Works by Hobza, Roman

Results: 48

Impact of repetitive DNA on sex chromosome evolution in plants.

Published in:

Chromosome Research, 2015, v. 23, n. 3, p. 561, doi. 10.1007/s10577-015-9496-2

By:

Hobza, Roman;
Kubat, Zdenek;
Cegan, Radim;
Jesionek, Wojciech;
Vyskot, Boris;
Kejnovsky, Eduard

Publication type:

Article

Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes.

Published in:

Chromosome Research, 2008, v. 16, n. 7, p. 961, doi. 10.1007/s10577-008-1254-2

By:

Tomas Cermak;
Zdenek Kubat;
Roman Hobza;
Andrea Koblizkova;
Alex Widmer;
Jiri Macas;
Boris Vyskot;
Eduard Kejnovsky

Publication type:

Article

HiC-TE: a computational pipeline for Hi-C data analysis to study the role of repeat family interactions in the genome 3D organization.

Published in:

Bioinformatics, 2022, v. 38, n. 16, p. 4030, doi. 10.1093/bioinformatics/btac442

By:

Lexa, Matej;
Cechova, Monika;
Nguyen, Son Hoang;
Jedlicka, Pavel;
Tokan, Viktor;
Kubat, Zdenek;
Hobza, Roman;
Kejnovsky, Eduard

Publication type:

Article

Telomeric retrotransposons show propensity to form G-quadruplexes in various eukaryotic species.

Published in:

Mobile DNA, 2023, v. 14, n. 1, p. 1, doi. 10.1186/s13100-023-00291-9

By:

Jedlička, Pavel;
Tokan, Viktor;
Kejnovská, Iva;
Hobza, Roman;
Kejnovský, Eduard

Publication type:

Article

Correction to: Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions: in silico study.

Published in:

2020

By:

Jedlicka, Pavel;
Lexa, Matej;
Vanat, Ivan;
Hobza, Roman;
Kejnovsky, Eduard

Publication type:

Correction Notice

Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions: in silico study.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. 1, doi. 10.1186/s13100-019-0186-z

By:

Jedlicka, Pavel;
Lexa, Matej;
Vanat, Ivan;
Hobza, Roman;
Kejnovsky, Eduard

Publication type:

Article

Epigenetic control of reproductive development.

Published in:

Plant Systematics & Evolution, 2017, v. 303, n. 8, p. 991, doi. 10.1007/s00606-016-1377-4

By:

Lorenzo, José;
Hobza, Roman;
Vyskot, Boris

Publication type:

Article

The Formation of Sex Chromosomes in Silene latifolia and S. dioica Was Accompanied by Multiple Chromosomal Rearrangements.

Published in:

Frontiers in Plant Science, 2020, v. 10, p. 1, doi. 10.3389/fpls.2020.00205

By:

Bačovský, Václav;
Čegan, Radim;
Šimoníková, Denisa;
Hřibová, Eva;
Hobza, Roman

Publication type:

Article

Competition of Parental Genomes in Plant Hybrids.

Published in:

Frontiers in Plant Science, 2020, p. 1, doi. 10.3389/fpls.2020.00200

By:

Glombik, Marek;
Bačovský, Václav;
Hobza, Roman;
Kopecký, David

Publication type:

Article

Sexy ways: approaches to studying plant sex chromosomes.

Published in:

Journal of Experimental Botany, 2024, v. 75, n. 17, p. 5204, doi. 10.1093/jxb/erae173

By:

Hobza, Roman;
Bačovský, Václav;
Čegan, Radim;
Horáková, Lucie;
Hubinský, Marcel;
Janíček, Tomáš;
Janoušek, Bohuslav;
Jedlička, Pavel;
Kružlicová, Jana;
Kubát, Zdeněk;
Lorenzo, José Luis Rodríguez;
Novotná, Pavla;
Hudzieczek, Vojtěch

Publication type:

Article

Non-canonical bases differentially represented in the sex chromosomes of the dioecious plant Silene latifolia.

Published in:

Journal of Experimental Botany, 2024, v. 75, n. 13, p. 3849, doi. 10.1093/jxb/erae178

By:

Hubinský, Marcel;
Hobza, Roman;
Starczak, Marta;
Gackowski, Daniel;
Kubát, Zdeněk;
Janíček, Tomáš;
Horáková, Lucie;
Lorenzo, Jose Luis Rodriguez

Publication type:

Article

Chemical genetics in Silene latifolia elucidate regulatory pathways involved in gynoecium development.

