Works matching AU Holmes, David S.

Results: 46

Comparative Genomics of Sigma Factors in Acidithiobacillia Sheds Light into the Transcriptional Regulatory Networks Involved in Biogeochemical Dynamics in Extreme Acidic Environments.

Published in:

Microorganisms, 2025, v. 13, n. 6, p. 1199, doi. 10.3390/microorganisms13061199

By:

Sepúlveda-Rebolledo, Pedro;
González-Rosales, Carolina;
Dopson, Mark;
Pérez-Rueda, Ernesto;
Holmes, David S.;
Valdés, Jorge H.

Publication type:

Article

Lessons from the genomes of extremely acidophilic bacteria and archaea with special emphasis on bioleaching microorganisms.

Published in:

Applied Microbiology & Biotechnology, 2010, v. 88, n. 3, p. 605, doi. 10.1007/s00253-010-2795-9

By:

Cárdenas, Juan Pablo;
Valdés, Jorge;
Quatrini, Raquel;
Duarte, Francisco;
Holmes, David S.

Publication type:

Article

Draft genome sequence of Acidithiobacillus thiooxidans CLST isolated from the acidic hypersaline Gorbea salt flat in northern Chile.

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0305-8

By:

Quatrini, Raquel;
Escudero, Lorena V.;
Moya-Beltrán, Ana;
Galleguillos, Pedro A.;
Issotta, Francisco;
Acosta, Mauricio;
Cárdenas, Juan Pablo;
Nuñez, Harold;
Salinas, Karina;
Holmes, David S.;
Demergasso, Cecilia

Publication type:

Article

Draft genome sequence of the type strain of the sulfur-oxidizing acidophile, Acidithiobacillus albertensis (DSM 14366).

Published in:

Standards in Genomic Sciences, 2017, v. 12, p. 1, doi. 10.1186/s40793-017-0282-y

By:

Castro, Matías;
Moya-Beltrán, Ana;
Covarrubias, Paulo C.;
Gonzalez, Mónica;
Cardenas, Juan Pablo;
Issotta, Francisco;
Nuñez, Harold;
Acuña, Lillian G.;
Encina, Gonzalo;
Holmes, David S.;
Johnson, D. Barrie;
Quatrini, Raquel

Publication type:

Article

The Effects of Reminiscing on the Perceived Control and Social Relations of Institutionalized Elderly.

Published in:

Activities, Adaptation & Aging, 1993, v. 8, n. 3/4, p. 95, doi. 10.1300/J016v08n03_12

By:

Schafer, Donna E.;
Berghorn, Forrest J.;
Holmes, David S.;
Quadagno, Jill S.

Publication type:

Article

Association of Aerobic Fitness with Pulse Rate and Subjective Responses to Psychological Stress.

Published in:

Psychophysiology, 1985, v. 22, n. 5, p. 525, doi. 10.1111/j.1469-8986.1985.tb01644.x

By:

Holmes, David S.;
Roth, David L.

Publication type:

Article

Utility of Voluntary Control of Respiration and Biofeedback for Increasing and Decreasing Heart Rate.

Published in:

Psychophysiology, 1979, v. 16, n. 5, p. 432, doi. 10.1111/j.1469-8986.1979.tb01498.x

By:

Holmes, David S.;
Solomon, Sheldon;
Buchsbaum, Helen K.

Publication type:

Article

Effects of Multiple Sessions of True and Placebo Heart Rate Biofeedback Training on the Heart Rates and Anxiety Levels of Anxious Patients During and Following Treatment.

Published in:

Psychophysiology, 1978, v. 15, n. 6, p. 582, doi. 10.1111/j.1469-8986.1978.tb03115.x

By:

Rupert, Patricia A.;
Holmes, David S.

Publication type:

Article

Stress and EEG-Alpha.

Published in:

Psychophysiology, 1978, v. 15, n. 5, p. 394, doi. 10.1111/j.1469-8986.1978.tb01402.x

By:

Frost, Randy O.;
Burish, Thomas G.;
Holmes, David S.

Publication type:

Article

AciDB 1.0: a database of acidophilic organisms, their genomic information and associated metadata.

Published in:

Bioinformatics, 2020, v. 36, n. 19, p. 4970, doi. 10.1093/bioinformatics/btaa638

By:

Neira, Gonzalo;
Cortez, Diego;
Jil, Joaquin;
Holmes, David S

Publication type:

Article

AlterORF: a database of alternate open reading frames.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D517

By:

Pedroso, Inti;
Rivera, Gustavo;
Lazo, Felipe;
Chacón, Max;
Ossandón, Francisco;
Veloso, Felipe A.;
Holmes, David S.

