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A point mutation in recC associated with subclonal replacement of carbapenem-resistant Klebsiella pneumoniae ST11 in China.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38061-z
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- Publication type:
- Article
A Shigella sonnei clone with extensive drug resistance associated with waterborne outbreaks in China.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-35136-1
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- Publication type:
- Article
Laboratory and molecular surveillance of paediatric typhoidal Salmonella in Nepal: Antimicrobial resistance and implications for vaccine policy.
- Published in:
- PLoS Neglected Tropical Diseases, 2018, v. 12, n. 3, p. 1, doi. 10.1371/journal.pntd.0006408
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- Publication type:
- Article
Whole Genome Sequence Analysis of Salmonella Typhi Isolated in Thailand before and after the Introduction of a National Immunization Program.
- Published in:
- PLoS Neglected Tropical Diseases, 2017, v. 11, n. 1, p. 1, doi. 10.1371/journal.pntd.0005274
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- Publication type:
- Article
Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch.
- Published in:
- Clinical Infectious Diseases, 2021, v. 73, p. S325, doi. 10.1093/cid/ciab784
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- Publication type:
- Article
Co-circulation of Multidrug-resistant Shigella Among Men Who Have Sex With Men in Australia.
- Published in:
- Clinical Infectious Diseases, 2019, v. 69, n. 9, p. 1535, doi. 10.1093/cid/ciz005
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- Publication type:
- Article
Shigella Serotypes Associated With Carriage in Humans Establish Persistent Infection in Zebrafish.
- Published in:
- Journal of Infectious Diseases, 2023, v. 228, n. 8, p. 1108, doi. 10.1093/infdis/jiad326
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- Publication type:
- Article
Five Years of GenoTyphi: Updates to the Global Salmonella Typhi Genotyping Framework.
- Published in:
- 2021
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- Publication type:
- journal article
ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data.
- Published in:
- BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1860-2
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- Publication type:
- Article
ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data.
- Published in:
- BMC Genomics, 2015, v. 16, n. 1, p. 667, doi. 10.1186/s12864-015-1860-2
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- Publication type:
- Article
Evidence of microevolution of Salmonella Typhimurium during a series of egg-associated outbreaks linked to a single chicken farm.
- Published in:
- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-800
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- Publication type:
- Article
Short read sequence typing (SRST): multi-locus sequence types from short reads.
- Published in:
- BMC Genomics, 2012, v. 13, n. 1, p. 338, doi. 10.1186/1471-2164-13-338
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- Publication type:
- Article
On the origin of Mycobacterium ulcerans, the causative agent of Buruli ulcer.
- Published in:
- BMC Genomics, 2012, v. 13, n. 1, p. 258, doi. 10.1186/1471-2164-13-258
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- Publication type:
- Article
Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing.
- Published in:
- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010905
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- Publication type:
- Article
Novel Subclone of Carbapenem-Resistant Klebsiella pneumoniae Sequence Type 11 with Enhanced Virulence and Transmissibility, China.
- Published in:
- 2020
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- Publication type:
- journal article
Multidrug-Resistant Salmonella enterica Serotype Typhi, Gulf of Guinea Region, Africa.
- Published in:
- Emerging Infectious Diseases, 2015, v. 21, n. 4, p. 655, doi. 10.3201/eid2104.141355
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- Publication type:
- Article
An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid.
- Published in:
- Nature Communications, 2016, v. 7, n. 10, p. 12827, doi. 10.1038/ncomms12827
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- Publication type:
- Article
The impact of genomics on precision public health: beyond the pandemic.
- Published in:
- 2021
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- Publication type:
- Editorial
Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from South and Southeast Asia.
- Published in:
- Genome Medicine, 2020, v. 12, n. 1, p. 1, doi. 10.1186/s13073-019-0706-y
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- Publication type:
- Article
Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae.
