Works by Holmes, Chris

Results: 94

Key Issues in Conducting a Meta-Analysis of Gene Expression Microarray Datasets.

Published in:

PLoS Medicine, 2008, v. 5, n. 9, p. e184, doi. 10.1371/journal.pmed.0050184

By:

Ramasamy, Adaikalavan;
Mondry, Adrian;
Holmes, Chris C;
Altman, Douglas G

Publication type:

Article

Bayesian hierarchical mixture modeling to assign copy number from a targeted CNV array.

Published in:

Genetic Epidemiology, 2011, v. 35, n. 6, p. 536, doi. 10.1002/gepi.20604

By:

Cardin, Niall;
Holmes, Chris;
Donnelly, Peter;
Marchini, Jonathan

Publication type:

Article

Detecting interacting genetic loci with effects on quantitative traits where the nature and order of the interaction are unknown.

Published in:

Genetic Epidemiology, 2010, v. 34, n. 4, p. 299, doi. 10.1002/gepi.20461

By:

Davies, Joanna L.;
Hein, Jotun;
Holmes, Chris C.

Publication type:

Article

STAC3 variants cause a congenital myopathy with distinctive dysmorphic features and malignant hyperthermia susceptibility.

Published in:

Human Mutation, 2018, v. 39, n. 12, p. 1980, doi. 10.1002/humu.23635

By:

Zaharieva, Irina T.;
Sarkozy, Anna;
Munot, Pinki;
Manzur, Adnan;
O'Grady, Gina;
Rendu, John;
Malfatti, Eduardo;
Amthor, Helge;
Servais, Laurent;
Urtizberea, J. Andoni;
Neto, Osorio Abath;
Zanoteli, Edmar;
Donkervoort, Sandra;
Taylor, Juliet;
Dixon, Joanne;
Poke, Gemma;
Foley, A. Reghan;
Holmes, Chris;
Williams, Glyn;
Holder, Muriel

Publication type:

Article

GREVE: Genomic Recurrent Event ViEwer to assist the identification of patterns across individual cancer samples.

Published in:

Bioinformatics, 2012, v. 28, n. 22, p. 2981, doi. 10.1093/bioinformatics/bts547

By:

Cazier, Jean-Baptiste;
Holmes, Chris C.;
Broxholme, John

Publication type:

Article

nEASE: a method for gene ontology subclassification of high-throughput gene expression data.

Published in:

Bioinformatics, 2012, v. 28, n. 5, p. 726, doi. 10.1093/bioinformatics/bts011

By:

Chittenden, Thomas W.;
Howe, Eleanor A.;
Taylor, Jennifer M.;
Mar, Jessica C.;
Aryee, Martin J.;
Gómez, Harold;
Sultana, Razvan;
Braisted, John;
Nair, Sarita J.;
Quackenbush, John;
Holmes, Chris

Publication type:

Article

A boosting approach to structure learning of graphs with and without prior knowledge.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 2929, doi. 10.1093/bioinformatics/btp485

By:

Anjum, Shahzia;
Doucet, Arnaud;
Holmes, Chris C.

Publication type:

Article

Approximate Bayesian feature selection on a large meta-dataset offers novel insights on factors that effect siRNA potency.

Published in:

Bioinformatics, 2009, v. 25, n. 13, p. 1594, doi. 10.1093/bioinformatics/btp284

By:

Jochen W. Klingelhoefer;
Loukas Moutsianas;
Chris Holmes

Publication type:

Article

Phylogenetic inference under recombination using Bayesian stochastic topology selection.

Published in:

Bioinformatics, 2009, v. 25, n. 2, p. 197, doi. 10.1093/bioinformatics/btn607

By:

Alex Webb;
John M. Hancock;
Chris C. Holmes

Publication type:

Article

A multidisciplinary quality improvement program increases the inferior vena cava filter retrieval rate.

Published in:

Vascular Medicine, 2017, v. 22, n. 1, p. 51, doi. 10.1177/1358863X16676658

By:

P. Winters, John;
Morris, Christopher S.;
Holmes, Chris E.;
Lewis, Patricia;
Bhave, Anant D.;
Najarian, Kenneth E.;
Shields, Joseph T.;
Charash, William;
Cushman, Mary

Publication type:

Article

Efficacy of a short course of complex lymphedema therapy or graduated compression stocking therapy in the treatment of post-thrombotic syndrome.

