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TileMap: create chromosomal map of tiling array hybridizations.
- Published in:
- Bioinformatics, 2005, v. 21, n. 18, p. 3629
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- Publication type:
- Article
A novel DNA sequence motif in human and mouse genomes.
- Published in:
- Scientific Reports, 2015, p. 10444, doi. 10.1038/srep10444
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- Publication type:
- Article
Author Correction: Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST.
- Published in:
- 2023
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- Publication type:
- Correction Notice
Single-cell allele-specific expression analysis reveals dynamic and cell-type-specific regulatory effects.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42016-9
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- Publication type:
- Article
Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-35947-w
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- Publication type:
- Article
Probabilistic embedding, clustering, and alignment for integrating spatial transcriptomics data with PRECAST.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-35947-w
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- Publication type:
- Article
Differential Cytokine Signatures of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) and Influenza Infection Highlight Key Differences in Pathobiology.
- Published in:
- Clinical Infectious Diseases, 2022, v. 74, n. 2, p. 254, doi. 10.1093/cid/ciab376
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- Publication type:
- Article
Emergency Myelopoiesis Distinguishes Multisystem Inflammatory Syndrome in Children From Pediatric Severe Coronavirus Disease 2019.
- Published in:
- Journal of Infectious Diseases, 2024, v. 230, n. 2, p. e305, doi. 10.1093/infdis/jiae032
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- Publication type:
- Article
Distinct Cytokine and Chemokine Dysregulation in Hospitalized Children with Acute COVID-19 and Multisystem Inflammatory Syndrome with Similar Levels of Nasopharyngeal SARS-CoV-2 Shedding.
- Published in:
- 2021
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- Publication type:
- journal article
iASeq: integrative analysis of allele-specificity of protein-DNA interactions in multiple ChIP-seq datasets.
- Published in:
- BMC Genomics, 2012, v. 13, n. 1, p. 1, doi. 10.1186/1471-2164-13-681
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- Publication type:
- Article
Computational Prediction of the Global Functional Genomic Landscape: Applications, Methods, and Challenges.
- Published in:
- Human Heredity, 2017, v. 81, n. 2, p. 88, doi. 10.1159/000450827
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- Publication type:
- Article
Prenatal exposure to mercury and precocious puberty: a prospective birth cohort study.
- Published in:
- 2021
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- Publication type:
- journal article
63438 Differential chromatin accessibility at dorsal root ganglia enhancers is associated with nerve injury.
- Published in:
- 2021
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- Publication type:
- Abstract
Early Life Weight Gain and Development of Childhood Asthma in a Prospective Birth Cohort.
- Published in:
- 2018
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- Publication type:
- journal article
DNA methylation entropy is associated with DNA sequence features and developmental epigenetic divergence.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. 5, p. 2046, doi. 10.1093/nar/gkad050
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- Publication type:
- Article
Genome-wide prediction of DNase I hypersensitivity using gene expression.
- Published in:
- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01188-x
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- Publication type:
- Article
Genome-wide approach identifies a novel gene-maternal pre-pregnancy BMI interaction on preterm birth.
- Published in:
- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/ncomms15608
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- Publication type:
- Article
A systematic evaluation of single-cell RNA-sequencing imputation methods.
- Published in:
- Genome Biology, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s13059-020-02132-x
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- Publication type:
- Article
Single-cell ATAC-seq signal extraction and enhancement with SCATE.
- Published in:
- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02075-3
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- Publication type:
- Article
Regional Gene Expression in the Retina, Optic Nerve Head, and Optic Nerve of Mice with Optic Nerve Crush and Experimental Glaucoma.
- Published in:
- International Journal of Molecular Sciences, 2023, v. 24, n. 18, p. 13719, doi. 10.3390/ijms241813719
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- Publication type:
- Article
Postpartum plasma metabolomic profile among women with preeclampsia and preterm delivery: implications for long-term health.
- Published in:
- 2020
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- Publication type:
- journal article
ChIPXpress: using publicly available gene expression data to improve ChIP-seq and ChIP-chip target gene ranking.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-188
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- Publication type:
- Article
Gene set bagging for estimating the probability a statistically significant result will replicate.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-360
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- Publication type:
- Article
Identification of Regulatory Elements in Primary Sensory Neurons Involved in Trauma-Induced Neuropathic Pain.
- Published in:
- Molecular Neurobiology, 2024, v. 61, n. 3, p. 1845, doi. 10.1007/s12035-023-03673-5
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- Publication type:
- Article
Transcriptional outcomes and kinetic patterning of gene expression in response to NF-κB activation.
- Published in:
- PLoS Biology, 2018, v. 16, n. 9, p. 1, doi. 10.1371/journal.pbio.2006347
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- Publication type:
- Article
Joint analysis of differential gene expression in multiple studies using correlation motifs.
- Published in:
- Biostatistics, 2015, v. 16, n. 1, p. 31, doi. 10.1093/biostatistics/kxu038
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- Publication type:
- Article
Reconstruction of Single-Cell Trajectories Using Stochastic Tree Search.
- Published in:
- Genes, 2023, v. 14, n. 2, p. 318, doi. 10.3390/genes14020318
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- Publication type:
- Article
Single-Cell Co-expression Analysis Reveals Distinct Functional Modules, Co-regulation Mechanisms and Clinical Outcomes.