- Published in:
- Genome Medicine, 2018, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13073-018-0587-5
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- Publication type:
- Article
Extensive Capsule Locus Variation and Large-Scale Genomic Recombination within the Klebsiella pneumoniae Clonal Group 258.
- Published in:
- Genome Biology & Evolution, 2015, v. 7, n. 5, p. 1267, doi. 10.1093/gbe/evv062
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- Publication type:
- Article
Adaptive Change Inferred from Genomic Population Analysis of the ST93 Epidemic Clone of Community-Associated Methicillin-Resistant Staphylococcus aureus.
- Published in:
- Genome Biology & Evolution, 2014, v. 6, n. 2, p. 366, doi. 10.1093/gbe/evu022
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- Publication type:
- Article
Gastrointestinal Carriage Is a Major Reservoir of Klebsiella pneumoniae Infection in Intensive Care Patients.
- Published in:
- Clinical Infectious Diseases, 2017, v. 65, n. 2, p. 208, doi. 10.1093/cid/cix270
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- Publication type:
- Article
An Outpatient, Ambulant-Design, Controlled Human Infection Model Using Escalating Doses of Salmonella Typhi Challenge Delivered in Sodium Bicarbonate Solution.
- Published in:
- Clinical Infectious Diseases, 2014, v. 58, n. 9, p. 1230, doi. 10.1093/cid/ciu078
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- Publication type:
- Article
Community Interventions to Increase Stroke Preparedness and Acute Stroke Treatment Rates.
- Published in:
- Current Atherosclerosis Reports, 2017, v. 19, n. 12, p. 1, doi. 10.1007/s11883-017-0695-5
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- Publication type:
- Article
A Bayesian approach for estimating typhoid fever incidence from large‐scale facility‐based passive surveillance data.
- Published in:
- Statistics in Medicine, 2021, v. 40, n. 26, p. 5853, doi. 10.1002/sim.9159
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- Publication type:
- Article
Epidemiology and genomic analysis of Klebsiella oxytoca from a single hospital network in Australia.
- Published in:
- BMC Infectious Diseases, 2022, v. 22, n. 1, p. 1, doi. 10.1186/s12879-022-07687-7
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- Publication type:
- Article
Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi.
- Published in:
- BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-36
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- Publication type:
- Article
Polypolish: Short-read polishing of long-read bacterial genome assemblies.
- Published in:
- PLoS Computational Biology, 2022, v. 18, n. 1, p. 1, doi. 10.1371/journal.pcbi.1009802
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- Publication type:
- Article
Identifying adaptive differences could provide insight.
- Published in:
- 2009
- By:
- Publication type:
- Letter
Unlocking the Potential of Genomic Data to Inform Typhoid Fever Control Policy: Supportive Resources for Genomic Data Generation, Analysis, and Visualization.
- Published in:
- Open Forum Infectious Diseases, 2023, v. 10, p. S38, doi. 10.1093/ofid/ofad044
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- Publication type:
- Article
Multiple introductions of multidrug-resistant typhoid associated with acute infection and asymptomatic carriage, Kenya.
- Published in:
- eLife, 2021, p. 1, doi. 10.7554/eLife.67852
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- Publication type:
- Article
A linear plasmid truncation induces unidirectional flagellar phase change in H:z66 positive Salmonella Typhi.
- Published in:
- Molecular Microbiology, 2007, v. 66, n. 5, p. 1207, doi. 10.1111/j.1365-2958.2007.05995.x
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- Publication type:
- Article
ESBL plasmids in Klebsiella pneumoniae: diversity, transmission and contribution to infection burden in the hospital setting.
- Published in:
- Genome Medicine, 2022, v. 14, n. 1, p. 1, doi. 10.1186/s13073-022-01103-0
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- Publication type:
- Article
Protection conferred by typhoid fever against recurrent typhoid fever in urban Kolkata.