Published in:

Vascular Medicine, 2014, v. 19, n. 1, p. 42, doi. 10.1177/1358863X14521883

By:

Holmes, Chris E;
Bambace, Nadia M;
Lewis, Patricia;
Callas, Peter W;
Cushman, Mary

Publication type:

Article

Correction to: Graphing and reporting heterogeneous treatment effects through reference classes.

Published in:

2020

By:

Watson, James A.;
Holmes, Chris C.

Publication type:

corrected article

Effects of Hyperbaric Oxygen.

Published in:

Journal of Infectious Diseases, 1987, v. 155, n. 5, p. 1084

By:

Holmes, Chris;
Garges, Larry

Publication type:

Article

An association between anti-platelet drug use andreduced cancer prevalence in diabetic patients:results from the Vermont Diabetes InformationSystem Study.

Published in:

BMC Cancer, 2010, v. 10, p. 289, doi. 10.1186/1471-2407-10-289

By:

Holmes, Chris E.;
Ramos-Nino, Maria E.;
Littenberg, Benjamin

Publication type:

Article

Characterization of purine-rich element binding protein B as a novel biomarker in acute myelogenous leukemia prognostication.

Published in:

Journal of Cellular Biochemistry, 2018, v. 119, n. 2, p. 2073, doi. 10.1002/jcb.26369

By:

Kelm, Jr, Robert J.;
Lamba, Gurpreet S.;
Levis, Jamie E.;
Holmes, Chris E.

Publication type:

Article

Publisher Correction: Development and assessment of a machine learning tool for predicting emergency admission in Scotland.

Published in:

2024

By:

Liley, James;
Bohner, Gergo;
Emerson, Samuel R.;
Mateen, Bilal A.;
Borland, Katie;
Carr, David;
Heald, Scott;
Oduro, Samuel D.;
Ireland, Jill;
Moffat, Keith;
Porteous, Rachel;
Riddell, Stephen;
Rogers, Simon;
Thoma, Ioanna;
Cunningham, Nathan;
Holmes, Chris;
Payne, Katrina;
Vollmer, Sebastian J.;
Vallejos, Catalina A.;
Aslett, Louis J. M.

Publication type:

Correction Notice

Development and assessment of a machine learning tool for predicting emergency admission in Scotland.

Published in:

NPJ Digital Medicine, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s41746-024-01250-1

By:

Liley, James;
Bohner, Gergo;
Emerson, Samuel R.;
Mateen, Bilal A.;
Borland, Katie;
Carr, David;
Heald, Scott;
Oduro, Samuel D.;
Ireland, Jill;
Moffat, Keith;
Porteous, Rachel;
Riddell, Stephen;
Rogers, Simon;
Thoma, Ioanna;
Cunningham, Nathan;
Holmes, Chris;
Payne, Katrina;
Vollmer, Sebastian J.;
Vallejos, Catalina A.;
Aslett, Louis J. M.

Publication type:

Article

Improving statistical power in severe malaria genetic association studies by augmenting phenotypic precision.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.69698

By:

Watson, James A.;
Ndila, Carolyne M.;
Uyoga, Sophie;
Macharia, Alexander;
Nyutu, Gideon;
Mohammed, Shebe;
Ngetsa, Caroline;
Mturi, Neema;
Peshu, Norbert;
Tsofa, Benjamin;
Rockett, Kirk;
Leopold, Stije;
Kingston, Hugh;
George, Elizabeth C.;
Maitland, Kathryn;
Day, Nicholas P. J.;
Dondorp, Arjen M.;
Bejon, Philip;
Williams, Thomas;
Holmes, Chris C.

Publication type:

Article

Author Correction: Statistical machine learning of sleep and physical activity phenotypes from sensor data in 96,220 UK Biobank participants.

