of the Atlantic Forest, Southeastern Brazil.

Published in:

Environmental Geochemistry & Health, 2024, v. 46, n. 4, p. 1, doi. 10.1007/s10653-024-01894-8

By:

Ferreira, Paula Fernanda Alves;
Rocha, Fernando Igne;
Howe, Adina;
Barbosa, Daniele Rodrigues;
da Conceição Jesus, Ederson;
do Amaral Sobrinho, Nelson Moura Brasil;
da Silva Coelho, Irene

Publication type:

Article

Anthropogenic N Deposition Slows Decay by Favoring Bacterial Metabolism: Insights from Metagenomic Analyses.

Published in:

Frontiers in Microbiology, 2016, p. 1, doi. 10.3389/fmicb.2016.00259

By:

Freedman, Zachary B.;
Upchurch, Rima A.;
Zak, Donald R.;
Cline, Lauren C.;
Ramirez, Kelly Sierra;
Howe, Adina

Publication type:

Article

Demonstrating Microbial Co-occurrence Pattern Analyses Within and Between Ecosystems.

Published in:

Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00358

By:

Williams, Ryan J.;
Howe, Adina;
Hofmockel, Kirsten S.

Publication type:

Article

Impact of Swine and Cattle Manure Treatment on the Microbial Composition and Resistome of Soil and Drainage Water.

Published in:

Microorganisms, 2023, v. 11, n. 1, p. 17, doi. 10.3390/microorganisms11010017

By:

Colgan, Phil;
Rieke, Elizabeth L.;
Nadeem, Khurram;
Moorman, Thomas B.;
Soupir, Michelle L.;
Howe, Adina;
Ricker, Nicole

Publication type:

Article

Identification of Soil Microbes Capable of Utilizing Cellobiosan.

Published in:

PLoS ONE, 2016, v. 11, n. 2, p. 1, doi. 10.1371/journal.pone.0149336

By:

Lian, Jieni;
Choi, Jinlyung;
Tan, Yee Shiean;
Howe, Adina;
Wen, Zhiyou;
Jarboe, Laura R.

Publication type:

Article

Feed in summer, rest in winter: microbial carbon utilization in forest topsoil.

Published in:

Microbiome, 2017, v. 5, p. 1, doi. 10.1186/s40168-017-0340-0

By:

Žifčáková, Lucia;
Větrovský, Tomáš;
Lombard, Vincent;
Henrissat, Bernard;
Howe, Adina;
Baldrian, Petr

Publication type:

Article

Allelic Variation in Outer Membrane Protein A and Its Influence on Attachment of Escherichia coli to Corn Stover.

Published in:

Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00708

By:

Chunyu Liao;
Xiao Liang;
Fan Yang;
Soupir, Michelle L.;
Howe, Adina C.;
Thompson, Michael L.;
Jarboe, Laura R.

Publication type:

Article

The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus.

Published in:

Genome Biology, 2013, v. 14, n. 8, p. R89, doi. 10.1186/gb-2013-14-8-r89

By:

Schwarz, Erich M;
Korhonen, Pasi K;
Campbell, Bronwyn E;
Young, Neil D;
Jex, Aaron R;
Jabbar, Abdul;
Hall, Ross S;
Mondal, Alinda;
Howe, Adina C;
Pell, Jason;
Hofmann, Andreas;
Boag, Peter R;
Xing-Quan Zhu;
Gregory, T Ryan;
Loukas, Alex;
Williams, Brian A;
Antoshechkin, Igor;
Brown, C Titus;
Sternberg, Paul W;
Gasser, Robin B

Publication type:

Article

Catchment-scale export of antibiotic resistance genes and bacteria from an agricultural watershed in central Iowa.

Published in:

PLoS ONE, 2020, v. 15, n. 1, p. 1, doi. 10.1371/journal.pone.0227136

By:

Neher, Timothy P.;
Ma, Lanying;
Moorman, Thomas B.;
Howe, Adina C.;
Soupir, Michelle L.

Publication type:

Article

Investigating the dispersal of antibiotic resistance associated genes from manure application to soil and drainage waters in simulated agricultural farmland systems.

Published in:

PLoS ONE, 2019, v. 14, n. 9, p. 1, doi. 10.1371/journal.pone.0222470

By:

Smith, Schuyler D.;
Colgan, Phillip;
Yang, Fan;
Rieke, Elizabeth L.;
Soupir, Michelle L.;
Moorman, Thomas B.;
Allen, Heather K.;
Howe, Adina

Publication type:

Article

Characterizing the soil microbiome and quantifying antibiotic resistance gene dynamics in agricultural soil following swine CAFO manure application.

Published in:

PLoS ONE, 2019, v. 14, n. 8, p. 1, doi. 10.1371/journal.pone.0220770

By:

Lopatto, Edward;
Choi, Jinlyung;
Colina, Alfredo;
Ma, Lanying;
Howe, Adina;
Hinsa-Leasure, Shannon

Publication type:

Article

Transport of Antibiotics, Antibiotic Resistant Bacteria, and Antibiotic Resistance Genes Through Prairie Strips During Simulated Runoff.

Published in:

Journal of Natural Resources & Agricultural Ecosystems, 2024, v. 2, n. 4, p. 167, doi. 10.13031/jnrae.15611

By:

Alt, Laura M.;
Craig, Andrew J.;
Congilosi, Jena L.;
Aga, Diana S.;
Howe, Adina;
Soupir, Michelle L.

Publication type:

Article

Resolving the influence of lignin on soil organic matter decomposition with mechanistic models and continental‐scale data.

Published in:

Global Change Biology, 2023, v. 29, n. 20, p. 5968, doi. 10.1111/gcb.16875

By:

Yi, Bo;
Lu, Chaoqun;
Huang, Wenjuan;
Yu, Wenjuan;
Yang, Jihoon;
Howe, Adina;
Weintraub‐Leff, Samantha R.;
Hall, Steven J.

Publication type:

Article

Impacts of Legacy and Contemporary Nitrogen Inputs on N<sub>2</sub>O and CO<sub>2</sub> Emissions in Miscanthus and Maize Cultivated Soils.

Published in:

GCB Bioenergy, 2025, v. 17, n. 2, p. 1, doi. 10.1111/gcbb.70018

By:

Lee, Jaejin;
Villanueva, Paul;
Glanville, Kate;
Vanloocke, Andy;
Yang, Wendy H.;
Kent, Angela;
McDaniel, Marshall;
Hall, Steven J.;
Howe, Adina

Publication type:

Article

Soil net nitrogen mineralization and leaching under Miscanthus × giganteus and Zea mays.

Published in:

GCB Bioenergy, 2021, v. 13, n. 9, p. 1545, doi. 10.1111/gcbb.12875

By:

Studt, Jacob E.;
McDaniel, Marshall D.;
Tejera, Mauricio D.;
VanLoocke, Andrew;
Howe, Adina;
Heaton, Emily A.

Publication type:

Article

Microbial assemblages and methanogenesis pathways impact methane production and foaming in manure deep-pit storages.

Published in:

PLoS ONE, 2021, v. 16, n. 8, p. 1, doi. 10.1371/journal.pone.0254730

By:

Yang, Fan;
Andersen, Daniel S.;
Trabue, Steven;
Kent, Angela D.;
Pepple, Laura M.;
Gates, Richard S.;
Howe, Adina S.

Publication type:

Article