Works by Holt, Kathryn E.

Results: 109
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    The characterization of Klebsiella pneumoniae associated with neonatal sepsis in low- and middle-income countries to inform vaccine design.

    Published in:
    Communications Biology, 2025, v. 8, n. 1, p. 1, doi. 10.1038/s42003-025-08258-7
    By:
    • Nonne, Francesca;
    • Molfetta, Mariagrazia;
    • Belciug, Gianina Florentina;
    • Carducci, Martina;
    • Cianchi, Virginia;
    • Zakroff, Casey;
    • Durante, Salvatore;
    • Zellmer, Caroline;
    • Baker, Stephen;
    • Stanton, Thomas D.;
    • Holt, Kathryn E.;
    • Wyres, Kelly;
    • Ravenscroft, Neil;
    • Gasperini, Gianmarco;
    • Rossi, Omar;
    • Giannelli, Carlo;
    • Berlanda Scorza, Francesco;
    • Micoli, Francesca
    Publication type:
    Article
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    Genomic dissection of Klebsiella pneumoniae infections in hospital patients reveals insights into an opportunistic pathogen.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30717-6
    By:
    • Gorrie, Claire L.;
    • Mirčeta, Mirjana;
    • Wick, Ryan R.;
    • Judd, Louise M.;
    • Lam, Margaret M. C.;
    • Gomi, Ryota;
    • Abbott, Iain J.;
    • Thomson, Nicholas R.;
    • Strugnell, Richard A.;
    • Pratt, Nigel F.;
    • Garlick, Jill S.;
    • Watson, Kerrie M.;
    • Hunter, Peter C.;
    • Pilcher, David V.;
    • McGloughlin, Steve A.;
    • Spelman, Denis W.;
    • Wyres, Kelly L.;
    • Jenney, Adam W. J.;
    • Holt, Kathryn E.
    Publication type:
    Article
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    A global resource for genomic predictions of antimicrobial resistance and surveillance of Salmonella Typhi at pathogenwatch.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23091-2
    By:
    • Argimón, Silvia;
    • Yeats, Corin A.;
    • Goater, Richard J.;
    • Abudahab, Khalil;
    • Taylor, Benjamin;
    • Underwood, Anthony;
    • Sánchez-Busó, Leonor;
    • Wong, Vanessa K.;
    • Dyson, Zoe A.;
    • Nair, Satheesh;
    • Park, Se Eun;
    • Marks, Florian;
    • Page, Andrew J.;
    • Keane, Jacqueline A.;
    • Baker, Stephen;
    • Holt, Kathryn E.;
    • Dougan, Gordon;
    • Aanensen, David M.
    Publication type:
    Article
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    Global population structure and genotyping framework for genomic surveillance of the major dysentery pathogen, Shigella sonnei.

    Published in:
    Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-22700-4
    By:
    • Hawkey, Jane;
    • Paranagama, Kalani;
    • Baker, Kate S.;
    • Bengtsson, Rebecca J.;
    • Weill, François-Xavier;
    • Thomson, Nicholas R.;
    • Baker, Stephen;
    • Cerdeira, Louise;
    • Iqbal, Zamin;
    • Hunt, Martin;
    • Ingle, Danielle J.;
    • Dallman, Timothy J.;
    • Jenkins, Claire;
    • Williamson, Deborah A.;
    • Holt, Kathryn E.
    Publication type:
    Article
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    Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe.

    Published in:
    Nature Genetics, 2012, v. 44, n. 9, p. 1056, doi. 10.1038/ng.2369
    By:
    • Holt, Kathryn E;
    • Baker, Stephen;
    • Weill, François-Xavier;
    • Holmes, Edward C;
    • Kitchen, Andrew;
    • Yu, Jun;
    • Sangal, Vartul;
    • Brown, Derek J;
    • Coia, John E;
    • Kim, Dong Wook;
    • Choi, Seon Young;
    • Kim, Su Hee;
    • da Silveira, Wanderley D;
    • Pickard, Derek J;
    • Farrar, Jeremy J;
    • Parkhill, Julian;
    • Dougan, Gordon;
    • Thomson, Nicholas R
    Publication type:
    Article
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    Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans.

    Published in:
    Nature Genetics, 2013, v. 45, n. 10, p. 1176, doi. 10.1038/ng.2744
    By:
    • Comas, Iñaki;
    • Coscolla, Mireia;
    • Luo, Tao;
    • Borrell, Sonia;
    • Holt, Kathryn E;
    • Kato-Maeda, Midori;
    • Parkhill, Julian;
    • Malla, Bijaya;
    • Berg, Stefan;
    • Thwaites, Guy;
    • Yeboah-Manu, Dorothy;
    • Bothamley, Graham;
    • Mei, Jian;
    • Wei, Lanhai;
    • Bentley, Stephen;
    • Harris, Simon R;
    • Niemann, Stefan;
    • Diel, Roland;
    • Aseffa, Abraham;
    • Gao, Qian
    Publication type:
    Article
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    A point mutation in recC associated with subclonal replacement of carbapenem-resistant Klebsiella pneumoniae ST11 in China.