Published in:

2022

By:

Willetts, Matthew;
Hollowell, Sven;
Aslett, Louis;
Holmes, Chris;
Doherty, Aiden

Publication type:

Correction Notice

Viral genome wide association study identifies novel hepatitis C virus polymorphisms associated with sofosbuvir treatment failure.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25649-6

By:

Smith, David A.;
Fernandez-Antunez, Carlota;
Magri, Andrea;
Bowden, Rory;
Chaturvedi, Nimisha;
Fellay, Jacques;
McLauchlan, John;
Foster, Graham R.;
Irving, William L.;
STOP-HCV Consortium;
Ball, Jonathan;
Brainard, Diana;
Burgess, Gary;
Cooke, Graham;
Dillon, John;
Gore, Charles;
Guha, Neil;
Halford, Rachel;
Herath, Cham;
Holmes, Chris

Publication type:

Article

A Novel Test for Gene-Ancestry Interactions in Genome-Wide Association Data.

Published in:

PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0048687

By:

Davies, Joanna L.;
Cazier, Jean-Baptiste;
Dunlop, Malcolm G.;
Houlston, Richard S.;
Tomlinson, Ian P.;
Holmes, Chris C.

Publication type:

Article

MicroRNA Expression in Abdominal and Gluteal Adipose Tissue Is Associated with mRNA Expression Levels and Partly Genetically Driven.

Published in:

PLoS ONE, 2011, v. 6, n. 11, p. 1, doi. 10.1371/journal.pone.0027338

By:

Rantalainen, Mattias;
Herrera, Blanca M.;
Nicholson, George;
Bowden, Rory;
Wills, Quin F.;
Min, Josine L.;
Neville, Matt J.;
Barrett, Amy;
Allen, Maxine;
Rayner, Nigel W.;
Fleckner, Jan;
McCarthy, Mark I.;
Zondervan, Krina T.;
Karpe, Fredrik;
Holmes, Chris C.;
Lindgren, Cecilia M.

Publication type:

Article

Therapeutic Implications of GIPC1 Silencing in Cancer.

Published in:

PLoS ONE, 2010, v. 5, n. 12, p. 1, doi. 10.1371/journal.pone.0015581

By:

Chittenden, Thomas W.;
Pak, Jane;
Rubio, Renee;
Hailing Cheng;
Holton, Kristina;
Prendergast, Niall;
Glinskii, Vladimir;
Yi Cai;
Culhane, Aedin;
Bentink, Stefan;
Schwede, Mathew;
Mar, Jessica C.;
Howe, Eleanor A.;
Aryee, Martin;
Sultana, Razvan;
Lanahan, Anthony A.;
Taylor, Jennifer M.;
Holmes, Chris;
Hahn, William C.;
Zhao, Jean J.

Publication type:

Article

Estimation of malaria haplotype and genotype frequencies: a statistical approach to overcome the challenge associated with multiclonal infections.

Published in:

Malaria Journal, 2014, v. 13, n. 1, p. 1, doi. 10.1186/1475-2875-13-102

By:

Taylor, Aimee R.;
Flegg, Jennifer A.;
Nsobya, Samuel L.;
Yeka, Adoke;
Kamya, Moses R.;
Rosenthal, Philip J.;
Dorsey, Grant;
Sibley, Carol H.;
Guerin, Philippe J.;
Holmes, Chris C.

Publication type:

Article

A Bayesian model for estimating with-in host P. falciparum haplotype frequencies.

Published in:

2012

By:

Taylor, Aimee R.;
Flegg, Jennifer A.;
Guerin, Philippe J.;
Roper, Cally;
Holmes, Chris

Publication type:

Abstract

A cautionary note on the use of unsupervised machine learning algorithms to characterise malaria parasite population structure from genetic distance matrices.

Published in:

PLoS Genetics, 2020, v. 16, n. 10, p. 1, doi. 10.1371/journal.pgen.1009037

By:

Watson, James A.;
Taylor, Aimee R.;
Ashley, Elizabeth A.;
Dondorp, Arjen;
Buckee, Caroline O.;
White, Nicholas J.;
Holmes, Chris C.

Publication type:

Article

Prospective evaluation of drug–drug interactions in ambulatory cancer patients initiated on prophylactic anticoagulation.

Published in:

Journal of Oncology Pharmacy Practice, 2020, v. 26, n. 7, p. 1637, doi. 10.1177/1078155220901569

By:

Ng, Hank K;
Rogala, Britny G;
Ades, Steven;
Schwartz, Joanna R;
Ashikaga, Takamaru;
Vacek, Pamela;
Holmes, Chris E

Publication type:

Article

When Clinical Trial Participation Is Not an Option in the Era of Personalized Medicine: The Case of Two Patients.