Publication type:

Article

Bioinformatic prediction and experimental verification of Fur-regulated genes in the extreme acidophile Acidithiobacillus ferrooxidans.

Published in:

Nucleic Acids Research, 2007, v. 35, n. 7, p. 2153, doi. 10.1093/nar/gkm068

By:

Quatrini, Raquel;
Lefimil, Claudia;
Veloso, Felipe A.;
Pedroso, Inti;
Holmes, David S.;
Jedlicki, Eugenia

Publication type:

Article

Genes and pathways for CO2 fixation in the obligate, chemolithoautotrophic acidophile, Acidithiobacillus ferrooxidans, Carbon fixation in A. ferrooxidans.

Published in:

BMC Microbiology, 2010, v. 10, p. 229, doi. 10.1186/1471-2180-10-229

By:

Esparza, Mario;
Cárdenas, Juan Pablo;
Bowien, Botho;
Jedlicki, Eugenia;
Holmes, David S.

Publication type:

Article

The application of learning theory to the treatment of a school behavior problem: A case study.

Published in:

Psychology in the Schools, 1966, v. 3, n. 4, p. 355, doi. 10.1002/1520-6807(196610)3:4<355::AID-PITS2310030411>3.0.CO;2-A

By:

Holmes, David S.

Publication type:

Article

Integrative Genomics Sheds Light on Evolutionary Forces Shaping the Acidithiobacillia Class Acidophilic Lifestyle.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2021.822229

By:

González-Rosales, Carolina;
Vergara, Eva;
Dopson, Mark;
Valdés, Jorge H.;
Holmes, David S.

Publication type:

Article

Genomic insights into microbial iron oxidation and iron uptake strategies in extremely acidic environments.

Published in:

Environmental Microbiology, 2012, v. 14, n. 7, p. 1597, doi. 10.1111/j.1462-2920.2011.02626.x

By:

Bonnefoy, Violaine;
Holmes, David S.

Publication type:

Article

Unlocking Survival Mechanisms for Metal and Oxidative Stress in the Extremely Acidophilic, Halotolerant Acidihalobacter Genus.

Published in:

Genes, 2020, v. 11, n. 12, p. 1392, doi. 10.3390/genes11121392

By:

Khaleque, Himel Nahreen;
Fathollazadeh, Homayoun;
González, Carolina;
Shafique, Raihan;
Kaksonen, Anna H.;
Holmes, David S.;
Watkin, Elizabeth L.J.

Publication type:

Article

Evolution of Predicted Acid Resistance Mechanisms in the Extremely Acidophilic Leptospirillum Genus.

Published in:

Genes, 2020, v. 11, n. 4, p. 1, doi. 10.3390/genes11040389

By:

Vergara, Eva;
Neira, Gonzalo;
González, Carolina;
Cortez, Diego;
Dopson, Mark;
Holmes, David S.

Publication type:

Article

Graphlet Based Metrics for the Comparison of Gene Regulatory Networks.

Published in:

PLoS ONE, 2016, v. 11, n. 10, p. 1, doi. 10.1371/journal.pone.0163497

By:

Martin, Alberto J. M.;
Dominguez, Calixto;
Contreras-Riquelme, Sebastián;
Holmes, David S.;
Perez-Acle, Tomas

Publication type:

Article

Genome Analysis of the Biotechnologically Relevant Acidophilic Iron Oxidising Strain JA12 Indicates Phylogenetic and Metabolic Diversity within the Novel Genus “Ferrovum”.

Published in:

PLoS ONE, 2016, v. 11, n. 1, p. 1, doi. 10.1371/journal.pone.0146832

By:

Ullrich, Sophie R.;
Poehlein, Anja;
Tischler, Judith S.;
González, Carolina;
Ossandon, Francisco J.;
Daniel, Rolf;
Holmes, David S.;
Schlömann, Michael;
Mühling, Martin

Publication type:

Article

AFAL: a web service for profiling amino acids surrounding ligands in proteins.

Published in:

Journal of Computer-Aided Molecular Design, 2014, v. 28, n. 8, p. 1069, doi. 10.1007/s10822-014-9783-6

By:

Arenas-Salinas, Mauricio;
Ortega-Salazar, Samuel;
Gonzales-Nilo, Fernando;
Pohl, Ehmke;
Holmes, David S.;
Quatrini, Raquel

Publication type:

Article

Multiple Osmotic Stress Responses in Acidihalobacter prosperus Result in Tolerance to Chloride Ions.