- Published in:
- PLoS Neglected Tropical Diseases, 2020, v. 14, n. 8, p. 1, doi. 10.1371/journal.pntd.0008530
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- Publication type:
- Article
Population structure and antimicrobial resistance patterns of Salmonella Typhi isolates in urban Dhaka, Bangladesh from 2004 to 2016.
- Published in:
- PLoS Neglected Tropical Diseases, 2020, v. 14, n. 2, p. 1, doi. 10.1371/journal.pntd.0008036
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- Publication type:
- Article
High-Resolution Genotyping of the Endemic Salmonella Typhi Population during a Vi (Typhoid) Vaccination Trial in Kolkata.
- Published in:
- PLoS Neglected Tropical Diseases, 2012, v. 6, n. 1, p. 1, doi. 10.1371/journal.pntd.0001490
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- Publication type:
- Article
High-Resolution Genotyping of the Endemic Salmonella Typhi Population during a Vi (Typhoid) Vaccination Trial in Kolkata.
- Published in:
- PLoS Neglected Tropical Diseases, 2012, v. 6, n. 1, p. 1, doi. 10.1371/journal.pntd.0001490
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- Publication type:
- Article
Emergence of a Globally Dominant IncHI1 Plasmid Type Associated with Multiple Drug Resistant Typhoid.
- Published in:
- PLoS Neglected Tropical Diseases, 2011, v. 5, n. 7, p. 1, doi. 10.1371/journal.pntd.0001245
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- Publication type:
- Article
Emergence of a Globally Dominant IncHI1 Plasmid Type Associated with Multiple Drug Resistant Typhoid.
- Published in:
- PLoS Neglected Tropical Diseases, 2011, v. 5, n. 7, p. 1, doi. 10.1371/journal.pntd.0001245
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- Publication type:
- Article
Temporal Fluctuation of Multidrug Resistant Salmonella Typhi Haplotypes in the Mekong River Delta Region of Vietnam.
- Published in:
- PLoS Neglected Tropical Diseases, 2011, v. 5, n. 1, p. 1, doi. 10.1371/journal.pntd.0000929
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- Publication type:
- Article
Out-of-Africa migration and Neolithic coexpansion of Mycobacterium tuberculosis with modern humans.
- Published in:
- Nature Genetics, 2013, v. 45, n. 10, p. 1176, doi. 10.1038/ng.2744
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- Publication type:
- Article
Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe.
- Published in:
- Nature Genetics, 2012, v. 44, n. 9, p. 1056, doi. 10.1038/ng.2369
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- Publication type:
- Article
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi.
- Published in:
- Nature Genetics, 2008, v. 40, n. 8, p. 987, doi. 10.1038/ng.195
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- Publication type:
- Article
A novel ciprofloxacin-resistant subclade of H58 Salmonella Typhi is associated with fluoroquinolone treatment failure.
- Published in:
- eLife, 2016, p. 1, doi. 10.7554/eLife.14003
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- Publication type:
- Article
Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination.
- Published in:
- Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-05114-7
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- Publication type:
- Article
Pathogen genomic surveillance of typhoidal Salmonella infection in adults and children reveals no association between clinical outcomes and infecting genotypes.
- Published in:
- Tropical Medicine & Health, 2020, v. 48, n. 1, p. 1, doi. 10.1186/s41182-020-00247-2
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- Publication type:
- Article
GeneMates: an R package for detecting horizontal gene co-transfer between bacteria using gene-gene associations controlled for population structure.
- Published in:
- BMC Genomics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12864-020-07019-6
- By:
- Publication type:
- Article
Inferring demographic parameters in bacterial genomic data using Bayesian and hybrid phylogenetic methods.
- Published in:
- BMC Evolutionary Biology, 2018, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12862-018-1210-5
- By:
- Publication type:
- Article
A GC1 Acinetobacter baumannii isolate carrying AbaR3 and the aminoglycoside resistance transposon TnaphA6 in a conjugative plasmid.
- Published in:
- 2014
- By:
- Publication type:
- journal article