Published in:

Oncology, 2017, v. 92, n. 1, p. 55, doi. 10.1159/000450712

By:

Verschraegen, Claire F.;
Rehman, Hibba;
Pulluri, Bhargavi;
DeKay, James;
Barry, Maura;
Folefac, Edmund;
Dittus, Kim;
Holmes, Chris;
Sprague, Julian;
Ades, Steve;
Gibson, Pam C.

Publication type:

Article

Optimal strategies for learning multi-ancestry polygenic scores vary across traits.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-38930-7

By:

Lehmann, Brieuc;
Mackintosh, Maxine;
McVean, Gil;
Holmes, Chris

Publication type:

Article

Platelet phenotype changes associated with breast cancer and its treatment.

Published in:

Platelets, 2016, v. 27, n. 7, p. 703, doi. 10.3109/09537104.2016.1171302

By:

Holmes, Chris E.;
Levis, Jamie E.;
Schneider, David J.;
Bambace, Nadia M.;
Sharma, Deva;
Lal, Inder;
Wood, Marie E.;
Muss, Hyman B.

Publication type:

Article

Graphing and reporting heterogeneous treatment effects through reference classes.

Published in:

2020

By:

Watson, James A.;
Holmes, Chris C.

Publication type:

journal article

Machine learning analysis plans for randomised controlled trials: detecting treatment effect heterogeneity with strict control of type I error.

Published in:

2020

By:

Watson, James A.;
Holmes, Chris C.

Publication type:

journal article

Bayesian Sparsity-Path-Analysis of Genetic Association Signal using Generalized t Priors.

Published in:

Statistical Applications in Genetics & Molecular Biology, 2012, v. 11, n. 2, p. 1, doi. 10.2202/1544-6115.1712

By:

Lee, Anthony;
Caron, Francois;
Doucet, Arnaud;
Holmes, Chris

Publication type:

Article

The role of WhatsApp™ in pediatric difficult airway management: A study from the PeDI Collaborative.

Published in:

Pediatric Anesthesia, 2023, v. 33, n. 12, p. 1001, doi. 10.1111/pan.14760

By:

Pankiv, Evelina;
Achaibar, Kira;
Hossain, Alomgir;
Fiadjoe, John E.;
Matava, Clyde T.;
von Ungern‐Sternberg, Britta S.;
Sommerfield, David;
Holmes, Chris;
Sabato, Stefano;
Ravula, Niroop;
Jette, Christine;
Mireles, Sam;
Olsen, Julia;
Greenwood, Eric;
Whyte, Simon;
Vega, Eduardo;
Yang, Lei;
Echeverry‐Marin, Piedad;
Pérez‐Pradilla, Carolina;
Jagannathan, Narasimhan

Publication type:

Article

Too noisy to sleep safely?—An observational study of noise levels and distractions during critical phases of pediatric anesthesia.

Published in:

Pediatric Anesthesia, 2020, v. 30, n. 12, p. 1402, doi. 10.1111/pan.14036

By:

Monaghan, Myles;
Abdelaal Ahmed Mahmoud M. Alkhatip, Ahmed;
Holmes, Chris

Publication type:

Article

Saving sevoflurane: Automated gas control can reduce consumption of anesthetic vapor by one‐third in pediatric anesthesia.

Published in:

Pediatric Anesthesia, 2019, v. 29, n. 4, p. 310, doi. 10.1111/pan.13587

By:

Moran, Peter;
Holmes, Chris;
Barr, David

Publication type:

Article

Research Output from the Irish Paediatric Hospitals in the Field of Anaesthesia and Intensive Care Over 10 Years: A Bibliometric Analysis.

Published in:

Turkish Journal of Anaesthesiology & Reanimation, 2020, v. 48, n. 3, p. 223, doi. 10.5152/TJAR.2019.06787

By:

Alkhatip, Ahmed Abdelaal Ahmed Mahmoud M.;
Younis, Mohamed;
Holmes, Chris;
Sallam, Amr

Publication type:

Article

GWAS identifies 14 loci for device-measured physical activity and sleep duration.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07743-4

By:

Doherty, Aiden;
Smith-Byrne, Karl;
Ferreira, Teresa;
Holmes, Michael V.;
Holmes, Chris;
Pulit, Sara L.;
Lindgren, Cecilia M.