Published in:

Journal of Experimental Botany, 2022, v. 73, n. 8, p. 2354, doi. 10.1093/jxb/erab538

By:

Bačovský, Václav;
Čegan, Radim;
Tihlaříková, Eva;
Neděla, Vilém;
Hudzieczek, Vojtěch;
Smrža, Lubomír;
Janíček, Tomáš;
Beneš, Vladimír;
Hobza, Roman

Publication type:

Article

Impact of Repetitive Elements on the γ Chromosome Formation in Plants.

Published in:

Genes, 2017, v. 8, n. 11, p. 302, doi. 10.3390/genes8110302

By:

Hobza, Roman;
Cegan, Radim;
Jesionek, Wojciech;
Kejnovsky, Eduard;
Vyskot, Boris;
Kubat, Zdenek

Publication type:

Article

Satellite DNA and Transposable Elements in Seabuckthorn (Hippophae rhamnoides), a Dioecious Plant with Small Y and Large X Chromosomes.

Published in:

Genome Biology & Evolution, 2017, v. 9, n. 1, p. 197, doi. 10.1093/gbe/evw303

By:

Puterova, Janka;
Razumova, Olga;
Martinek, Tomas;
Alexandrov, Oleg;
Divashuk, Mikhail;
Kubat, Zdenek;
Hobza, Roman;
Karlov, Gennady;
Kejnovsky, Eduard

Publication type:

Article

Contrasting Patterns of Transposable Element and Satellite Distribution on Sex Chromosomes (XY1Y2) in the Dioecious Plant Rumex acetosa.

Published in:

Genome Biology & Evolution, 2013, v. 5, n. 4, p. 769, doi. 10.1093/gbe/evt049

By:

Steflova, Pavlina;
Tokan, Viktor;
Vogel, Ivan;
Lexa, Matej;
Macas, Jiri;
Novak, Petr;
Hobza, Roman;
Vyskot, Boris;
Kejnovsky, Eduard

Publication type:

Article

The Sister Chromatid Division of the Heteromorphic Sex Chromosomes in Silene Species and Their Transmissibility towards the Mitosis.

Published in:

International Journal of Molecular Sciences, 2022, v. 23, n. 5, p. 2422, doi. 10.3390/ijms23052422

By:

Bačovský, Václav;
Janíček, Tomáš;
Hobza, Roman

Publication type:

Article

The role of chromosomal rearrangements in the evolution of Silene latifolia sex chromosomes.

Published in:

Molecular Genetics & Genomics, 2007, v. 278, n. 6, p. 633, doi. 10.1007/s00438-007-0279-0

By:

Hobza, Roman;
Kejnovsky, Eduard;
Vyskot, Boris;
Widmer, Alex

Publication type:

Article

Chromosomal location and gene paucity of the male specific region on papaya Y chromosome.

Published in:

Molecular Genetics & Genomics, 2007, v. 278, n. 2, p. 177, doi. 10.1007/s00438-007-0243-z

By:

Qingyi Yu;
Shaobin Hou;
Roman Hobza;
F. Feltus;
Xiue Wang;
Weiwei Jin;
Rachel Skelton;
Cornelia Lemke;
Jimmy Saw;
Paul Moore;
Maqsudul Alam;
Jiming Jiang;
Andrew Paterson;
Boris Vyskot

Publication type:

Article

Transcriptome Response to Cadmium Exposure in Barley (Hordeum vulgare L.).

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.629089

By:

Kintlová, Martina;
Vrána, Jan;
Hobza, Roman;
Blavet, Nicolas;
Hudzieczek, Vojtěch

Publication type:

Article

Structure and evolution of Apetala3, a sex-linked gene in Silene latifolia.

Published in:

BMC Plant Biology, 2010, v. 10, p. 180, doi. 10.1186/1471-2229-10-180

By:

Cegan, Radim;
Marais, Gabriel AB;
Kubekova, Hana;
Blavet, Nicolas;
Widmer, Alex;
Vyskot, Boris;
Doležel, Jaroslav;
Šafár, Jan;
Hobza, Roman

Publication type:

Article

Phased Assembly of Neo-Sex Chromosomes Reveals Extensive Y Degeneration and Rapid Genome Evolution in Rumex hastatulus.