Published in:

Frontiers in Microbiology, 2017, v. 7, p. 1, doi. 10.3389/fmicb.2016.02132

By:

Dopson, Mark;
Holmes, David S.;
Lazcano, Marcelo;
McCredden, Timothy J.;
Bryan, Christopher G.;
Mulroney, Kieran T.;
Steuart, Robert;
Jackaman, Connie;
Watkin, Elizabeth L. J.

Publication type:

Article

Bioinformatic Analyses of Unique (Orphan) Core Genes of the Genu Acidithiobacillus: Functional Inferences and Use As Molecular Probes for Genomic and Metagenomic/Transcriptomic Interrogation.

Published in:

Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.02035

By:

González, Carolina;
Lazcano, Marcelo;
Valdés, Jorge;
Holmes, David S.;
Zheng Wang

Publication type:

Article

Aerobic Lineage of the Oxidative Stress Response Protein Rubrerythrin Emerged in an Ancient icroaerobic, (Hyper)Thermophilic Environment.

Published in:

Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.01822

By:

Cardenas, Juan P.;
Quatrini, Raquel;
Holmes, David S.

Publication type:

Article

Evaluations of the Work of Men and Women as a Function of the Sex of the Judge and Type of Work.

Published in:

Journal of Applied Social Psychology, 1977, v. 7, n. 1, p. 89, doi. 10.1111/j.1559-1816.1977.tb02420.x

By:

Cline, Mary Ellen;
Holmes, David S.;
Werner, Jana C.

Publication type:

Article

Influence of Sex and Dress on Cooperation: An Instance of 'Person' Chauvinism.

Published in:

Journal of Applied Social Psychology, 1976, v. 6, n. 3, p. 206, doi. 10.1111/j.1559-1816.1976.tb01325.x

By:

McGovern, Jana L;
Holmes, David S.

Publication type:

Article

A Large-Scale Multiple Genome Comparison of Acidophilic Archaea (pH ≤ 5.0) Extends Our Understanding of Oxidative Stress Responses in Polyextreme Environments.

Published in:

Antioxidants, 2022, v. 11, n. 1, p. 59, doi. 10.3390/antiox11010059

By:

Neira, Gonzalo;
Vergara, Eva;
Cortez, Diego;
Holmes, David S.

Publication type:

Article

The Relationship Between Expected Grades and Students' Evaluations of Their Instructors.

Published in:

Educational & Psychological Measurement, 1971, v. 31, n. 4, p. 951, doi. 10.1177/001316447103100419

By:

Holmes, David S.

Publication type:

Article

Mutantelec: An In Silico mutation simulation platform for comparative electrostatic potential profiling of proteins.

Published in:

Journal of Computational Chemistry, 2017, v. 38, n. 7, p. 467, doi. 10.1002/jcc.24712

By:

Valdebenito‐Maturana, Braulio;
Reyes‐Suarez, Jose Antonio;
Henriquez, Jaime;
Holmes, David S.;
Quatrini, Raquel;
Pohl, Ehmke;
Arenas‐Salinas, Mauricio

Publication type:

Article

TnpPred: AWeb Service for the Robust Prediction of Prokaryotic Transposases.

Published in:

Comparative & Functional Genomics, 2012, p. 1, doi. 10.1155/2012/678761

By:

Riadi, Gonzalo;
Medina-Moenne, Cristobal;
Holmes, David S.

Publication type:

Article

Identification and Unusual Properties of the Master Regulator FNR in the Extreme Acidophile Acidithiobacillus ferrooxidans.

Published in:

Frontiers in Microbiology, 2019, p. 1, doi. 10.3389/fmicb.2019.01642

By:

Osorio, Héctor;
Mettert, Erin;
Kiley, Patricia;
Dopson, Mark;
Jedlicki, Eugenia;
Holmes, David S.

Publication type:

Article

Effect of CO2 Concentration on Uptake and Assimilation of Inorganic Carbon in the Extreme Acidophile Acidithiobacillus ferrooxidans.

Published in:

Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00603

By:

Esparza, Mario;
Jedlicki, Eugenia;
González, Carolina;
Dopson, Mark;
Holmes, David S.

Publication type:

Article

Transposition of ISF2 in Thiobacillus ferrooxidans.

Published in:

Molecular Microbiology, 1994, v. 12, n. 1, p. 165

By:

Cádiz, Reginaldo;
Gaete, Leonardo;
Jedlicki, Eugenia;
Yates, James;
Holmes, David S.;
Orellana, Omar

Publication type:

Article

Improved ontology for eukaryotic single-exon coding sequences in biological databases.

Published in:

Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay089

By:

Jorquera, Roddy;
González, Carolina;
Clausen, Philip;
Petersen, Bent;
Holmes, David S

Publication type:

Article

SinEx DB: a database for single exon coding sequences in mammalian genomes.