Publication type:

Article

On Markov chain Monte Carlo methods for tall data.

Published in:

Journal of Machine Learning Research, 2017, v. 18, n. 47-53, p. 1

By:

Bardenet, Rémi;
Doucet, Arnaud;
Holmes, Chris

Publication type:

Article

Associations between arterial stiffness and platelet activation in normotensive overweight and obese young adults.

Published in:

Clinical & Experimental Hypertension, 2014, v. 36, n. 3, p. 115, doi. 10.3109/10641963.2013.789045

By:

Cooper, Jennifer N.;
Evans, Rhobert W.;
Mori Brooks, Maria;
Fried, Linda;
Holmes, Chris;
Barinas-Mitchell, Emma;
Sutton-Tyrrell, Kim

Publication type:

Article

The evolution of business-to-business FinTech: What the future holds.

Published in:

Journal of Payments Strategy & Systems, 2019, v. 13, n. 3, p. 217, doi. 10.69554/fozo1960

By:

Holmes, Chris;
King, Rachel

Publication type:

Article

A note on statistical repeatability and study design for high-throughput assays.

Published in:

2017

By:

Nicholson, George;
Holmes, Chris

Publication type:

journal article

The impact of age on genetic risk for common diseases.

Published in:

PLoS Genetics, 2021, v. 17, n. 8, p. 1, doi. 10.1371/journal.pgen.1009723

By:

Jiang, Xilin;
Holmes, Chris;
McVean, Gil

Publication type:

Article

Model-based tool support for Tactical Data Links: an experience report from the defence domain.

Published in:

Software & Systems Modeling, 2017, v. 16, n. 2, p. 559, doi. 10.1007/s10270-015-0480-2

By:

Ajit, Suraj;
Holmes, Chris;
Johnson, Julian;
Kolovos, Dimitrios;
Paige, Richard

Publication type:

Article

Platelets in Tumor Progression: A Host Factor That Offers Multiple Potential Targets in the Treatment of Cancer.

Published in:

Journal of Cellular Physiology, 2014, v. 229, n. 8, p. 1005, doi. 10.1002/jcp.24539

By:

Sharma, Deva;
Brummel‐Ziedins, Kathleen E.;
Bouchard, Beth A.;
Holmes, Chris E.

Publication type:

Article

Spatially adaptive smoothing splines.

Published in:

Biometrika, 2006, v. 93, n. 1, p. 113, doi. 10.1093/biomet/93.1.113

By:

Pintore, Alexandre;
Speckman, Paul;
Holmes, Chris C.

Publication type:

Article

On Rereading Kazuo Ishiguro.

Published in:

Modern Fiction Studies, 2021, v. 67, n. 1, p. N.PAG, doi. 10.1353/mfs.2021.0000

By:

Holmes, Chris;
Rich, Kelly Mee

Publication type:

Article

Risk factors for venous thromboembolism in metastatic colorectal cancer with contemporary treatment: A SEER‐Medicare analysis.

Published in:

Cancer Medicine, 2022, v. 11, n. 8, p. 1817, doi. 10.1002/cam4.4581

By:

Ades, Steven;
Pulluri, Bhargavi;
Holmes, Chris E.;
Lal, Inder;
Kumar, Santosh;
Littenberg, Benjamin

Publication type:

Article

Assessments and developments in constructing a National Health Index for policy-making, in the UK.

Published in:

Journal of the Royal Statistical Society: Series A (Statistics in Society), 2025, v. 188, n. 2, p. 491, doi. 10.1093/jrsssa/qnae060

By:

Freni-Sterrantino, Anna;
Prescott, Thomas P;
Ceely, Greg;
Glickman, Myer;
Holmes, Chris

Publication type:

Article

The effect of P2Y-mediated platelet activation on the release of VEGF and endostatin from platelets.

Published in:

Platelets, 2010, v. 21, n. 2, p. 85, doi. 10.3109/09537100903470298

By:

Bambace, Nadia M.;
Levis, Jamie E.;
Holmes, Chris E.

Publication type:

Article