    Published in:
    Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38061-z
    By:
    • Zhou, Kai;
    • Xue, Chun-Xu;
    • Xu, Tingting;
    • Shen, Ping;
    • Wei, Sha;
    • Wyres, Kelly L.;
    • Lam, Margaret M. C.;
    • Liu, Jinquan;
    • Lin, Haoyun;
    • Chen, Yunbo;
    • Holt, Kathryn E.;
    • Ding, Hui;
    • Liu, Yongyun;
    • Mao, Haifeng;
    • Huang, Ying;
    • Yang, Zhenghai;
    • Dai, Yuanyuan;
    • Liao, Guolin;
    • Zhu, Lisha;
    • Zhang, Liping
    Publication type:
    Article
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    Gastrointestinal carriage of Klebsiella pneumoniae in a general adult population: a cross-sectional study of risk factors and bacterial genomic diversity.

    Published in:
    Gut Microbes, 2021, v. 13, n. 1, p. 1, doi. 10.1080/19490976.2021.1939599
    By:
    • Raffelsberger, Niclas;
    • Hetland, Marit Andrea Klokkhammer;
    • Svendsen, Kristian;
    • Småbrekke, Lars;
    • Löhr, Iren Høyland;
    • Andreassen, Lotte Leonore Eivindsdatter;
    • Brisse, Sylvain;
    • Holt, Kathryn E.;
    • Sundsfjord, Arnfinn;
    • Samuelsen, Ørjan;
    • Gravningen, Kirsten
    Publication type:
    Article
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    Whole genome sequence analysis of Salmonella Typhi in Papua New Guinea reveals an established population of genotype 2.1.7 sensitive to antimicrobials.

    Published in:
    PLoS Neglected Tropical Diseases, 2022, v. 16, n. 3, p. 1, doi. 10.1371/journal.pntd.0010306
    By:
    • Dyson, Zoe Anne;
    • Malau, Elisheba;
    • Horwood, Paul F.;
    • Ford, Rebecca;
    • Siba, Valentine;
    • Yoannes, Mition;
    • Pomat, William;
    • Passey, Megan;
    • Judd, Louise M.;
    • Ingle, Danielle J.;
    • Williamson, Deborah A.;
    • Dougan, Gordon;
    • Greenhill, Andrew R.;
    • Holt, Kathryn E.
    Publication type:
    Article
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    The TyphiNET data visualisation dashboard: unlocking Salmonella Typhi genomics data to support public health.

    Published in:
    Genome Medicine, 2025, v. 17, n. 1, p. 1, doi. 10.1186/s13073-025-01470-4
    By:
    • Dyson, Zoe A.;
    • Cerdeira, Louise;
    • Sharma, Vandana;
    • Carey, Megan E.;
    • Holt, Kathryn E.;
    • Aanensen, David M.;
    • Abbas, Ali H.;
    • Fayad, Antoine Abou;
    • Afolayan, Ayorinde O.;
    • Ahmed, Niyaz;
    • Ahmed, Irshad;
    • Amir, Afreenish;
    • Andleeb, Saadia;
    • Argimón, Silvia;
    • Aseffa, Abraham;
    • Ashton, Philip M.;
    • Aworh, Mabel K.;
    • Bavdekar, Ashish R.;
    • Chattaway, Marie A.;
    • Chew, Ka Lip
    Publication type:
    Article
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    Co-circulation of Multidrug-resistant Shigella Among Men Who Have Sex With Men in Australia.

    Published in:
    Clinical Infectious Diseases, 2019, v. 69, n. 9, p. 1535, doi. 10.1093/cid/ciz005
    By:
    • Ingle, Danielle J;
    • Easton, Marion;
    • Valcanis, Mary;
    • Seemann, Torsten;
    • Kwong, Jason C;
    • Stephens, Nicola;
    • Carter, Glen P;
    • Silva, Anders Gonçalves da;
    • Adamopoulos, James;
    • Baines, Sarah L;
    • Holt, Kathryn E;
    • Chow, Eric P F;
    • Fairley, Christopher K;
    • Chen, Marcus Y;
    • Kirk, Martyn D;
    • Howden, Benjamin P;
    • Williamson, Deborah A
    Publication type:
    Article
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    An Outpatient, Ambulant-Design, Controlled Human Infection Model Using Escalating Doses of Salmonella Typhi Challenge Delivered in Sodium Bicarbonate Solution.

    Published in:
    Clinical Infectious Diseases, 2014, v. 58, n. 9, p. 1230, doi. 10.1093/cid/ciu078
    By:
    • Waddington, Claire S.;
    • Darton, Thomas C.;
    • Jones, Claire;
    • Haworth, Kathryn;
    • Peters, Anna;
    • John, Tessa;
    • Thompson, Ben A. V.;
    • Kerridge, Simon A.;
    • Kingsley, Robert A.;
    • Zhou, Liqing;
    • Holt, Kathryn E.;
    • Yu, Ly-Mee;
    • Lockhart, Stephen;
    • Farrar, Jeremy J.;
    • Sztein, Marcelo B.;
    • Dougan, Gordon;
    • Angus, Brian;
    • Levine, Myron M.;
    • Pollard, Andrew J.
    Publication type:
    Article
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