Published in:

Molecular Biology & Evolution, 2024, v. 41, n. 4, p. 1, doi. 10.1093/molbev/msae074

By:

Sacchi, Bianca;
Humphries, Zoë;
Kružlicová, Jana;
Bodláková, Markéta;
Pyne, Cassandre;
Choudhury, Baharul I;
Gong, Yunchen;
Bačovský, Václav;
Hobza, Roman;
Barrett, Spencer C H;
Wright, Stephen I

Publication type:

Article

Possible mechanisms responsible for absence of a retrotransposon family on a plant Y chromosome.

Published in:

New Phytologist, 2014, v. 202, n. 2, p. 662, doi. 10.1111/nph.12669

By:

Kubat, Zdenek;
Zluvova, Jitka;
Vogel, Ivan;
Kovacova, Viera;
Cermak, Tomas;
Cegan, Radim;
Hobza, Roman;
Vyskot, Boris;
Kejnovsky, Eduard

Publication type:

Article

Comparative analysis of a plant pseudoautosomal region (PAR) in Silene latifolia with the corresponding S. vulgaris autosome.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 226, doi. 10.1186/1471-2164-13-226

By:

Blavet, Nicolas;
Blavet, Hana;
Čegan, Radim;
Zemp, Niklaus;
Zdanska, Jana;
Janoušek, Bohuslav;
Hobza, Roman;
Widmer, Alex

Publication type:

Article

Fully automated pipeline for detection of sex linked genes using RNA-Seq data.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0509-0

By:

Michalovova, Monika;
Kubat, Zdenek;
Hobza, Roman;
Vyskot, Boris;
Kejnovsky, Eduard

Publication type:

Article

Fully automated pipeline for detection of sex linked genes using RNA-Seq data.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0509-0

By:

Michalovova, Monika;
Kubat, Zdenek;
Hobza, Roman;
Vyskot, Boris;
Kejnovsky, Eduard

Publication type:

Article

The X Chromosome Is Necessary for Somatic Development in the Dioecious Silene latifolia: Cytogenetic and Molecular Evidence and Sequencing of a Haploid Genome.

Published in:

Cytogenetic & Genome Research, 2014, v. 143, n. 1-3, p. 96, doi. 10.1159/000363431

By:

Soukupova, Magda;
Nevrtalova, Eva;
Čížková, Jana;
Vogel, Ivan;
Cegan, Radim;
Hobza, Roman;
Vyskot, Boris

Publication type:

Article

Identification of a Novel Retrotransposon with Sex Chromosome-Specific Distribution in Silene latifolia.

Published in:

Cytogenetic & Genome Research, 2014, v. 143, n. 1-3, p. 87, doi. 10.1159/000362142

By:

Kralova, Tereza;
Cegan, Radim;
Kubat, Zdenek;
Vrana, Jan;
Vyskot, Boris;
Vogel, Ivan;
Kejnovsky, Eduard;
Hobza, Roman

Publication type:

Article

Evolution of sex determination and heterogamety changes in section Otites of the genus Silene.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-018-37412-x

By:

Balounova, Veronika;
Gogela, Roman;
Cegan, Radim;
Cangren, Patrik;
Zluvova, Jitka;
Safar, Jan;
Kovacova, Viera;
Bergero, Roberta;
Hobza, Roman;
Vyskot, Boris;
Oxelman, Bengt;
Charlesworth, Deborah;
Janousek, Bohuslav

Publication type:

Article

Quadruplex-Forming Motif Inserted into 3′UTR of Ty1his3-AI Retrotransposon Inhibits Retrotransposition in Yeast.

Published in:

Biology (2079-7737), 2021, v. 10, n. 4, p. 347, doi. 10.3390/biology10040347

By:

Tokan, Viktor;
Lorenzo, Jose Luis Rodriguez;
Jedlicka, Pavel;
Kejnovska, Iva;
Hobza, Roman;
Kejnovsky, Eduard

Publication type:

Article

Expression response of duplicated metallothionein 3 gene to copper stress in Silene vulgaris ecotypes.