- Published in:
- PLoS Computational Biology, 2016, v. 12, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004892
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- Publication type:
- Article
High-temporal-resolution view of transcription and chromatin states across distinct metabolic states in budding yeast.
- Published in:
- Nature Structural & Molecular Biology, 2014, v. 21, n. 10, p. 854, doi. 10.1038/nsmb.2881
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- Publication type:
- Article
GLI transcriptional repression regulates tissue-specific enhancer activity in response to Hedgehog signaling.
- Published in:
- eLife, 2020, p. 1, doi. 10.7554/eLife.50670
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- Publication type:
- Article
Msn2/4 regulate expression of glycolytic enzymes and control transition from quiescence to growth.
- Published in:
- eLife, 2017, p. 1, doi. 10.7554/eLife.29938
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- Publication type:
- Article
ATAC-Seq analysis reveals a widespread decrease of chromatin accessibility in age-related macular degeneration.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03856-y
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- Publication type:
- Article
ARQiv-HTS, a versatile whole-organism screening platform enabling in vivo drug discovery at high-throughput rates.
- Published in:
- Nature Protocols, 2016, v. 11, n. 12, p. 2432, doi. 10.1038/nprot.2016.142
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- Publication type:
- Article
Analyzing 'omics data using hierarchical models.
- Published in:
- Nature Biotechnology, 2010, v. 28, n. 4, p. 337, doi. 10.1038/nbt.1619
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- Publication type:
- Article
An integrated software system for analyzing ChIP-chip and ChIP-seq data.
- Published in:
- 2008
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- Publication type:
- Product Review
EDClust: an EM–MM hybrid method for cell clustering in multiple-subject single-cell RNA sequencing.
- Published in:
- Bioinformatics, 2022, v. 38, n. 10, p. 2692, doi. 10.1093/bioinformatics/btac168
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- Publication type:
- Article
Prenatal Risk Factors and Perinatal and Postnatal Outcomes Associated With Maternal Opioid Exposure in an Urban, Low-Income, Multiethnic US Population.
- Published in:
- JAMA Network Open, 2019, v. 2, n. 6, p. e196405, doi. 10.1001/jamanetworkopen.2019.6405
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- Publication type:
- Article
Single-cell transcriptomic reveals molecular diversity and developmental heterogeneity of human stem cell-derived oligodendrocyte lineage cells.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-20892-3
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- Publication type:
- Article
PolyaPeak: Detecting Transcription Factor Binding Sites from ChIP-seq Using Peak Shape Information.
- Published in:
- PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0089694
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- Publication type:
- Article
Dynamics of Regulatory Networks in the Developing Mouse Retina.
- Published in:
- PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0046521
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- Publication type:
- Article
Cell-Type Independent MYC Target Genes Reveal a Primordial Signature Involved in Biomass Accumulation.
- Published in:
- PLoS ONE, 2011, v. 6, n. 10, p. 1, doi. 10.1371/journal.pone.0026057
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- Publication type:
- Article
Computational Biology: Toward Deciphering Gene Regulatory Information in Mammalian Genomes.
- Published in:
- 2006
- By:
- Publication type:
- Editorial
Investigation of the Hydrogen Silsesquioxane (HSQ) Electron Resist as Insulating Material in Phase Change Memory Devices.
- Published in:
- Journal of Electronic Materials, 2015, v. 44, n. 1, p. 235, doi. 10.1007/s11664-014-3390-0
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- Publication type:
- Article
Maternal Biomarkers of Acetaminophen Use and Offspring Attention Deficit Hyperactivity Disorder.
- Published in:
- Brain Sciences (2076-3425), 2018, v. 8, n. 7, p. 127, doi. 10.3390/brainsci8070127
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- Publication type:
- Article
A Prospective Birth Cohort Study on Maternal Cholesterol Levels and Offspring Attention Deficit Hyperactivity Disorder: NewInsight on Sex Differences.
- Published in:
- Brain Sciences (2076-3425), 2018, v. 8, n. 1, p. 3, doi. 10.3390/brainsci8010003
- By:
- Publication type:
- Article
GLI transcriptional repression is inert prior to Hedgehog pathway activation.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28485-4
- By:
- Publication type:
- Article
DNA methylation mediates the effect of maternal smoking on offspring birthweight: a birth cohort study of multi-ethnic US mother–newborn pairs.
- Published in:
- Clinical Epigenetics, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13148-021-01032-6
- By:
- Publication type:
- Article
Maternal postpartum plasma folate status and preterm birth in a high-risk US population.
- Published in:
- 2019
- By:
- Publication type:
- journal article
Association Between Maternal Exposure to Lead, Maternal Folate Status, and Intergenerational Risk of Childhood Overweight and Obesity.
- Published in:
- JAMA Network Open, 2019, v. 2, n. 10, p. e1912343, doi. 10.1001/jamanetworkopen.2019.12343
- By:
- Publication type:
- Article
Hedgehog regulation of epithelial cell state and morphogenesis in the larynx.
- Published in:
- eLife, 2022, p. 1, doi. 10.7554/eLife.77055
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- Publication type:
- Article