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COREX/BEST server: a web browser-based program that calculates regional stability variations within protein structures.
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- Bioinformatics, 2005, v. 21, n. 15, p. 3318, doi. 10.1093/bioinformatics/bti520
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- Article
The variable domain from dynamin‐related protein 1 promotes liquid–liquid phase separation that enhances its interaction with cardiolipin‐containing membranes.
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- Protein Science: A Publication of the Protein Society, 2023, v. 32, n. 11, p. 1, doi. 10.1002/pro.4787
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- Article
Cover Image.
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- Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 4, p. 1, doi. 10.1002/pro.4293
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Phylogenetic convergence of phase separation and mitotic function in the disordered protein BuGZ.
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- Protein Science: A Publication of the Protein Society, 2022, v. 31, n. 4, p. 822, doi. 10.1002/pro.4270
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- Article
Exploring allosteric coupling in the α-subunit of Heterotrimeric G proteins using evolutionary and ensemble-based approaches.
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- BMC Structural Biology, 2008, v. 8, p. 1, doi. 10.1186/1472-6807-8-23
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- Article
Thermodynamic Atlas of Proteomes Reveals Energetic Innovation across the Tree of Life.
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- Molecular Biology & Evolution, 2022, v. 39, n. 3, p. 1, doi. 10.1093/molbev/msac010
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- Article
Sequence-Based Analysis of Protein Energy Landscapes Reveals Nonuniform Thermal Adaptation within the Proteome.
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- Molecular Biology & Evolution, 2009, v. 26, n. 10, p. 2217
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- Article
Design of protein switches based on an ensemble model of allostery.
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- Nature Communications, 2015, v. 6, n. 4, p. 6968, doi. 10.1038/ncomms7968
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- Article
Interplay between allostery and intrinsic disorder in an ensemble.
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- Biochemical Society Transactions, 2012, v. 40, n. 5, p. 975, doi. 10.1042/BST20120163
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- Article
Structural biology: Finding the wet spots.
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- Nature, 2011, v. 469, n. 7329, p. 166, doi. 10.1038/469166a
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- Article
Evolutionary conservation of the polyproline II conformation surrounding intrinsically disordered phosphorylation sites.
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- Protein Science: A Publication of the Protein Society, 2013, v. 22, n. 4, p. 405, doi. 10.1002/pro.2217
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- Article
Exploring the impact of polyproline II (P<sub>II</sub>) conformational bias on the binding of peptides to the SEM-5 SH3 domain.
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- Protein Science: A Publication of the Protein Society, 2008, v. 17, n. 7, p. 1200, doi. 10.1110/ps.033647.107
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- Article
Analysis of the 'thermodynamic information content' of a Homo sapiens structural database reveals hierarchical thermodynamic organization.
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- Protein Science: A Publication of the Protein Society, 2004, v. 13, n. 7, p. 1787, doi. 10.1110/ps.04706204
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- Article
Directed discovery of bivalent peptide ligands to an SH3 domain.
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- Protein Science: A Publication of the Protein Society, 2004, v. 13, n. 3, p. 626, doi. 10.1110/ps.03470504
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- Article
Ligand-induced changes in dynamics in the RT loop of the C-terminal SH3 domain of Sem-5 indicate cooperative conformational coupling.
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- Protein Science: A Publication of the Protein Society, 2003, v. 12, n. 5, p. 982, doi. 10.1110/ps.0238003
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- Article
The effect of the polyproline II (PPII) conformation on the denatured state entropy.
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- Protein Science: A Publication of the Protein Society, 2003, v. 12, n. 3, p. 447, doi. 10.1110/ps.0237803
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- Article
Thermodynamic environments in proteins: Fundamental determinants of fold specificity.
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- Protein Science: A Publication of the Protein Society, 2002, v. 11, n. 8, p. 1945, doi. 10.1110/ps.0203202
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- Article
Thermodynamic propensities of amino acids in the native state ensemble: Implications for fold recognition.
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- Protein Science: A Publication of the Protein Society, 2001, v. 10, n. 5, p. 1032, doi. 10.1110/ps.01601
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- Article
Direct access to the cooperative substructure of proteins and the protein ensemble via cold denaturation.
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- Nature Structural & Molecular Biology, 2004, v. 11, n. 4, p. 352, doi. 10.1038/nsmb739
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- Article
Genetically tunable frustration controls allostery in an intrinsically disordered transcription factor.
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- eLife, 2017, p. 1, doi. 10.7554/eLife.30688
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- Article
A Horizontal Alignment Tool for Numerical Trend Discovery in Sequence Data: Application to Protein Hydropathy.
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- PLoS Computational Biology, 2013, v. 9, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003247
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- Article
Investigating Homology between Proteins using Energetic Profiles.
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- PLoS Computational Biology, 2010, v. 6, n. 3, p. 1, doi. 10.1371/journal.pcbi.1000722
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The ensemble nature of allostery.
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- Nature, 2014, v. 508, n. 7496, p. 331, doi. 10.1038/nature13001
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Structural biology: Signalling from disordered proteins.
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- Nature, 2013, v. 498, n. 7454, p. 308, doi. 10.1038/498308a
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- Article
The role of negative selection in protein evolution revealed through the energetics of the native sate ensemble.
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- Proteins, 2018, v. 86, n. 12, p. 1313, doi. 10.1002/prot.25484
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- Article
The role of negative selection in protein evolution revealed through the energetics of the native state ensemble.
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- Proteins, 2016, v. 84, n. 4, p. 435, doi. 10.1002/prot.24989
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- Article
Molecular mechanisms of pH-driven conformational transitions of proteins: Insights from continuum electrostatics calculations of acid unfolding.
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- Proteins, 2006, v. 63, n. 1, p. 113, doi. 10.1002/prot.20797
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- Article
Ensemble-based signatures of energy propagation in proteins: A new view of an old phenomenon.
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- Proteins, 2006, v. 62, n. 3, p. 728, doi. 10.1002/prot.20749
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- Article
Ribosome A and P sites revealed by length analysis of ribosome profiling data.
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- Nucleic Acids Research, 2015, v. 43, n. 7, p. 3680, doi. 10.1093/nar/gkv200
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Predicting the equilibrium protein folding pathway: Structure-based analysis of staphylococcal nuclease.
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- Proteins, 1997, v. 27, n. 2, p. 171, doi. 10.1002/(SICI)1097-0134(199702)27:2<171::AID-PROT3>3.0.CO;2-J
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The enthalpy change in protein folding and binding: Refinement of parameters for structure-based calculations.
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- Proteins, 1996, v. 26, n. 2, p. 123, doi. 10.1002/(SICI)1097-0134(199610)26:2<123::AID-PROT2>3.0.CO;2-H
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- Article
The magnitude of the backbone conformational entropy change in protein folding.
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- Proteins, 1996, v. 25, n. 2, p. 143, doi. 10.1002/(SICI)1097-0134(199606)25:2<143::AID-PROT1>3.0.CO;2-J
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- Article
The heat capacity of proteins.
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- Proteins, 1995, v. 22, n. 4, p. 404, doi. 10.1002/prot.340220410
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- Article