Published in:

Protoplasma, 2014, v. 251, n. 6, p. 1427, doi. 10.1007/s00709-014-0644-x

By:

Nevrtalova, Eva;
Baloun, Jiri;
Hudzieczek, Vojtech;
Cegan, Radim;
Vyskot, Boris;
Dolezel, Jaroslav;
Safar, Jan;
Milde, David;
Hobza, Roman

Publication type:

Article

DNA methylation and genetic degeneration of the Y chromosome in the dioecious plant Silene latifolia.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-4936-y

By:

Rodríguez Lorenzo, José Luis;
Hobza, Roman;
Vyskot, Boris

Publication type:

Article

The slowdown of Y chromosome expansion in dioecious <italic>Silene latifolia</italic> due to DNA loss and male-specific silencing of retrotransposons.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-4547-7

By:

Puterova, Janka;
Kubat, Zdenek;
Kejnovsky, Eduard;
Jesionek, Wojciech;
Cizkova, Jana;
Vyskot, Boris;
Hobza, Roman

Publication type:

Article

Plant centromeric retrotransposons: a structural and cytogenetic perspective.

Published in:

Mobile DNA, 2011, v. 2, n. 1, p. 1, doi. 10.1186/1759-8753-2-4

By:

Neumann, Pavel;
Navrátilová, Alice;
Koblížková, Andrea;
KejnovskÝ, Eduard;
Hribová, Eva;
Hobza, Roman;
Widmer, Alex;
Doležel, Jaroslav;
Macas, Jiří

Publication type:

Article

MK17, a specific marker closely linked to the gynoecium suppression region on the Y chromosome in Silene latifolia.

Published in:

Theoretical & Applied Genetics, 2006, v. 113, n. 2, p. 280, doi. 10.1007/s00122-006-0293-3

By:

Hobza, Roman;
Hrusakova, Pavla;
Safar, Jan;
Bartos, Jan;
Janousek, Bohuslav;
Zluvova, Jitka;
Michu, Elleni;
Dolezel, Jaroslav;
Vyskot, Boris

Publication type:

Article

Comparison of various approaches to detect algal culture contamination: a case study of Chlorella sp. contamination in a Phaeodactylum tricornutum culture.

Published in:

Applied Microbiology & Biotechnology, 2021, v. 105, n. 12, p. 5189, doi. 10.1007/s00253-021-11396-7

By:

Grivalský, Tomáš;
Střížek, Antonín;
Přibyl, Pavel;
Lukavský, Jaromír;
Čegan, Radim;
Hobza, Roman;
Hrouzek, Pavel

Publication type:

Article

Genetic and Functional Analysis of DD44, a Sex-Linked Gene From the Dioecious Plant Silene latifolia, Provides Clues to Early Events in Sex Chromosome Evolution.

Published in:

Genetics, 2003, v. 163, n. 1, p. 321, doi. 10.1093/genetics/163.1.321

By:

Moore, Richard C.;
Kozyreva, Olga;
Lebel-Hardenack, Sabine;
Siroky, Jiri;
Hobza, Roman;
Vyskot, Boris;
Grant, Sarah R.

Publication type:

Article

Sperm‐dependent asexual species and their role in ecology and evolution.

Published in:

Ecology & Evolution (20457758), 2023, v. 13, n. 10, p. 1, doi. 10.1002/ece3.10522

By:

Janko, Karel;
Mikulíček, Peter;
Hobza, Roman;
Schlupp, Ingo

Publication type:

Article

Seed shape and size of Silene latifolia, differences between sexes, and influence of the parental genome in hybrids with Silene dioica.

Published in:

Frontiers in Plant Science, 2024, p. 1, doi. 10.3389/fpls.2024.1297676

By:

Marcel, Hubinský;
José Javier, Martín-Gómez;
Emilio, Cervantes;
Roman, Hobza;
Jose Luis, Rodríguez Lorenzo

Publication type:

Article

Fundamentally different repetitive element composition of sex chromosomes in Rumex acetosa.

Published in:

Annals of Botany, 2021, v. 127, n. 1, p. 33, doi. 10.1093/aob/mcaa160

By:

Jesionek, Wojciech;
Bodláková, Markéta;
Kubát, Zdeněk;
Čegan, Radim;
Vyskot, Boris;
Vrána, Jan;
Šafář, Jan;
Puterova, Janka;
Hobza, Roman

Publication type:

Article

Sex and the flower – developmental aspects of sex chromosome evolution.