Published in:

Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw095

By:

Jorquera, Roddy;
Ortiz, Rodrigo;
Ossandon, F.;
Cárdenas, Juan Pablo;
Sepúlveda, Rene;
González, Carolina;
Holmes, David S.

Publication type:

Article

Architecture and Gene Repertoire of the Flexible Genome of the Extreme Acidophile Acidithiobacillus caldus.

Published in:

PLoS ONE, 2013, v. 8, n. 11, p. 1, doi. 10.1371/journal.pone.0078237

By:

Acuña, Lillian G.;
Cárdenas, Juan Pablo;
Covarrubias, Paulo C.;
Haristoy, Juan José;
Flores, Rodrigo;
Nuñez, Harold;
Riadi, Gonzalo;
Shmaryahu, Amir;
Valdés, Jorge;
Dopson, Mark;
Rawlings, Douglas E.;
Banfield, Jillian F.;
Holmes, David S.;
Quatrini, Raquel

Publication type:

Article

Eurypsychrophilic acidophiles: From (meta)genomes to low-temperature biotechnologies.

Published in:

Frontiers in Microbiology, 2023, v. 14, p. 1, doi. 10.3389/fmicb.2023.1149903

By:

Dopson, Mark;
González-Rosales, Carolina;
Holmes, David S.;
Mykytczuk, Nadia

Publication type:

Article

Genome-guided prediction of acid resistance mechanisms in acidophilic methanotrophs of phylogenetically deep-rooted Verrucomicrobia isolated from geothermal environments.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.900531

By:

Neira, Gonzalo;
Vergara, Eva;
Holmes, David S.

Publication type:

Article

A Large-Scale Genome-Based Survey of Acidophilic Bacteria Suggests That Genome Streamlining Is an Adaption for Life at Low pH.

Published in:

Frontiers in Microbiology, 2022, v. 13, p. 1, doi. 10.3389/fmicb.2022.803241

By:

Cortez, Diego;
Neira, Gonzalo;
González, Carolina;
Vergara, Eva;
Holmes, David S.

Publication type:

Article

Fear of Success: The Influence of Sex, Sex-Role Identity, and Components of Masculinity.

Published in:

Sex Roles, 1984, v. 10, n. 5-6, p. 341, doi. 10.1007/BF00287551

By:

Cano, Liane;
Solomon, Sheldon;
Holmes, David S.

Publication type:

Article

Genomic insights into the iron uptake mechanisms of the biomining microorganism Acidithiobacillus ferrooxidans.

Published in:

Journal of Industrial Microbiology & Biotechnology, 2005, v. 32, n. 11/12, p. 606, doi. 10.1007/s10295-005-0233-2

By:

Quatrini, Raquel;
Jedlicki, Eugenia;
Holmes, David S.

Publication type:

Article

EFFECTS OF AFFECTIVE AND COGNITIVE DISTRACTIONS ON ANXIETY REDUCTION.

Published in:

Journal of Social Psychology, 1980, v. 112, n. 1, p. 121, doi. 10.1080/00224545.1980.9924304

By:

Ribordy, Sheila C.;
Holmes, David S.;
Buchseaum, Helen K.

Publication type:

Article

ROLE PLAYING VERSUS DECEPTION: THE ABILITY OF SUBJECTS TO SIMULATE SELF-REPORT AND PHYSIOLOGICAL RESPONSES.

Published in:

Journal of Social Psychology, 1975, v. 96, n. 1, p. 91, doi. 10.1080/00224545.1975.9923266

By:

Houston, B. Kent;
Holmes, David S.

Publication type:

Article

Visual aftermovement effects, pupillary constriction and personality differences.

Published in:

1971

By:

Holmes, David S.;
Holmes, D S

Publication type:

journal article

Molecular dynamics study of the archaeal aquaporin AqpM.

Published in:

BMC Genomics, 2011, v. 12, n. Suppl 4, p. 1, doi. 10.1186/1471-2164-12-S4-S8

By:

Araya-Secchi, Raul;
J. A. Garate;
Holmes, David S.;
Perez-Acle, Tomas

Publication type:

Article

Extending the models for iron and sulfur oxidation in the extreme Acidophile Acidithiobacillus ferrooxidans.

Published in:

BMC Genomics, 2009, v. 10, p. 394, doi. 10.1186/1471-2164-10-394

By:

Quatrini, Raquel;
Appia-Ayme, Corinne;
Denis, Yann;
Jedlicki, Eugenia;
Holmes, David S.;
Bonnefoy, Violaine

Publication type:

Article