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MetaScore: A Novel Machine-Learning-Based Approach to Improve Traditional Scoring Functions for Scoring Protein–Protein Docking Conformations.
- Published in:
- Biomolecules (2218-273X), 2023, v. 13, n. 1, p. 121, doi. 10.3390/biom13010121
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- Article
iScore: a novel graph kernel-based function for scoring protein–protein docking models.
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- Bioinformatics, 2020, v. 36, n. 1, p. 112, doi. 10.1093/bioinformatics/btz496
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- Article
Personalized Sleep Parameters Estimation from Actigraphy: A Machine Learning Approach.
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- Nature & Science of Sleep, 2019, v. 11, p. 387, doi. 10.2147/NSS.S220716
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- Publication type:
- Article
Biomarker discovery in inflammatory bowel diseases using network-based feature selection.
- Published in:
- PLoS ONE, 2019, v. 14, n. 11, p. 1, doi. 10.1371/journal.pone.0225382
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- Article
Machine learning in clinical care: Quo vadis?
- Published in:
- 2019
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- Publication type:
- editorial
Partner‐specific prediction of RNA‐binding residues in proteins: A critical assessment.
- Published in:
- Proteins, 2019, v. 87, n. 3, p. 198, doi. 10.1002/prot.25639
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- Publication type:
- Article
Min-redundancy and max-relevance multi-view feature selection for predicting ovarian cancer survival using multi-omics data.
- Published in:
- BMC Medical Genomics, 2018, v. 11, n. 3, p. N.PAG, doi. 10.1186/s12920-018-0388-0
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- Article
Template-based protein-protein docking exploiting pairwise interfacial residue restraints.
- Published in:
- Briefings in Bioinformatics, 2017, v. 18, n. 3, p. 458, doi. 10.1093/bib/bbw027
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- Article
PlasmoSEP: Predicting surface-exposed proteins on the malaria parasite using semisupervised self-training and expert-annotated data.
- Published in:
- Proteomics, 2016, v. 16, n. 23, p. 2967, doi. 10.1002/pmic.201600249
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- Publication type:
- Article
FastRNABindR: Fast and Accurate Prediction of Protein-RNA Interface Residues.
- Published in:
- PLoS ONE, 2016, v. 11, n. 7, p. 1, doi. 10.1371/journal.pone.0158445
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- Article
Computational prediction of protein interfaces: A review of data driven methods.
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- FEBS Letters, 2015, v. 589, n. 23, p. 3516, doi. 10.1016/j.febslet.2015.10.003
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- Article
The Promise and Potential of Big Data: A Case for Discovery Informatics.
- Published in:
- Review of Policy Research, 2014, v. 31, n. 4, p. 326, doi. 10.1111/ropr.12080
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- Publication type:
- Article
RNABindRPlus: A Predictor that Combines Machine Learning and Sequence Homology-Based Methods to Improve the Reliability of Predicted RNA-Binding Residues in Proteins.
- Published in:
- PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0097725
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- Publication type:
- Article
DockRank: Ranking docked conformations using partner-specific sequence homology-based protein interface prediction.
- Published in:
- Proteins, 2014, v. 82, n. 2, p. 250, doi. 10.1002/prot.24370
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- Publication type:
- Article
Predicting the Binding Patterns of Hub Proteins: A Study Using Yeast Protein Interaction Networks.
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- PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0056833
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- Article
BioNetwork Bench: Database and Software for Storage, Query, and Analysis of Gene and Protein Networks.
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- Bioinformatics & Biology Insights, 2012, n. 6, p. 235, doi. 10.4137/BBI.S9728
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- Publication type:
- Article
Protein-RNA interface residue prediction using machine learning: an assessment of the state of the art.
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- BMC Bioinformatics, 2012, v. 13, n. 1, p. 89, doi. 10.1186/1471-2105-13-89
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- Article
Representing and Reasoning with Qualitative Preferences for Compositional Systems.
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- Journal of Artificial Intelligence Research, 2011, v. 42, p. 211
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- Publication type:
- Article
PRIDB: a protein–RNA interface database.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D277, doi. 10.1093/nar/gkq1108
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- Publication type:
- Article
HomPPI: a class of sequence homology based protein-protein interface prediction methods.
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- BMC Bioinformatics, 2011, v. 12, n. 1, p. 244, doi. 10.1186/1471-2105-12-244
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- Publication type:
- Article
Semi-supervised prediction of protein subcellular localization using abstraction augmented Markov models.
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- BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S8-S6
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- Publication type:
- Article
Detection of gene orthology from gene co-expression and protein interaction networks.
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- BMC Bioinformatics, 2010, v. 11, p. 1, doi. 10.1186/1471-2105-11-S3-S7
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- Publication type:
- Article
Characterization of the retinal proteome duringrod photoreceptor genesis.
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- BMC Research Notes, 2010, v. 3, p. 25, doi. 10.1186/1756-0500-3-25
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- Publication type:
- Article
ANEXdb: an integrated animal ANnotation and microarray EXpression database.
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- Mammalian Genome, 2009, v. 20, n. 11/12, p. 768, doi. 10.1007/s00335-009-9234-1
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- Article
Efficient Markov Network Structure Discovery Using Independence Tests.
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- Journal of Artificial Intelligence Research, 2009, v. 35, p. 449, doi. 10.1613/jair.2773
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- Article
Mixture of experts models to exploit global sequence similarity on biomolecular sequence labeling.
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- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S4-S4
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- Publication type:
- Article
On Evaluating MHC-II Binding Peptide Prediction Methods.
- Published in:
- PLoS ONE, 2008, v. 3, n. 9, p. 1, doi. 10.1371/journal.pone.0003268
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- Publication type:
- Article
Predicting linear B-cell epitopes using string kernels.
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- Journal of Molecular Recognition, 2008, v. 21, n. 4, p. 243, doi. 10.1002/jmr.893
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- Publication type:
- Article
MoSCoE:: AN APPROACH FOR COMPOSING WEB SERVICES THROUGH ITERATIVE REFORMULATION OF FUNCTIONAL SPECIFICATIONS.
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- International Journal on Artificial Intelligence Tools, 2008, v. 17, n. 1, p. 109, doi. 10.1142/S0218213008003807
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- Article
Glycosylation site prediction using ensembles of Support Vector Machine classifiers.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 438, doi. 10.1186/1471-2105-8-438
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- Publication type:
- Article
RNABindR: a server for analyzing and predicting RNA-binding sites in proteins.
- Published in:
- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W578, doi. 10.1093/nar/gkm294
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- Publication type:
- Article
A two-stage classifier for identification of protein–protein interface residues.
- Published in:
- Bioinformatics, 2004, v. 20, n. suppl_1, p. i371, doi. 10.1093/bioinformatics/bth920
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- Publication type:
- Article
Identification of interface residues in protease-inhibitor and antigen-antibody complexes: a support vector machine approach.
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- Neural Computing & Applications, 2004, v. 13, n. 2, p. 123, doi. 10.1007/s00521-004-0414-3
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- Publication type:
- Article
A two-stage classifier for identification of protein–protein interface residues.
- Published in:
- Bioinformatics, 2004, v. 20, p. i371, doi. 10.1093/bioinformatics/bth920
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- Publication type:
- Article
Predicting binding sites of hydrolase-inhibitor complexes by combining several methods.
- Published in:
- BMC Bioinformatics, 2004, v. 5, p. 205, doi. 10.1186/1471-2105-5-205
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- Publication type:
- Article