Published in:

Annals of Botany, 2018, v. 122, n. 7, p. 1085, doi. 10.1093/aob/mcy130

By:

Hobza, Roman;
Hudzieczek, Vojtech;
Kubat, Zdenek;
Cegan, Radim;
Vyskot, Boris;
Kejnovsky, Eduard;
Janousek, Bohuslav

Publication type:

Article

Expansion of Microsatellites on Evolutionary Young Y Chromosome.

Published in:

PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0045519

By:

Kejnovský, Eduard;
Michalovova, Monika;
Steflova, Pavlina;
Kejnovska, Iva;
Manzano, Susana;
Hobza, Roman;
Kubat, Zdenek;
Kovarik, Jan;
Jamilena, Manuel;
Vyskot, Boris

Publication type:

Article

Genomic Diversity in Two Related Plant Species with and without Sex Chromosomes - Silene latifolia and S. vulgaris.

Published in:

PLoS ONE, 2012, v. 7, n. 2, p. 1, doi. 10.1371/journal.pone.0031898

By:

Cegan, Radim;
Vyskot, Boris;
Kejnovsky, Eduard;
Kubat, Zdenek;
Blavet, Hana;
Šafář, Jan;
Dolezžel, Jaroslav;
Blavet, Nicolas;
Hobza, Roman

Publication type:

Article

If Mendel Was Using CRISPR: Genome Editing Meets Non‐Mendelian Inheritance.

Published in:

Advanced Functional Materials, 2022, v. 32, n. 37, p. 1, doi. 10.1002/adfm.202202585

By:

Hudzieczek, Vojtěch;
Hobza, Roman;
Cápal, Petr;
Šafář, Jan;
Doležel, Jaroslav

Publication type:

Article

The distribution of epigenetic histone marks differs between the X and Y chromosomes in Silene latifolia.

Published in:

Planta: An International Journal of Plant Biology, 2019, v. 250, n. 2, p. 487, doi. 10.1007/s00425-019-03182-7

By:

Bačovský, Václav;
Houben, Andreas;
Kumke, Katrin;
Hobza, Roman

Publication type:

Article

Early Sex-Chromosome Evolution in the Diploid Dioecious Plant Mercurialis annua.

Published in:

Genetics, 2019, v. 212, n. 3, p. 815, doi. 10.1534/genetics.119.302045

By:

Veltsos, Paris;
Ridout, Kate E.;
Toups, Melissa A.;
González-Martínez, Santiago C.;
Muyle, Aline;
Emery, Olivier;
Rastas, Pasi;
Hudzieczek, Vojtech;
Hobza, Roman;
Vyskot, Boris;
Marais, Gabriel A. B.;
Filatov, Dmitry A.;
Pannell, John R.

Publication type:

Article

Independent Origin of Sex Chromosomes in Two Species of the Genus Silene.

Published in:

Genetics, 2008, v. 179, n. 2, p. 1129, doi. 10.1534/genetics.107.085670

By:

Mrackova, Martina;
Nicolas, Michael;
Hobza, Roman;
Negrutiu, Ioan;
Monéger, Françoise;
Widmer, Alexander;
Vyskot, Boris;
Janousek, Bohuslav

Publication type:

Article

The inter-specific hybrid Silene latifolia× S. viscosa reveals early events of sex chromosome evolution.

Published in:

Evolution & Development, 2005, v. 7, n. 4, p. 327, doi. 10.1111/j.1525-142X.2005.05038.x

By:

Zluvova, Jitka;
Lengerova, Martina;
Markova, Michaela;
Hobza, Roman;
Nicolas, Michael;
Vyskot, Boris;
Charlesworth, Deborah;
Negrutiu, Ioan;
Janousek, Bohuslav

Publication type:

Article

Microsatellite accumulation on the Y chromosome in Silene latifolia.

Published in:

Genome, 2008, v. 51, n. 5, p. 350, doi. 10.1139/G08-024

By:

Kubat, Zdenek;
Hobza, Roman;
Vyskot, Boris;
Kejnovsky, Eduard

Publication type:

Article